RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 LRRC4CQ9HCJ2 640 aa11.76□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 SLAMF7Q9NQ25 335 aa11.76□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 EIF2B3Q9NR50 452 aaKnown RBP11.76□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 PAK5Q9P286 719 aa11.76□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 G3BP2Q9UN86 482 aaKnown RBP11.76□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 ZNF148Q9UQR1 794 aa11.76□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 A0A1W2PPV9 198 aa11.75□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 VSTM2BA6NLU5 285 aa11.75□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 TARM1B6A8C7 271 aa11.75□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 AGPSO00116 658 aa11.75□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 CD3EAPO15446 510 aaKnown RBP11.75□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 CTSVO60911 334 aa11.75□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 C1orf105O95561 183 aa11.75□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 GAS8O95995 478 aa11.75□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 APRTP07741 180 aa11.75□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 ZSCAN5DPP0CG00 497 aa11.75□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 MMP11P24347 488 aa11.75□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 TTPAP49638 278 aa11.75□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 ARSFP54793 590 aa11.75□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 PRAMEP78395 509 aa11.75□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 MRPL49Q13405 166 aaKnown RBP11.75□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 RAPSNQ13702 412 aa11.75□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 EIF2S3LQ2VIR3 472 aaKnown RBP11.75□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 AARS2Q5JTZ9 985 aaKnown RBP11.75□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 Q6ZS92 163 aa11.75□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 KRT222Q8N1A0 295 aa11.75□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 MPP5Q8N3R9 675 aa11.75□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 DENND1AQ8TEH3 1009 aa11.75□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 SSC4DQ8WTU2 575 aa11.75□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 DLG3Q92796 817 aa11.75□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 KIFC1Q9BW19 673 aa11.75□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 CATSPERZQ9NTU4 200 aa11.75□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 TXLNGQ9NUQ3 528 aa11.75□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 LUZP4Q9P127 313 aa11.75□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 PLEKHB1Q9UF11 243 aaPredicted RBP11.75□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 NDOR1Q9UHB4 597 aa11.75□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 GPN3Q9UHW5 284 aaPredicted RBP11.75□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 B3GNT3Q9Y2A9 372 aa11.75□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 A0A1B0GX78 115 aa11.74□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 PEX12O00623 359 aa11.74□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 SOCS6O14544 535 aa11.74□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 DSCR3O14972 297 aa11.74□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 KRT86O43790 486 aa11.74□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 KLHL41O60662 606 aa11.74□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 AGFG2O95081 481 aa11.74□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 MATN4O95460 622 aa11.74□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 RPN2P04844 631 aa11.74□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 APOA4P06727 396 aa11.74□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 ERGP11308 486 aa11.74□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 NMBRP28336 390 aa11.74□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 GRIA3P42263 894 aa11.74□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 CRADDP78560 199 aa11.74□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 SNX1Q13596 522 aa11.74□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 SLC9A5Q14940 896 aa11.74□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 NKG7Q16617 165 aa11.74□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 CCSMST1Q4G0I0 132 aa11.74□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 TCTE1Q5JU00 501 aa11.74□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 SEL1L2Q5TEA6 688 aa11.74□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 HIST2H2BCQ6DN03 193 aa11.74□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 KIRREL2Q6UWL6 708 aa11.74□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 ZNF662Q6ZS27 426 aa11.74□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 TTLL10Q6ZVT0 673 aa11.74□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 LRRC6Q86X45 466 aa11.74□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 C2orf73Q8N5S3 287 aaPredicted RBP11.74□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 CLEC1AQ8NC01 280 aa11.74□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 OR2A1Q8NGT9 310 aa11.74□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 TSSK1BQ9BXA7 367 aa11.74□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 IL22Q9GZX6 179 aa11.74□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 MRM3Q9HC36 420 aaKnown RBP11.74□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 ATP13A2Q9NQ11 1180 aa11.74□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 ASF1BQ9NVP2 202 aa11.74□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 CIDEBQ9UHD4 219 aa11.74□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 NFS1Q9Y697 457 aa11.74□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 E7EVH7 732 aa11.73□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 KPNA5O15131 536 aa11.73□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 SRPX2O60687 465 aaPredicted RBP11.73□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 IPO13O94829 963 aaKnown RBP11.73□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 MED26O95402 600 aa11.73□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 DDAH2O95865 285 aa11.73□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 ALAS2P22557 587 aa11.73□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 MCM3P25205 808 aa11.73□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 NPY2RP49146 381 aa11.73□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 ADARP55265 1226 aaKnown RBP11.73□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 AIMP2Q13155 320 aaKnown RBP11.73□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 SF1Q15637 639 aaKnown RBP11.73□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 CYP2A13Q16696 494 aa11.73□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 TYSND1Q2T9J0 566 aa11.73□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 C4orf17Q53FE4 359 aa11.73□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 ZC3H12BQ5HYM0 836 aaKnown RBP11.73□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 CTSL3PQ5NE16 218 aa11.73□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 C4orf22Q6V702 233 aa11.73□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 CUZD1Q86UP6 607 aa11.73□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 IQCKQ8N0W5 287 aa11.73□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 PPHLN1Q8NEY8 458 aaKnown RBP11.73□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 CFAP61Q8NHU2 1237 aa11.73□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 ZDHHC19Q8WVZ1 309 aaPredicted RBP11.73□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 RAD51AP1Q96B01 352 aa11.73□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 PANX3Q96QZ0 392 aa11.73□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 RAB11FIP5Q9BXF6 653 aa11.73□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 SLC6A20Q9NP91 592 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms