RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 OR1L3Q8NH93 324 aa13.7□□□□□ -0.22
VAMP4-203ENST00000474047 FLVCR1-AS1Q8TAF5 88 aa13.7□□□□□ -0.22
VAMP4-203ENST00000474047 FAM45AQ8TCE6 357 aa13.7□□□□□ -0.22
VAMP4-203ENST00000474047 MCOLN3Q8TDD5 553 aa13.7□□□□□ -0.22
VAMP4-203ENST00000474047 EEF1AKMT1Q8WVE0 214 aa13.7□□□□□ -0.22
VAMP4-203ENST00000474047 SNRNP27Q8WVK2 155 aaKnown RBP13.7□□□□□ -0.22
VAMP4-203ENST00000474047 ASB11Q8WXH4 323 aa13.7□□□□□ -0.22
VAMP4-203ENST00000474047 CDKL2Q92772 493 aa13.7□□□□□ -0.22
VAMP4-203ENST00000474047 MR1Q95460 341 aa13.7□□□□□ -0.22
VAMP4-203ENST00000474047 PLAC1Q9HBJ0 212 aa13.7□□□□□ -0.22
VAMP4-203ENST00000474047 FAM60AQ9NP50 221 aa13.7□□□□□ -0.22
VAMP4-203ENST00000474047 LHX9Q9NQ69 397 aa13.7□□□□□ -0.22
VAMP4-203ENST00000474047 ABCF3Q9NUQ8 709 aa13.7□□□□□ -0.22
VAMP4-203ENST00000474047 CROTQ9UKG9 612 aa13.7□□□□□ -0.22
VAMP4-203ENST00000474047 KLHL20Q9Y2M5 609 aa13.7□□□□□ -0.22
VAMP4-203ENST00000474047 MED16Q9Y2X0 877 aa13.7□□□□□ -0.22
VAMP4-203ENST00000474047 VWA7Q9Y334 891 aa13.7□□□□□ -0.22
VAMP4-203ENST00000474047 PCDHB3Q9Y5E6 796 aa13.7□□□□□ -0.22
VAMP4-203ENST00000474047 CTAGE15A4D2H0 777 aa13.7□□□□□ -0.22
VAMP4-203ENST00000474047 FKBP9O95302 570 aa13.7□□□□□ -0.22
VAMP4-203ENST00000474047 HBQ1P09105 142 aa13.7□□□□□ -0.22
VAMP4-203ENST00000474047 MSL3P1P0C860 447 aa13.7□□□□□ -0.22
VAMP4-203ENST00000474047 CTAGE8P0CG41 777 aa13.7□□□□□ -0.22
VAMP4-203ENST00000474047 MAGP20916 626 aa13.7□□□□□ -0.22
VAMP4-203ENST00000474047 CDKN2DP55273 166 aa13.7□□□□□ -0.22
VAMP4-203ENST00000474047 IL2P60568 153 aa13.7□□□□□ -0.22
VAMP4-203ENST00000474047 MC1RQ01726 317 aa13.7□□□□□ -0.22
VAMP4-203ENST00000474047 ARHGAP19Q14CB8 494 aa13.7□□□□□ -0.22
VAMP4-203ENST00000474047 CYP2A13Q16696 494 aa13.7□□□□□ -0.22
VAMP4-203ENST00000474047 DEFB110Q30KQ9 67 aa13.7□□□□□ -0.22
VAMP4-203ENST00000474047 FIGLAQ6QHK4 219 aa13.7□□□□□ -0.22
VAMP4-203ENST00000474047 PAQR3Q6TCH7 311 aa13.7□□□□□ -0.22
VAMP4-203ENST00000474047 C3orf62Q6ZUJ4 267 aa13.7□□□□□ -0.22
VAMP4-203ENST00000474047 PIWIL4Q7Z3Z4 852 aaKnown RBP13.7□□□□□ -0.22
VAMP4-203ENST00000474047 CTAGE6Q86UF2 777 aa13.7□□□□□ -0.22
VAMP4-203ENST00000474047 CTAGE4Q8IX94 777 aa13.7□□□□□ -0.22
VAMP4-203ENST00000474047 SYTL1Q8IYJ3 562 aa13.7□□□□□ -0.22
VAMP4-203ENST00000474047 SMPDL3AQ92484 453 aa13.7□□□□□ -0.22
VAMP4-203ENST00000474047 PKP4Q99569 1192 aa13.7□□□□□ -0.22
VAMP4-203ENST00000474047 MIPEPQ99797 713 aa13.7□□□□□ -0.22
VAMP4-203ENST00000474047 ARHGAP9Q9BRR9 750 aa13.7□□□□□ -0.22
VAMP4-203ENST00000474047 ACTR5Q9H9F9 607 aaPredicted RBP13.7□□□□□ -0.22
VAMP4-203ENST00000474047 MOCS1Q9NZB8 636 aa13.7□□□□□ -0.22
VAMP4-203ENST00000474047 KCND3Q9UK17 655 aa13.7□□□□□ -0.22
VAMP4-203ENST00000474047 PLCL2Q9UPR0 1127 aa13.7□□□□□ -0.22
VAMP4-203ENST00000474047 FAM208BQ5VWN6 2430 aa13.69□□□□□ -0.22
VAMP4-203ENST00000474047 ERVH48-1M5A8F1 160 aa13.69□□□□□ -0.22
VAMP4-203ENST00000474047 MYO1CO00159 1063 aa13.69□□□□□ -0.22
VAMP4-203ENST00000474047 WT1P19544 449 aaPredicted RBP13.69□□□□□ -0.22
VAMP4-203ENST00000474047 CMPK1P30085 196 aa13.69□□□□□ -0.22
VAMP4-203ENST00000474047 SSTR1P30872 391 aa13.69□□□□□ -0.22
VAMP4-203ENST00000474047 PNLIPRP1P54315 467 aa13.69□□□□□ -0.22
VAMP4-203ENST00000474047 SLC12A2P55011 1212 aa13.69□□□□□ -0.22
VAMP4-203ENST00000474047 CYP4F2P78329 520 aa13.69□□□□□ -0.22
VAMP4-203ENST00000474047 GUCY2DQ02846 1103 aa13.69□□□□□ -0.22
VAMP4-203ENST00000474047 ZIC1Q15915 447 aa13.69□□□□□ -0.22
VAMP4-203ENST00000474047 ZC3H12BQ5HYM0 836 aaKnown RBP13.69□□□□□ -0.22
VAMP4-203ENST00000474047 EEF1AKMT2Q5JPI9 291 aaKnown RBP13.69□□□□□ -0.22
VAMP4-203ENST00000474047 THEMIS2Q5TEJ8 643 aa13.69□□□□□ -0.22
VAMP4-203ENST00000474047 PRAMEF17Q5VTA0 474 aa13.69□□□□□ -0.22
VAMP4-203ENST00000474047 C16orf46Q6P387 395 aa13.69□□□□□ -0.22
VAMP4-203ENST00000474047 SUSD1Q6UWL2 747 aa13.69□□□□□ -0.22
VAMP4-203ENST00000474047 CYHR1Q6ZMK1 362 aa13.69□□□□□ -0.22
VAMP4-203ENST00000474047 SLC26A11Q86WA9 606 aa13.69□□□□□ -0.22
VAMP4-203ENST00000474047 HMGCLL1Q8TB92 370 aa13.69□□□□□ -0.22
VAMP4-203ENST00000474047 FBXO25Q8TCJ0 367 aa13.69□□□□□ -0.22
VAMP4-203ENST00000474047 DENND1AQ8TEH3 1009 aa13.69□□□□□ -0.22
VAMP4-203ENST00000474047 ZUFSPQ96AP4 578 aa13.69□□□□□ -0.22
VAMP4-203ENST00000474047 LINGO1Q96FE5 620 aa13.69□□□□□ -0.22
VAMP4-203ENST00000474047 SLC45A3Q96JT2 553 aa13.69□□□□□ -0.22
VAMP4-203ENST00000474047 ACAT2Q9BWD1 397 aa13.69□□□□□ -0.22
VAMP4-203ENST00000474047 CHRNA10Q9GZZ6 450 aa13.69□□□□□ -0.22
VAMP4-203ENST00000474047 IL17BQ9UHF5 180 aa13.69□□□□□ -0.22
VAMP4-203ENST00000474047 AP1M2Q9Y6Q5 423 aa13.69□□□□□ -0.22
VAMP4-203ENST00000474047 ESYT3A0FGR9 886 aa13.68□□□□□ -0.22
VAMP4-203ENST00000474047 GFYI3L273 518 aa13.68□□□□□ -0.22
VAMP4-203ENST00000474047 ZNF749O43361 778 aa13.68□□□□□ -0.22
VAMP4-203ENST00000474047 C8GP07360 202 aa13.68□□□□□ -0.22
VAMP4-203ENST00000474047 GSTA2P09210 222 aa13.68□□□□□ -0.22
VAMP4-203ENST00000474047 HIST1H2AGP0C0S8 130 aaPredicted RBP13.68□□□□□ -0.22
VAMP4-203ENST00000474047 PRKAR1AP10644 381 aa13.68□□□□□ -0.22
VAMP4-203ENST00000474047 HIST1H2ADP20671 130 aa13.68□□□□□ -0.22
VAMP4-203ENST00000474047 AGXTP21549 392 aa13.68□□□□□ -0.22
VAMP4-203ENST00000474047 PSMB5P28074 263 aa13.68□□□□□ -0.22
VAMP4-203ENST00000474047 GRIA3P42263 894 aa13.68□□□□□ -0.22
VAMP4-203ENST00000474047 RPS15P62841 145 aaKnown RBP13.68□□□□□ -0.22
VAMP4-203ENST00000474047 ILF2Q12905 390 aaKnown RBP13.68□□□□□ -0.22
VAMP4-203ENST00000474047 CBLBQ13191 982 aa13.68□□□□□ -0.22
VAMP4-203ENST00000474047 DNASE1L3Q13609 305 aa13.68□□□□□ -0.22
VAMP4-203ENST00000474047 COL9A2Q14055 689 aaPredicted RBP13.68□□□□□ -0.22
VAMP4-203ENST00000474047 FASTKQ14296 549 aaKnown RBP13.68□□□□□ -0.22
VAMP4-203ENST00000474047 NAA25Q14CX7 972 aa13.68□□□□□ -0.22
VAMP4-203ENST00000474047 TRADDQ15628 312 aa13.68□□□□□ -0.22
VAMP4-203ENST00000474047 SPNS2Q8IVW8 549 aa13.68□□□□□ -0.22
VAMP4-203ENST00000474047 FBXO15Q8NCQ5 510 aaPredicted RBP13.68□□□□□ -0.22
VAMP4-203ENST00000474047 CT55Q8WUE5 264 aa13.68□□□□□ -0.22
VAMP4-203ENST00000474047 STARD8Q92502 1023 aa13.68□□□□□ -0.22
VAMP4-203ENST00000474047 VPS39Q96JC1 886 aa13.68□□□□□ -0.22
VAMP4-203ENST00000474047 HIST1H2AHQ96KK5 128 aa13.68□□□□□ -0.22
VAMP4-203ENST00000474047 HIST1H2AJQ99878 128 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms