RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 SOD2P04179 222 aa17.48■□□□□ 0.39
VIM-206ENST00000487938 SDC1P18827 310 aa17.48■□□□□ 0.39
VIM-206ENST00000487938 PTPN6P29350 595 aa17.48■□□□□ 0.39
VIM-206ENST00000487938 PPP3CCP48454 512 aa17.48■□□□□ 0.39
VIM-206ENST00000487938 EPHB3P54753 998 aa17.48■□□□□ 0.39
VIM-206ENST00000487938 IL1RL1Q01638 556 aa17.48■□□□□ 0.39
VIM-206ENST00000487938 EPS8Q12929 822 aa17.48■□□□□ 0.39
VIM-206ENST00000487938 PTCHD3Q3KNS1 767 aa17.48■□□□□ 0.39
VIM-206ENST00000487938 LRIF1Q5T3J3 769 aa17.48■□□□□ 0.39
VIM-206ENST00000487938 OR4F3Q6IEY1 312 aa17.48■□□□□ 0.39
VIM-206ENST00000487938 NEK5Q6P3R8 708 aa17.48■□□□□ 0.39
VIM-206ENST00000487938 GALNT10Q86SR1 603 aa17.48■□□□□ 0.39
VIM-206ENST00000487938 EGFL6Q8IUX8 553 aa17.48■□□□□ 0.39
VIM-206ENST00000487938 REM2Q8IYK8 340 aaPredicted RBP17.48■□□□□ 0.39
VIM-206ENST00000487938 BEND7Q8N7W2 519 aaPredicted RBP17.48■□□□□ 0.39
VIM-206ENST00000487938 ARL10Q8N8L6 244 aa17.48■□□□□ 0.39
VIM-206ENST00000487938 OR52E4Q8NGH9 312 aa17.48■□□□□ 0.39
VIM-206ENST00000487938 CNIH3Q8TBE1 160 aa17.48■□□□□ 0.39
VIM-206ENST00000487938 BORCS5Q969J3 196 aa17.48■□□□□ 0.39
VIM-206ENST00000487938 FBXL8Q96CD0 374 aa17.48■□□□□ 0.39
VIM-206ENST00000487938 APOLD1Q96LR9 279 aa17.48■□□□□ 0.39
VIM-206ENST00000487938 PAK1IP1Q9NWT1 392 aaPredicted RBP17.48■□□□□ 0.39
VIM-206ENST00000487938 TMEFF2Q9UIK5 374 aaPredicted RBP17.48■□□□□ 0.39
VIM-206ENST00000487938 SLC22A14Q9Y267 594 aa17.48■□□□□ 0.39
VIM-206ENST00000487938 NUP214P35658 2090 aaPredicted RBP17.48■□□□□ 0.39
VIM-206ENST00000487938 XYLBO75191 536 aa17.47■□□□□ 0.39
VIM-206ENST00000487938 ITPKAP23677 461 aa17.47■□□□□ 0.39
VIM-206ENST00000487938 TUBA3CQ13748 450 aa17.47■□□□□ 0.39
VIM-206ENST00000487938 SMYD1Q8NB12 490 aa17.47■□□□□ 0.39
VIM-206ENST00000487938 OR2AP1Q8NGE2 309 aa17.47■□□□□ 0.39
VIM-206ENST00000487938 VOPP1Q96AW1 172 aa17.47■□□□□ 0.39
VIM-206ENST00000487938 PLEKHA8Q96JA3 519 aa17.47■□□□□ 0.39
VIM-206ENST00000487938 EBPLQ9BY08 206 aa17.47■□□□□ 0.39
VIM-206ENST00000487938 RMND5AQ9H871 391 aa17.47■□□□□ 0.39
VIM-206ENST00000487938 ABCB8Q9NUT2 735 aa17.47■□□□□ 0.39
VIM-206ENST00000487938 CFAP97Q9P2B7 532 aa17.47■□□□□ 0.39
VIM-206ENST00000487938 HECAQ9UBI9 543 aaPredicted RBP17.47■□□□□ 0.39
VIM-206ENST00000487938 C3orf18Q9UK00 162 aa17.47■□□□□ 0.39
VIM-206ENST00000487938 PSME2Q9UL46 239 aa17.47■□□□□ 0.39
VIM-206ENST00000487938 SNX6Q9UNH7 406 aa17.47■□□□□ 0.39
VIM-206ENST00000487938 AGAP14A8MT82 685 aa17.47■□□□□ 0.39
VIM-206ENST00000487938 RFXANKO14593 260 aa17.47■□□□□ 0.39
VIM-206ENST00000487938 XPNPEP2O43895 674 aa17.47■□□□□ 0.39
VIM-206ENST00000487938 MAN1A2O60476 641 aa17.47■□□□□ 0.39
VIM-206ENST00000487938 PRAMEF4O60810 478 aa17.47■□□□□ 0.39
VIM-206ENST00000487938 ZBTB11O95625 1053 aaPredicted RBP17.47■□□□□ 0.39
VIM-206ENST00000487938 CBSLP0DN79 551 aa17.47■□□□□ 0.39
VIM-206ENST00000487938 LHCGRP22888 699 aa17.47■□□□□ 0.39
VIM-206ENST00000487938 CBSP35520 551 aa17.47■□□□□ 0.39
VIM-206ENST00000487938 CSNK1DP48730 415 aa17.47■□□□□ 0.39
VIM-206ENST00000487938 BOP1Q14137 746 aaKnown RBP17.47■□□□□ 0.39
VIM-206ENST00000487938 MOGQ16653 247 aa17.47■□□□□ 0.39
VIM-206ENST00000487938 CARD16Q5EG05 197 aa17.47■□□□□ 0.39
VIM-206ENST00000487938 PRAMEF9Q5VWM5 478 aa17.47■□□□□ 0.39
VIM-206ENST00000487938 METTL2BQ6P1Q9 378 aaKnown RBP17.47■□□□□ 0.39
VIM-206ENST00000487938 TPRG1Q6ZUI0 275 aa17.47■□□□□ 0.39
VIM-206ENST00000487938 ZDHHC21Q8IVQ6 265 aa17.47■□□□□ 0.39
VIM-206ENST00000487938 CHPFQ8IZ52 775 aa17.47■□□□□ 0.39
VIM-206ENST00000487938 RAB2BQ8WUD1 216 aa17.47■□□□□ 0.39
VIM-206ENST00000487938 FUNDC2Q9BWH2 189 aa17.47■□□□□ 0.39
VIM-206ENST00000487938 CFHR5Q9BXR6 569 aa17.47■□□□□ 0.39
VIM-206ENST00000487938 ATG10Q9H0Y0 220 aa17.47■□□□□ 0.39
VIM-206ENST00000487938 MAGIXQ9H6Y5 334 aa17.47■□□□□ 0.39
VIM-206ENST00000487938 IL21Q9HBE4 155 aa17.47■□□□□ 0.39
VIM-206ENST00000487938 CREBZFQ9NS37 354 aa17.47■□□□□ 0.39
VIM-206ENST00000487938 MAN2B2Q9Y2E5 1009 aa17.47■□□□□ 0.39
VIM-206ENST00000487938 KCNE1BA0A087WTH5 132 aa17.46■□□□□ 0.39
VIM-206ENST00000487938 SLC1A7O00341 560 aa17.46■□□□□ 0.39
VIM-206ENST00000487938 MTX2O75431 263 aa17.46■□□□□ 0.39
VIM-206ENST00000487938 INMTO95050 263 aa17.46■□□□□ 0.39
VIM-206ENST00000487938 DIRAS1O95057 198 aa17.46■□□□□ 0.39
VIM-206ENST00000487938 FTH1P02794 183 aa17.46■□□□□ 0.39
VIM-206ENST00000487938 CKMP06732 381 aa17.46■□□□□ 0.39
VIM-206ENST00000487938 HNRNPCP07910 306 aaKnown RBP eCLIP17.46■□□□□ 0.39
VIM-206ENST00000487938 PRPS2P11908 318 aa17.46■□□□□ 0.39
VIM-206ENST00000487938 CYP4B1P13584 511 aa17.46■□□□□ 0.39
VIM-206ENST00000487938 FSHRP23945 695 aa17.46■□□□□ 0.39
VIM-206ENST00000487938 MLLT10P55197 1068 aa17.46■□□□□ 0.39
VIM-206ENST00000487938 GTF2H3Q13889 308 aa17.46■□□□□ 0.39
VIM-206ENST00000487938 PLEKHG6Q3KR16 790 aa17.46■□□□□ 0.39
VIM-206ENST00000487938 ZNF691Q5VV52 312 aa17.46■□□□□ 0.39
VIM-206ENST00000487938 C16orf87Q6PH81 154 aa17.46■□□□□ 0.39
VIM-206ENST00000487938 SLC15A4Q8N697 577 aa17.46■□□□□ 0.39
VIM-206ENST00000487938 SCRN2Q96FV2 425 aa17.46■□□□□ 0.39
VIM-206ENST00000487938 P2RY13Q9BPV8 354 aa17.46■□□□□ 0.39
VIM-206ENST00000487938 FAIMQ9NVQ4 179 aa17.46■□□□□ 0.39
VIM-206ENST00000487938 KIAA1522Q9P206 1035 aaPredicted RBP17.46■□□□□ 0.39
VIM-206ENST00000487938 BAG5Q9UL15 447 aa17.46■□□□□ 0.39
VIM-206ENST00000487938 AP3M1Q9Y2T2 418 aa17.46■□□□□ 0.39
VIM-206ENST00000487938 CORINQ9Y5Q5 1042 aa17.46■□□□□ 0.39
VIM-206ENST00000487938 INSL5Q9Y5Q6 135 aa17.46■□□□□ 0.39
VIM-206ENST00000487938 DGKBQ9Y6T7 804 aa17.46■□□□□ 0.39
VIM-206ENST00000487938 AXIN1O15169 862 aa17.46■□□□□ 0.39
VIM-206ENST00000487938 RECQL5O94762 991 aaPredicted RBP17.46■□□□□ 0.39
VIM-206ENST00000487938 HIST1H2AGP0C0S8 130 aaPredicted RBP17.46■□□□□ 0.39
VIM-206ENST00000487938 SRCP12931 536 aa17.46■□□□□ 0.39
VIM-206ENST00000487938 GJA1P17302 382 aa17.46■□□□□ 0.39
VIM-206ENST00000487938 HOXB9P17482 250 aaPredicted RBP17.46■□□□□ 0.39
VIM-206ENST00000487938 HIST1H2ADP20671 130 aa17.46■□□□□ 0.39
VIM-206ENST00000487938 AOAHP28039 575 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms