RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 TXLNGQ9NUQ3 528 aa7.79□□□□□ -1.16
USP40-216ENST00000485943 TMEM9Q9P0T7 183 aa7.79□□□□□ -1.16
USP40-216ENST00000485943 SPATA7Q9P0W8 599 aa7.79□□□□□ -1.16
USP40-216ENST00000485943 CIDEBQ9UHD4 219 aa7.79□□□□□ -1.16
USP40-216ENST00000485943 GPN3Q9UHW5 284 aaPredicted RBP7.79□□□□□ -1.16
USP40-216ENST00000485943 TLK1Q9UKI8 766 aa7.79□□□□□ -1.16
USP40-216ENST00000485943 VWA7Q9Y334 891 aa7.79□□□□□ -1.16
USP40-216ENST00000485943 DYRK1BQ9Y463 629 aa7.79□□□□□ -1.16
USP40-216ENST00000485943 TEX264Q9Y6I9 313 aa7.79□□□□□ -1.16
USP40-216ENST00000485943 ANKRD12Q6UB98 2062 aa7.79□□□□□ -1.16
USP40-216ENST00000485943 MN1Q10571 1320 aaPredicted RBP7.78□□□□□ -1.16
USP40-216ENST00000485943 DNAH14Q0VDD8 3507 aa7.78□□□□□ -1.16
USP40-216ENST00000485943 A0A0J9YY10 115 aa7.78□□□□□ -1.16
USP40-216ENST00000485943 A6NHS1 94 aa7.78□□□□□ -1.16
USP40-216ENST00000485943 B4E171 279 aa7.78□□□□□ -1.16
USP40-216ENST00000485943 TMEM150CB9EJG8 249 aa7.78□□□□□ -1.16
USP40-216ENST00000485943 BTN3A1O00481 513 aa7.78□□□□□ -1.16
USP40-216ENST00000485943 RASGRF2O14827 1237 aa7.78□□□□□ -1.16
USP40-216ENST00000485943 NVLO15381 856 aaKnown RBP7.78□□□□□ -1.16
USP40-216ENST00000485943 PRAMEF10O60809 474 aa7.78□□□□□ -1.16
USP40-216ENST00000485943 SLCO2B1O94956 709 aa7.78□□□□□ -1.16
USP40-216ENST00000485943 THBS1P07996 1170 aa7.78□□□□□ -1.16
USP40-216ENST00000485943 HBQ1P09105 142 aa7.78□□□□□ -1.16
USP40-216ENST00000485943 ANKRD34CP0C6C1 535 aa7.78□□□□□ -1.16
USP40-216ENST00000485943 MPC1LP0DKB6 136 aa7.78□□□□□ -1.16
USP40-216ENST00000485943 CCL4P13236 92 aa7.78□□□□□ -1.16
USP40-216ENST00000485943 STMN1P16949 149 aa7.78□□□□□ -1.16
USP40-216ENST00000485943 AGXTP21549 392 aa7.78□□□□□ -1.16
USP40-216ENST00000485943 VAMP1P23763 118 aa7.78□□□□□ -1.16
USP40-216ENST00000485943 PRDX3P30048 256 aaKnown RBP7.78□□□□□ -1.16
USP40-216ENST00000485943 SSTR1P30872 391 aa7.78□□□□□ -1.16
USP40-216ENST00000485943 GP5P40197 560 aa7.78□□□□□ -1.16
USP40-216ENST00000485943 ARL1P40616 181 aaPredicted RBP7.78□□□□□ -1.16
USP40-216ENST00000485943 TSPAN7P41732 249 aa7.78□□□□□ -1.16
USP40-216ENST00000485943 TMPRSS3P57727 454 aa7.78□□□□□ -1.16
USP40-216ENST00000485943 TUBB4BP68371 445 aa7.78□□□□□ -1.16
USP40-216ENST00000485943 CXADRP78310 365 aa7.78□□□□□ -1.16
USP40-216ENST00000485943 SQSTM1Q13501 440 aa7.78□□□□□ -1.16
USP40-216ENST00000485943 NAB1Q13506 487 aa7.78□□□□□ -1.16
USP40-216ENST00000485943 IL11RAQ14626 422 aa7.78□□□□□ -1.16
USP40-216ENST00000485943 ZC3H12BQ5HYM0 836 aaKnown RBP7.78□□□□□ -1.16
USP40-216ENST00000485943 CTSL3PQ5NE16 218 aa7.78□□□□□ -1.16
USP40-216ENST00000485943 TEDDM1Q5T9Z0 273 aa7.78□□□□□ -1.16
USP40-216ENST00000485943 HECTD2Q5U5R9 776 aa7.78□□□□□ -1.16
USP40-216ENST00000485943 SPESP1Q6UW49 350 aa7.78□□□□□ -1.16
USP40-216ENST00000485943 CCDC81Q6ZN84 652 aa7.78□□□□□ -1.16
USP40-216ENST00000485943 NEK10Q6ZWH5 1172 aa7.78□□□□□ -1.16
USP40-216ENST00000485943 PRSS42Q7Z5A4 293 aa7.78□□□□□ -1.16
USP40-216ENST00000485943 CACNA2D3Q8IZS8 1091 aa7.78□□□□□ -1.16
USP40-216ENST00000485943 ESX1Q8N693 406 aa7.78□□□□□ -1.16
USP40-216ENST00000485943 TTC29Q8NA56 475 aaPredicted RBP7.78□□□□□ -1.16
USP40-216ENST00000485943 OR9A1PQ8NGU1 263 aa7.78□□□□□ -1.16
USP40-216ENST00000485943 LKAAEAR1Q8TD35 194 aa7.78□□□□□ -1.16
USP40-216ENST00000485943 ATL1Q8WXF7 558 aa7.78□□□□□ -1.16
USP40-216ENST00000485943 RERGQ96A58 199 aaPredicted RBP7.78□□□□□ -1.16
USP40-216ENST00000485943 DDA1Q9BW61 102 aa7.78□□□□□ -1.16
USP40-216ENST00000485943 NLNQ9BYT8 704 aa7.78□□□□□ -1.16
USP40-216ENST00000485943 RAB33BQ9H082 229 aa7.78□□□□□ -1.16
USP40-216ENST00000485943 KLHL25Q9H0H3 589 aa7.78□□□□□ -1.16
USP40-216ENST00000485943 ZNF768Q9H5H4 540 aaKnown RBP7.78□□□□□ -1.16
USP40-216ENST00000485943 RUBCNLQ9H714 662 aa7.78□□□□□ -1.16
USP40-216ENST00000485943 MRPS30Q9NP92 439 aaKnown RBP7.78□□□□□ -1.16
USP40-216ENST00000485943 FGF21Q9NSA1 209 aa7.78□□□□□ -1.16
USP40-216ENST00000485943 OCIAD1Q9NX40 245 aa7.78□□□□□ -1.16
USP40-216ENST00000485943 ARL15Q9NXU5 204 aa7.78□□□□□ -1.16
USP40-216ENST00000485943 NDOR1Q9UHB4 597 aa7.78□□□□□ -1.16
USP40-216ENST00000485943 POMT2Q9UKY4 750 aa7.78□□□□□ -1.16
USP40-216ENST00000485943 DHRS7Q9Y394 339 aa7.78□□□□□ -1.16
USP40-216ENST00000485943 PCDHGA7Q9Y5G6 932 aa7.78□□□□□ -1.16
USP40-216ENST00000485943 PCM1Q15154 2024 aa7.78□□□□□ -1.16
USP40-216ENST00000485943 DCHS1Q96JQ0 3298 aa7.77□□□□□ -1.17
USP40-216ENST00000485943 SLC9B1P1A6NJY1 282 aa7.77□□□□□ -1.17
USP40-216ENST00000485943 C9J4A7 227 aa7.77□□□□□ -1.17
USP40-216ENST00000485943 E7EQ34 232 aa7.77□□□□□ -1.17
USP40-216ENST00000485943 EIF3FO00303 357 aaPredicted RBP7.77□□□□□ -1.17
USP40-216ENST00000485943 SGTAO43765 313 aa7.77□□□□□ -1.17
USP40-216ENST00000485943 KIF1CO43896 1103 aaKnown RBP7.77□□□□□ -1.17
USP40-216ENST00000485943 KATNA1O75449 491 aa7.77□□□□□ -1.17
USP40-216ENST00000485943 GPC4O75487 556 aa7.77□□□□□ -1.17
USP40-216ENST00000485943 SCRG1O75711 98 aa7.77□□□□□ -1.17
USP40-216ENST00000485943 STK17BO94768 372 aa7.77□□□□□ -1.17
USP40-216ENST00000485943 FKBP9O95302 570 aa7.77□□□□□ -1.17
USP40-216ENST00000485943 C1orf105O95561 183 aa7.77□□□□□ -1.17
USP40-216ENST00000485943 ACSL3O95573 720 aa7.77□□□□□ -1.17
USP40-216ENST00000485943 C9P02748 559 aa7.77□□□□□ -1.17
USP40-216ENST00000485943 EIF2S1P05198 315 aaKnown RBP7.77□□□□□ -1.17
USP40-216ENST00000485943 UQCRHP07919 91 aa7.77□□□□□ -1.17
USP40-216ENST00000485943 F7P08709 466 aaPredicted RBP7.77□□□□□ -1.17
USP40-216ENST00000485943 EBLN1P0CF75 366 aa7.77□□□□□ -1.17
USP40-216ENST00000485943 FGF3P11487 239 aaPredicted RBP7.77□□□□□ -1.17
USP40-216ENST00000485943 UGT2B7P16662 529 aa7.77□□□□□ -1.17
USP40-216ENST00000485943 NELFEP18615 380 aaKnown RBP7.77□□□□□ -1.17
USP40-216ENST00000485943 CD9P21926 228 aa7.77□□□□□ -1.17
USP40-216ENST00000485943 IVDP26440 423 aa7.77□□□□□ -1.17
USP40-216ENST00000485943 ARNTP27540 789 aa7.77□□□□□ -1.17
USP40-216ENST00000485943 OAS2P29728 719 aaKnown RBP7.77□□□□□ -1.17
USP40-216ENST00000485943 MSH2P43246 934 aa7.77□□□□□ -1.17
USP40-216ENST00000485943 RPS15P62841 145 aaKnown RBP7.77□□□□□ -1.17
USP40-216ENST00000485943 MC2RQ01718 297 aa7.77□□□□□ -1.17
USP40-216ENST00000485943 MC1RQ01726 317 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms