RNA–Protein interactions for RNA: ENST00000485397.1

COL27A1-205, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 5

Gene COL27A1, Length 463 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-205ENST00000485397 MMP11P24347 488 aa18.45■□□□□ 0.54
COL27A1-205ENST00000485397 ITGA3P26006 1051 aa18.45■□□□□ 0.54
COL27A1-205ENST00000485397 PPARGP37231 505 aaPredicted RBP18.45■□□□□ 0.54
COL27A1-205ENST00000485397 GLRBP48167 497 aa18.45■□□□□ 0.54
COL27A1-205ENST00000485397 NKG7Q16617 165 aa18.45■□□□□ 0.54
COL27A1-205ENST00000485397 SEL1L2Q5TEA6 688 aa18.45■□□□□ 0.54
COL27A1-205ENST00000485397 Q6ZS92 163 aa18.45■□□□□ 0.54
COL27A1-205ENST00000485397 COX15Q7KZN9 410 aa18.45■□□□□ 0.54
COL27A1-205ENST00000485397 CUZD1Q86UP6 607 aa18.45■□□□□ 0.54
COL27A1-205ENST00000485397 SLC13A5Q86YT5 568 aaPredicted RBP18.45■□□□□ 0.54
COL27A1-205ENST00000485397 ZADH2Q8N4Q0 377 aa18.45■□□□□ 0.54
COL27A1-205ENST00000485397 DTWD1Q8N5C7 304 aa18.45■□□□□ 0.54
COL27A1-205ENST00000485397 PPHLN1Q8NEY8 458 aaKnown RBP18.45■□□□□ 0.54
COL27A1-205ENST00000485397 SPSB2Q99619 263 aa18.45■□□□□ 0.54
COL27A1-205ENST00000485397 SLC6A20Q9NP91 592 aa18.45■□□□□ 0.54
COL27A1-205ENST00000485397 CUTCQ9NTM9 273 aa18.45■□□□□ 0.54
COL27A1-205ENST00000485397 CATSPERZQ9NTU4 200 aa18.45■□□□□ 0.54
COL27A1-205ENST00000485397 CDC23Q9UJX2 597 aa18.45■□□□□ 0.54
COL27A1-205ENST00000485397 ANAPC5Q9UJX4 755 aa18.45■□□□□ 0.54
COL27A1-205ENST00000485397 FBXL4Q9UKA2 621 aa18.45■□□□□ 0.54
COL27A1-205ENST00000485397 SLC39A10Q9ULF5 831 aa18.45■□□□□ 0.54
COL27A1-205ENST00000485397 NTNG1Q9Y2I2 539 aa18.45■□□□□ 0.54
COL27A1-205ENST00000485397 CSAG2Q9Y5P2 127 aa18.45■□□□□ 0.54
COL27A1-205ENST00000485397 SOCS6O14544 535 aa18.44■□□□□ 0.54
COL27A1-205ENST00000485397 RASGRF2O14827 1237 aa18.44■□□□□ 0.54
COL27A1-205ENST00000485397 DSCR3O14972 297 aa18.44■□□□□ 0.54
COL27A1-205ENST00000485397 PRICKLE3O43900 615 aaPredicted RBP18.44■□□□□ 0.54
COL27A1-205ENST00000485397 ONECUT2O95948 504 aa18.44■□□□□ 0.54
COL27A1-205ENST00000485397 APRTP07741 180 aa18.44■□□□□ 0.54
COL27A1-205ENST00000485397 COL8A1P27658 744 aa18.44■□□□□ 0.54
COL27A1-205ENST00000485397 BDKRB1P46663 353 aa18.44■□□□□ 0.54
COL27A1-205ENST00000485397 OR1D4P47884 311 aa18.44■□□□□ 0.54
COL27A1-205ENST00000485397 AIMP2Q13155 320 aaKnown RBP18.44■□□□□ 0.54
COL27A1-205ENST00000485397 CCSMST1Q4G0I0 132 aa18.44■□□□□ 0.54
COL27A1-205ENST00000485397 ZC3H12BQ5HYM0 836 aaKnown RBP18.44■□□□□ 0.54
COL27A1-205ENST00000485397 AARS2Q5JTZ9 985 aaKnown RBP18.44■□□□□ 0.54
COL27A1-205ENST00000485397 PTRHD1Q6GMV3 140 aaKnown RBP18.44■□□□□ 0.54
COL27A1-205ENST00000485397 SHISA6Q6ZSJ9 500 aa18.44■□□□□ 0.54
COL27A1-205ENST00000485397 TXLNBQ8N3L3 684 aa18.44■□□□□ 0.54
COL27A1-205ENST00000485397 METTL27Q8N6F8 245 aaPredicted RBP18.44■□□□□ 0.54
COL27A1-205ENST00000485397 TM9SF4Q92544 642 aa18.44■□□□□ 0.54
COL27A1-205ENST00000485397 FKBP10Q96AY3 582 aa18.44■□□□□ 0.54
COL27A1-205ENST00000485397 FRMD8P1Q9BZ68 369 aaPredicted RBP18.44■□□□□ 0.54
COL27A1-205ENST00000485397 INTS7Q9NVH2 962 aaKnown RBP18.44■□□□□ 0.54
COL27A1-205ENST00000485397 PCDHGA10Q9Y5H3 936 aa18.44■□□□□ 0.54
COL27A1-205ENST00000485397 COPG1Q9Y678 874 aaKnown RBP18.44■□□□□ 0.54
COL27A1-205ENST00000485397 NFS1Q9Y697 457 aa18.44■□□□□ 0.54
COL27A1-205ENST00000485397 NOTCH2Q04721 2471 aa18.44■□□□□ 0.54
COL27A1-205ENST00000485397 KRT87PA6NCN2 255 aa18.43■□□□□ 0.54
COL27A1-205ENST00000485397 CD3EAPO15446 510 aaKnown RBP18.43■□□□□ 0.54
COL27A1-205ENST00000485397 ALBP02768 609 aa18.43■□□□□ 0.54
COL27A1-205ENST00000485397 PIM1P11309 404 aaPredicted RBP18.43■□□□□ 0.54
COL27A1-205ENST00000485397 RPL22P35268 128 aaKnown RBP18.43■□□□□ 0.54
COL27A1-205ENST00000485397 SESN2P58004 480 aaPredicted RBP18.43■□□□□ 0.54
COL27A1-205ENST00000485397 CRADDP78560 199 aa18.43■□□□□ 0.54
COL27A1-205ENST00000485397 GRM7Q14831 915 aa18.43■□□□□ 0.54
COL27A1-205ENST00000485397 TMED2Q15363 201 aa18.43■□□□□ 0.54
COL27A1-205ENST00000485397 HIF1AQ16665 826 aa18.43■□□□□ 0.54
COL27A1-205ENST00000485397 PCID2Q5JVF3 399 aa18.43■□□□□ 0.54
COL27A1-205ENST00000485397 DENND1AQ8TEH3 1009 aa18.43■□□□□ 0.54
COL27A1-205ENST00000485397 PEX13Q92968 403 aa18.43■□□□□ 0.54
COL27A1-205ENST00000485397 ZNF285Q96NJ3 590 aa18.43■□□□□ 0.54
COL27A1-205ENST00000485397 SELENOSQ9BQE4 189 aa18.43■□□□□ 0.54
COL27A1-205ENST00000485397 P2RY12Q9H244 342 aa18.43■□□□□ 0.54
COL27A1-205ENST00000485397 SOX17Q9H6I2 414 aaPredicted RBP18.43■□□□□ 0.54
COL27A1-205ENST00000485397 PAK5Q9P286 719 aa18.43■□□□□ 0.54
COL27A1-205ENST00000485397 RUVBL2Q9Y230 463 aaKnown RBP18.43■□□□□ 0.54
COL27A1-205ENST00000485397 HS3ST3B1Q9Y662 390 aa18.43■□□□□ 0.54
COL27A1-205ENST00000485397 ANKUB1A6NFN9 424 aa18.42■□□□□ 0.54
COL27A1-205ENST00000485397 WIPF3A6NGB9 483 aa18.42■□□□□ 0.54
COL27A1-205ENST00000485397 CTSVO60911 334 aa18.42■□□□□ 0.54
COL27A1-205ENST00000485397 C1orf105O95561 183 aa18.42■□□□□ 0.54
COL27A1-205ENST00000485397 LDLRP01130 860 aa18.42■□□□□ 0.54
COL27A1-205ENST00000485397 PSMB5P28074 263 aa18.42■□□□□ 0.54
COL27A1-205ENST00000485397 TTPAP49638 278 aa18.42■□□□□ 0.54
COL27A1-205ENST00000485397 TCTE1Q5JU00 501 aa18.42■□□□□ 0.54
COL27A1-205ENST00000485397 YOD1Q5VVQ6 348 aaPredicted RBP18.42■□□□□ 0.54
COL27A1-205ENST00000485397 PRAMEF13Q5VWM6 474 aa18.42■□□□□ 0.54
COL27A1-205ENST00000485397 KIRREL2Q6UWL6 708 aa18.42■□□□□ 0.54
COL27A1-205ENST00000485397 PARP9Q8IXQ6 854 aa18.42■□□□□ 0.54
COL27A1-205ENST00000485397 RNF10Q8N5U6 811 aaKnown RBP18.42■□□□□ 0.54
COL27A1-205ENST00000485397 CCDC89Q8N998 374 aa18.42■□□□□ 0.54
COL27A1-205ENST00000485397 TTC29Q8NA56 475 aaPredicted RBP18.42■□□□□ 0.54
COL27A1-205ENST00000485397 SKA2Q8WVK7 121 aaPredicted RBP18.42■□□□□ 0.54
COL27A1-205ENST00000485397 ZUFSPQ96AP4 578 aa18.42■□□□□ 0.54
COL27A1-205ENST00000485397 RAD51AP1Q96B01 352 aa18.42■□□□□ 0.54
COL27A1-205ENST00000485397 NACC2Q96BF6 587 aa18.42■□□□□ 0.54
COL27A1-205ENST00000485397 SLC26A1Q9H2B4 701 aa18.42■□□□□ 0.54
COL27A1-205ENST00000485397 WDR54Q9H977 334 aa18.42■□□□□ 0.54
COL27A1-205ENST00000485397 TREX1Q9NSU2 369 aa18.42■□□□□ 0.54
COL27A1-205ENST00000485397 CTSFQ9UBX1 484 aa18.42■□□□□ 0.54
COL27A1-205ENST00000485397 TTC7AQ9ULT0 858 aaPredicted RBP18.42■□□□□ 0.54
COL27A1-205ENST00000485397 MAU2Q9Y6X3 613 aa18.42■□□□□ 0.54
COL27A1-205ENST00000485397 MDC1Q14676 2089 aaKnown RBP18.42■□□□□ 0.54
COL27A1-205ENST00000485397 FITM1A5D6W6 292 aa18.41■□□□□ 0.54
COL27A1-205ENST00000485397 NRP2O60462 931 aa18.41■□□□□ 0.54
COL27A1-205ENST00000485397 MED26O95402 600 aa18.41■□□□□ 0.54
COL27A1-205ENST00000485397 CLDN1O95832 211 aa18.41■□□□□ 0.54
COL27A1-205ENST00000485397 NMBRP28336 390 aa18.41■□□□□ 0.54
COL27A1-205ENST00000485397 VSX2P58304 361 aaPredicted RBP18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms