RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 GSTM2P28161 218 aa13.22□□□□□ -0.29
USP42-206ENST00000479544 PPP5CP53041 499 aa13.22□□□□□ -0.29
USP42-206ENST00000479544 RPP38P78345 283 aaKnown RBP13.22□□□□□ -0.29
USP42-206ENST00000479544 SNAP47Q5SQN1 464 aa13.22□□□□□ -0.29
USP42-206ENST00000479544 BTLAQ7Z6A9 289 aa13.22□□□□□ -0.29
USP42-206ENST00000479544 MON1AQ86VX9 555 aa13.22□□□□□ -0.29
USP42-206ENST00000479544 OR4A15Q8NGL6 344 aa13.22□□□□□ -0.29
USP42-206ENST00000479544 CHPT1Q8WUD6 406 aa13.22□□□□□ -0.29
USP42-206ENST00000479544 TMCO6Q96DC7 493 aa13.22□□□□□ -0.29
USP42-206ENST00000479544 TEPSINQ96N21 525 aa13.22□□□□□ -0.29
USP42-206ENST00000479544 TUBA1CQ9BQE3 449 aa13.22□□□□□ -0.29
USP42-206ENST00000479544 TNKS2Q9H2K2 1166 aa13.22□□□□□ -0.29
USP42-206ENST00000479544 MFSD1Q9H3U5 465 aa13.22□□□□□ -0.29
USP42-206ENST00000479544 WDR6Q9NNW5 1121 aaKnown RBP13.22□□□□□ -0.29
USP42-206ENST00000479544 IGSF5Q9NSI5 407 aa13.22□□□□□ -0.29
USP42-206ENST00000479544 TVP23BQ9NYZ1 205 aa13.22□□□□□ -0.29
USP42-206ENST00000479544 IL37Q9NZH6 218 aa13.22□□□□□ -0.29
USP42-206ENST00000479544 MAGEB17A8MXT2 336 aa13.22□□□□□ -0.29
USP42-206ENST00000479544 ITGBL1O95965 494 aaPredicted RBP13.22□□□□□ -0.29
USP42-206ENST00000479544 CD1DP15813 335 aa13.22□□□□□ -0.29
USP42-206ENST00000479544 PAICSP22234 425 aaKnown RBP13.22□□□□□ -0.29
USP42-206ENST00000479544 ST3GAL4Q11206 333 aa13.22□□□□□ -0.29
USP42-206ENST00000479544 TAZQ16635 292 aa13.22□□□□□ -0.29
USP42-206ENST00000479544 UGT8Q16880 541 aa13.22□□□□□ -0.29
USP42-206ENST00000479544 ALFQ53S48 1182 aa13.22□□□□□ -0.29
USP42-206ENST00000479544 ATXN7L2Q5T6C5 722 aaPredicted RBP13.22□□□□□ -0.29
USP42-206ENST00000479544 PPP2R2DQ66LE6 453 aa13.22□□□□□ -0.29
USP42-206ENST00000479544 OR10G2Q8NGC3 310 aa13.22□□□□□ -0.29
USP42-206ENST00000479544 OR5AK3PQ8NH89 298 aa13.22□□□□□ -0.29
USP42-206ENST00000479544 C11orf24Q96F05 449 aaPredicted RBP13.22□□□□□ -0.29
USP42-206ENST00000479544 PYURFQ96I23 114 aa13.22□□□□□ -0.29
USP42-206ENST00000479544 CDK5RAP1Q96SZ6 601 aaKnown RBP13.22□□□□□ -0.29
USP42-206ENST00000479544 TAS2R9Q9NYW1 312 aa13.22□□□□□ -0.29
USP42-206ENST00000479544 TRPM5Q9NZQ8 1165 aa13.22□□□□□ -0.29
USP42-206ENST00000479544 SNX7Q9UNH6 387 aa13.22□□□□□ -0.29
USP42-206ENST00000479544 ERN1O75460 977 aaKnown RBP13.21□□□□□ -0.29
USP42-206ENST00000479544 CLDN9O95484 217 aa13.21□□□□□ -0.29
USP42-206ENST00000479544 S1PR4O95977 384 aa13.21□□□□□ -0.29
USP42-206ENST00000479544 TIE1P35590 1138 aa13.21□□□□□ -0.29
USP42-206ENST00000479544 FKBP1BP68106 108 aa13.21□□□□□ -0.29
USP42-206ENST00000479544 EMX1Q04741 257 aaPredicted RBP13.21□□□□□ -0.29
USP42-206ENST00000479544 CHIT1Q13231 466 aa13.21□□□□□ -0.29
USP42-206ENST00000479544 SLC22A15Q8IZD6 547 aa13.21□□□□□ -0.29
USP42-206ENST00000479544 ZNF671Q8TAW3 534 aa13.21□□□□□ -0.29
USP42-206ENST00000479544 PKP4Q99569 1192 aa13.21□□□□□ -0.29
USP42-206ENST00000479544 ZNF717Q9BY31 904 aaPredicted RBP13.21□□□□□ -0.29
USP42-206ENST00000479544 POLR3BQ9NW08 1133 aaPredicted RBP13.21□□□□□ -0.29
USP42-206ENST00000479544 ZIM2Q9NZV7 527 aa13.21□□□□□ -0.29
USP42-206ENST00000479544 A0A096LPI6 279 aa13.21□□□□□ -0.29
USP42-206ENST00000479544 SNTNA6NMZ2 147 aa13.21□□□□□ -0.29
USP42-206ENST00000479544 DYRK3O43781 588 aa13.21□□□□□ -0.29
USP42-206ENST00000479544 TNFRSF1BP20333 461 aa13.21□□□□□ -0.29
USP42-206ENST00000479544 C21orf33P30042 268 aaPredicted RBP13.21□□□□□ -0.29
USP42-206ENST00000479544 MAGEA6P43360 314 aa13.21□□□□□ -0.29
USP42-206ENST00000479544 KCNC1P48547 511 aa13.21□□□□□ -0.29
USP42-206ENST00000479544 DUSP4Q13115 394 aa13.21□□□□□ -0.29
USP42-206ENST00000479544 CXorf57Q6NSI4 855 aaKnown RBP13.21□□□□□ -0.29
USP42-206ENST00000479544 LARP4Q71RC2 724 aaKnown RBP eCLIP13.21□□□□□ -0.29
USP42-206ENST00000479544 FUNDC1Q8IVP5 155 aa13.21□□□□□ -0.29
USP42-206ENST00000479544 IZUMO1Q8IYV9 350 aa13.21□□□□□ -0.29
USP42-206ENST00000479544 LGI4Q8N135 537 aa13.21□□□□□ -0.29
USP42-206ENST00000479544 MINDY2Q8NBR6 621 aa13.21□□□□□ -0.29
USP42-206ENST00000479544 PPTC7Q8NI37 304 aa13.21□□□□□ -0.29
USP42-206ENST00000479544 SMIM14Q96QK8 99 aa13.21□□□□□ -0.29
USP42-206ENST00000479544 SLC30A2Q9BRI3 323 aa13.21□□□□□ -0.29
USP42-206ENST00000479544 RHOQP17081 205 aa13.21□□□□□ -0.3
USP42-206ENST00000479544 CRHBPP24387 322 aa13.21□□□□□ -0.3
USP42-206ENST00000479544 ITGA1P56199 1179 aa13.21□□□□□ -0.3
USP42-206ENST00000479544 CAMK2GQ13555 558 aaPredicted RBP13.21□□□□□ -0.3
USP42-206ENST00000479544 RFTN2Q52LD8 501 aaPredicted RBP13.21□□□□□ -0.3
USP42-206ENST00000479544 FBXL22Q6P050 247 aa13.21□□□□□ -0.3
USP42-206ENST00000479544 SERPINA9Q86WD7 417 aa13.21□□□□□ -0.3
USP42-206ENST00000479544 MFSD2AQ8NA29 543 aa13.21□□□□□ -0.3
USP42-206ENST00000479544 NUSAP1Q9BXS6 441 aaKnown RBP13.21□□□□□ -0.3
USP42-206ENST00000479544 TXNRD2Q9NNW7 524 aa13.21□□□□□ -0.3
USP42-206ENST00000479544 VAPAQ9P0L0 249 aa13.21□□□□□ -0.3
USP42-206ENST00000479544 ING4Q9UNL4 249 aa13.21□□□□□ -0.3
USP42-206ENST00000479544 HS3ST4Q9Y661 456 aa13.21□□□□□ -0.3
USP42-206ENST00000479544 NAV1Q8NEY1 1877 aa13.2□□□□□ -0.3
USP42-206ENST00000479544 MEIS3P2A8K0S8 358 aa13.2□□□□□ -0.3
USP42-206ENST00000479544 MTX2O75431 263 aa13.2□□□□□ -0.3
USP42-206ENST00000479544 ALPIP09923 528 aa13.2□□□□□ -0.3
USP42-206ENST00000479544 OR56A5P0C7T3 313 aa13.2□□□□□ -0.3
USP42-206ENST00000479544 DNAJA1P31689 397 aaKnown RBP13.2□□□□□ -0.3
USP42-206ENST00000479544 ATP5C1P36542 298 aaKnown RBP13.2□□□□□ -0.3
USP42-206ENST00000479544 NAE1Q13564 534 aa13.2□□□□□ -0.3
USP42-206ENST00000479544 ZNF267Q14586 743 aaPredicted RBP13.2□□□□□ -0.3
USP42-206ENST00000479544 KIAA1191Q96A73 305 aa13.2□□□□□ -0.3
USP42-206ENST00000479544 ZNF486Q96H40 463 aaPredicted RBP13.2□□□□□ -0.3
USP42-206ENST00000479544 HSH2DQ96JZ2 352 aa13.2□□□□□ -0.3
USP42-206ENST00000479544 ALPK1Q96QP1 1244 aa13.2□□□□□ -0.3
USP42-206ENST00000479544 TNFRSF12AQ9NP84 129 aa13.2□□□□□ -0.3
USP42-206ENST00000479544 AIG1Q9NVV5 245 aa13.2□□□□□ -0.3
USP42-206ENST00000479544 AP3M1Q9Y2T2 418 aa13.2□□□□□ -0.3
USP42-206ENST00000479544 SPIN1Q9Y657 262 aaPredicted RBP13.2□□□□□ -0.3
USP42-206ENST00000479544 CDRT1O95170 752 aa13.2□□□□□ -0.3
USP42-206ENST00000479544 ALDH1A1P00352 501 aa13.2□□□□□ -0.3
USP42-206ENST00000479544 YES1P07947 543 aa13.2□□□□□ -0.3
USP42-206ENST00000479544 ANXA4P09525 319 aaPredicted RBP13.2□□□□□ -0.3
USP42-206ENST00000479544 BMP4P12644 408 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms