RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 F7P08709 466 aaPredicted RBP15.11■□□□□ 0.01
CCDC88B-205ENST00000472524 OGNP20774 298 aaKnown RBP15.11■□□□□ 0.01
CCDC88B-205ENST00000472524 OTX2P32243 289 aa15.11■□□□□ 0.01
CCDC88B-205ENST00000472524 PGDP52209 483 aa15.11■□□□□ 0.01
CCDC88B-205ENST00000472524 DHX34Q14147 1143 aaKnown RBP15.11■□□□□ 0.01
CCDC88B-205ENST00000472524 SF1Q15637 639 aaKnown RBP15.11■□□□□ 0.01
CCDC88B-205ENST00000472524 TLDC1Q6P9B6 456 aa15.11■□□□□ 0.01
CCDC88B-205ENST00000472524 RAB42Q8N4Z0 105 aa15.11■□□□□ 0.01
CCDC88B-205ENST00000472524 ZBTB2Q8N680 514 aa15.11■□□□□ 0.01
CCDC88B-205ENST00000472524 PROKR1Q8TCW9 393 aa15.11■□□□□ 0.01
CCDC88B-205ENST00000472524 RAD51AP1Q96B01 352 aa15.11■□□□□ 0.01
CCDC88B-205ENST00000472524 GBP5Q96PP8 586 aa15.11■□□□□ 0.01
CCDC88B-205ENST00000472524 NAP1L3Q99457 506 aaPredicted RBP15.11■□□□□ 0.01
CCDC88B-205ENST00000472524 NDC1Q9BTX1 674 aa15.11■□□□□ 0.01
CCDC88B-205ENST00000472524 RAB11FIP5Q9BXF6 653 aa15.11■□□□□ 0.01
CCDC88B-205ENST00000472524 INTS7Q9NVH2 962 aaKnown RBP15.11■□□□□ 0.01
CCDC88B-205ENST00000472524 IFT80Q9P2H3 777 aaPredicted RBP15.11■□□□□ 0.01
CCDC88B-205ENST00000472524 NDOR1Q9UHB4 597 aa15.11■□□□□ 0.01
CCDC88B-205ENST00000472524 SRPK3Q9UPE1 567 aa15.11■□□□□ 0.01
CCDC88B-205ENST00000472524 RP1L1Q8IWN7 2480 aaPredicted RBP15.11■□□□□ 0.01
CCDC88B-205ENST00000472524 USP9YO00507 2555 aaPredicted RBP15.11■□□□□ 0.01
CCDC88B-205ENST00000472524 UTP20O75691 2785 aaKnown RBP15.1■□□□□ 0.01
CCDC88B-205ENST00000472524 USP9XQ93008 2570 aaPredicted RBP15.1■□□□□ 0.01
CCDC88B-205ENST00000472524 E5RI56 91 aa15.1■□□□□ 0.01
CCDC88B-205ENST00000472524 H3BMM5 538 aa15.1■□□□□ 0.01
CCDC88B-205ENST00000472524 ESR1P03372 595 aa15.1■□□□□ 0.01
CCDC88B-205ENST00000472524 CHRM3P20309 590 aa15.1■□□□□ 0.01
CCDC88B-205ENST00000472524 PSMB5P28074 263 aa15.1■□□□□ 0.01
CCDC88B-205ENST00000472524 GRIA3P42263 894 aa15.1■□□□□ 0.01
CCDC88B-205ENST00000472524 DCDP81605 110 aaKnown RBP15.1■□□□□ 0.01
CCDC88B-205ENST00000472524 ATP1A4Q13733 1029 aa15.1■□□□□ 0.01
CCDC88B-205ENST00000472524 CYP1B1Q16678 543 aa15.1■□□□□ 0.01
CCDC88B-205ENST00000472524 HIST2H2BCQ6DN03 193 aa15.1■□□□□ 0.01
CCDC88B-205ENST00000472524 ZNF470Q6ECI4 717 aa15.1■□□□□ 0.01
CCDC88B-205ENST00000472524 NEPROQ6NW34 567 aa15.1■□□□□ 0.01
CCDC88B-205ENST00000472524 FIGLAQ6QHK4 219 aa15.1■□□□□ 0.01
CCDC88B-205ENST00000472524 CENPUQ71F23 418 aa15.1■□□□□ 0.01
CCDC88B-205ENST00000472524 RAB43Q86YS6 212 aa15.1■□□□□ 0.01
CCDC88B-205ENST00000472524 CILP2Q8IUL8 1156 aa15.1■□□□□ 0.01
CCDC88B-205ENST00000472524 MCATQ8IVS2 390 aaKnown RBP15.1■□□□□ 0.01
CCDC88B-205ENST00000472524 REXO1L1PQ8IX06 675 aa15.1■□□□□ 0.01
CCDC88B-205ENST00000472524 COG1Q8WTW3 980 aa15.1■□□□□ 0.01
CCDC88B-205ENST00000472524 SERPINB12Q96P63 405 aa15.1■□□□□ 0.01
CCDC88B-205ENST00000472524 OSBPL9Q96SU4 736 aa15.1■□□□□ 0.01
CCDC88B-205ENST00000472524 TCF12Q99081 682 aa15.1■□□□□ 0.01
CCDC88B-205ENST00000472524 C17orf62Q9BQA9 187 aa15.1■□□□□ 0.01
CCDC88B-205ENST00000472524 DHRS4Q9BTZ2 278 aa15.1■□□□□ 0.01
CCDC88B-205ENST00000472524 XAB2Q9HCS7 855 aaKnown RBP15.1■□□□□ 0.01
CCDC88B-205ENST00000472524 GALPQ9UBC7 116 aa15.1■□□□□ 0.01
CCDC88B-205ENST00000472524 PTRH2Q9Y3E5 179 aaKnown RBP15.1■□□□□ 0.01
CCDC88B-205ENST00000472524 MRFAP1Q9Y605 127 aa15.1■□□□□ 0.01
CCDC88B-205ENST00000472524 FAM237BA0A1B0GVD1 139 aa15.09■□□□□ 0.01
CCDC88B-205ENST00000472524 CTAGE9A4FU28 777 aa15.09■□□□□ 0.01
CCDC88B-205ENST00000472524 SDR42E2A6NKP2 422 aa15.09■□□□□ 0.01
CCDC88B-205ENST00000472524 A6NL46 340 aa15.09■□□□□ 0.01
CCDC88B-205ENST00000472524 TTLL8A6PVC2 850 aa15.09■□□□□ 0.01
CCDC88B-205ENST00000472524 ZNF185O15231 689 aa15.09■□□□□ 0.01
CCDC88B-205ENST00000472524 PHF2O75151 1096 aa15.09■□□□□ 0.01
CCDC88B-205ENST00000472524 MLNP12872 115 aa15.09■□□□□ 0.01
CCDC88B-205ENST00000472524 PKMP14618 531 aaKnown RBP15.09■□□□□ 0.01
CCDC88B-205ENST00000472524 ALAS2P22557 587 aa15.09■□□□□ 0.01
CCDC88B-205ENST00000472524 GNLYP22749 145 aa15.09■□□□□ 0.01
CCDC88B-205ENST00000472524 CCNFP41002 786 aa15.09■□□□□ 0.01
CCDC88B-205ENST00000472524 FOLR3P41439 243 aa15.09■□□□□ 0.01
CCDC88B-205ENST00000472524 FOXL2P58012 376 aa15.09■□□□□ 0.01
CCDC88B-205ENST00000472524 THOC5Q13769 683 aaKnown RBP15.09■□□□□ 0.01
CCDC88B-205ENST00000472524 NADK2Q4G0N4 442 aa15.09■□□□□ 0.01
CCDC88B-205ENST00000472524 NKAIN1Q4KMZ8 207 aa15.09■□□□□ 0.01
CCDC88B-205ENST00000472524 ANKRD20A4Q4UJ75 823 aa15.09■□□□□ 0.01
CCDC88B-205ENST00000472524 ACSBG2Q5FVE4 666 aa15.09■□□□□ 0.01
CCDC88B-205ENST00000472524 FCRL6Q6DN72 434 aa15.09■□□□□ 0.01
CCDC88B-205ENST00000472524 LURAP1LQ8IV03 231 aa15.09■□□□□ 0.01
CCDC88B-205ENST00000472524 MCUQ8NE86 351 aa15.09■□□□□ 0.01
CCDC88B-205ENST00000472524 MAGEC3Q8TD91 643 aa15.09■□□□□ 0.01
CCDC88B-205ENST00000472524 DENND1AQ8TEH3 1009 aa15.09■□□□□ 0.01
CCDC88B-205ENST00000472524 DLG3Q92796 817 aa15.09■□□□□ 0.01
CCDC88B-205ENST00000472524 MIPEPQ99797 713 aa15.09■□□□□ 0.01
CCDC88B-205ENST00000472524 GRPEL1Q9HAV7 217 aa15.09■□□□□ 0.01
CCDC88B-205ENST00000472524 FBXO6Q9NRD1 293 aaPredicted RBP15.09■□□□□ 0.01
CCDC88B-205ENST00000472524 PCDHGA9Q9Y5G4 932 aaKnown RBP15.09■□□□□ 0.01
CCDC88B-205ENST00000472524 MAD1L1Q9Y6D9 718 aa15.09■□□□□ 0.01
CCDC88B-205ENST00000472524 SHANK1Q9Y566 2161 aa15.08■□□□□ 0.01
CCDC88B-205ENST00000472524 GOLGA6L10A0A0M3HER8 536 aa15.08■□□□□ 0
CCDC88B-205ENST00000472524 PRICKLE3O43900 615 aaPredicted RBP15.08■□□□□ 0
CCDC88B-205ENST00000472524 VPS4BO75351 444 aa15.08■□□□□ 0
CCDC88B-205ENST00000472524 KLF7O75840 302 aaPredicted RBP15.08■□□□□ 0
CCDC88B-205ENST00000472524 USP1O94782 785 aa15.08■□□□□ 0
CCDC88B-205ENST00000472524 MCM3P25205 808 aa15.08■□□□□ 0
CCDC88B-205ENST00000472524 ATP5DP30049 168 aa15.08■□□□□ 0
CCDC88B-205ENST00000472524 ADARP55265 1226 aaKnown RBP15.08■□□□□ 0
CCDC88B-205ENST00000472524 FASTKQ14296 549 aaKnown RBP15.08■□□□□ 0
CCDC88B-205ENST00000472524 GBX1Q14549 363 aa15.08■□□□□ 0
CCDC88B-205ENST00000472524 KLHL38Q2WGJ6 581 aa15.08■□□□□ 0
CCDC88B-205ENST00000472524 ZC3H12BQ5HYM0 836 aaKnown RBP15.08■□□□□ 0
CCDC88B-205ENST00000472524 ARMC3Q5W041 872 aa15.08■□□□□ 0
CCDC88B-205ENST00000472524 TTLL10Q6ZVT0 673 aa15.08■□□□□ 0
CCDC88B-205ENST00000472524 DENND6AQ8IWF6 608 aa15.08■□□□□ 0
CCDC88B-205ENST00000472524 FDCSPQ8NFU4 85 aa15.08■□□□□ 0
CCDC88B-205ENST00000472524 CPT1CQ8TCG5 803 aa15.08■□□□□ 0
CCDC88B-205ENST00000472524 GRK7Q8WTQ7 553 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms