RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 SLC47A1Q96FL8 570 aa18.58■□□□□ 0.56
VIM-203ENST00000469543 TOR3AQ9H497 397 aa18.58■□□□□ 0.56
VIM-203ENST00000469543 ASAH2Q9NR71 780 aa18.58■□□□□ 0.56
VIM-203ENST00000469543 ITM2BQ9Y287 266 aa18.58■□□□□ 0.56
VIM-203ENST00000469543 DENND4CQ5VZ89 1909 aa18.58■□□□□ 0.56
VIM-203ENST00000469543 GNGT2O14610 69 aa18.57■□□□□ 0.56
VIM-203ENST00000469543 DEAF1O75398 565 aaPredicted RBP18.57■□□□□ 0.56
VIM-203ENST00000469543 DIRAS1O95057 198 aa18.57■□□□□ 0.56
VIM-203ENST00000469543 CTSLP07711 333 aa18.57■□□□□ 0.56
VIM-203ENST00000469543 SPIDRQ14159 915 aa18.57■□□□□ 0.56
VIM-203ENST00000469543 USP51Q70EK9 711 aa18.57■□□□□ 0.56
VIM-203ENST00000469543 ZDHHC13Q8IUH4 622 aa18.57■□□□□ 0.56
VIM-203ENST00000469543 BARD1Q99728 777 aaKnown RBP18.57■□□□□ 0.56
VIM-203ENST00000469543 RIOK2Q9BVS4 552 aaKnown RBP18.57■□□□□ 0.56
VIM-203ENST00000469543 GORASP2Q9H8Y8 452 aa18.57■□□□□ 0.56
VIM-203ENST00000469543 KCNE1BA0A087WTH5 132 aa18.57■□□□□ 0.56
VIM-203ENST00000469543 YY2O15391 372 aa18.57■□□□□ 0.56
VIM-203ENST00000469543 CTSAP10619 480 aa18.57■□□□□ 0.56
VIM-203ENST00000469543 PABPC1P11940 636 aaKnown RBP18.57■□□□□ 0.56
VIM-203ENST00000469543 PTPN6P29350 595 aa18.57■□□□□ 0.56
VIM-203ENST00000469543 CTSCP53634 463 aa18.57■□□□□ 0.56
VIM-203ENST00000469543 GDPD4Q6W3E5 623 aa18.57■□□□□ 0.56
VIM-203ENST00000469543 NECAB2Q7Z6G3 386 aa18.57■□□□□ 0.56
VIM-203ENST00000469543 C12orf43Q96C57 262 aaKnown RBP18.57■□□□□ 0.56
VIM-203ENST00000469543 AMBRA1Q9C0C7 1298 aa18.57■□□□□ 0.56
VIM-203ENST00000469543 ADNPQ9H2P0 1102 aa18.57■□□□□ 0.56
VIM-203ENST00000469543 CXorf21Q9HAI6 301 aa18.57■□□□□ 0.56
VIM-203ENST00000469543 PRM3Q9NNZ6 103 aa18.57■□□□□ 0.56
VIM-203ENST00000469543 IFT80Q9P2H3 777 aaPredicted RBP18.57■□□□□ 0.56
VIM-203ENST00000469543 IGLV3-16A0A075B6K0 115 aa18.57■□□□□ 0.56
VIM-203ENST00000469543 TRBV5-3A0A0A0MS03 114 aa18.57■□□□□ 0.56
VIM-203ENST00000469543 CREG1O75629 220 aa18.57■□□□□ 0.56
VIM-203ENST00000469543 ATE1O95260 518 aa18.57■□□□□ 0.56
VIM-203ENST00000469543 PFKLP17858 780 aa18.57■□□□□ 0.56
VIM-203ENST00000469543 S100A3P33764 101 aa18.57■□□□□ 0.56
VIM-203ENST00000469543 ALDH3A2P51648 485 aa18.57■□□□□ 0.56
VIM-203ENST00000469543 PFN3P60673 137 aa18.57■□□□□ 0.56
VIM-203ENST00000469543 RAB39AQ14964 217 aa18.57■□□□□ 0.56
VIM-203ENST00000469543 DOK6Q6PKX4 331 aa18.57■□□□□ 0.56
VIM-203ENST00000469543 MED8Q96G25 268 aa18.57■□□□□ 0.56
VIM-203ENST00000469543 PCDHGA8Q9Y5G5 932 aa18.57■□□□□ 0.56
VIM-203ENST00000469543 ABHD14A-ACY1A0A1B0GW23 586 aa18.56■□□□□ 0.56
VIM-203ENST00000469543 ZBBXA8MT70 800 aa18.56■□□□□ 0.56
VIM-203ENST00000469543 GRM6O15303 877 aa18.56■□□□□ 0.56
VIM-203ENST00000469543 PRSS23O95084 383 aa18.56■□□□□ 0.56
VIM-203ENST00000469543 MAD2L1Q13257 205 aaPredicted RBP18.56■□□□□ 0.56
VIM-203ENST00000469543 DAG1Q14118 895 aa18.56■□□□□ 0.56
VIM-203ENST00000469543 GRIN2CQ14957 1233 aa18.56■□□□□ 0.56
VIM-203ENST00000469543 EEF1AKMT2Q5JPI9 291 aaKnown RBP18.56■□□□□ 0.56
VIM-203ENST00000469543 CES5AQ6NT32 575 aa18.56■□□□□ 0.56
VIM-203ENST00000469543 CYP2U1Q7Z449 544 aa18.56■□□□□ 0.56
VIM-203ENST00000469543 ING5Q8WYH8 240 aa18.56■□□□□ 0.56
VIM-203ENST00000469543 TOX2Q96NM4 488 aa18.56■□□□□ 0.56
VIM-203ENST00000469543 TCF25Q9BQ70 676 aa18.56■□□□□ 0.56
VIM-203ENST00000469543 DPH2Q9BQC3 489 aaPredicted RBP18.56■□□□□ 0.56
VIM-203ENST00000469543 FAM83DQ9H4H8 585 aa18.56■□□□□ 0.56
VIM-203ENST00000469543 SLC25A13Q9UJS0 675 aa18.56■□□□□ 0.56
VIM-203ENST00000469543 FBXO10Q9UK96 956 aa18.56■□□□□ 0.56
VIM-203ENST00000469543 BTBD3Q9Y2F9 522 aa18.56■□□□□ 0.56
VIM-203ENST00000469543 PPIL1Q9Y3C6 166 aa18.56■□□□□ 0.56
VIM-203ENST00000469543 TULP3O75386 442 aa18.56■□□□□ 0.56
VIM-203ENST00000469543 LINC00271P0C7V0 271 aa18.56■□□□□ 0.56
VIM-203ENST00000469543 PDHA2P29803 388 aa18.56■□□□□ 0.56
VIM-203ENST00000469543 CASP9P55211 416 aa18.56■□□□□ 0.56
VIM-203ENST00000469543 CLDN8P56748 225 aa18.56■□□□□ 0.56
VIM-203ENST00000469543 MEP1AQ16819 746 aa18.56■□□□□ 0.56
VIM-203ENST00000469543 LRRC26Q2I0M4 334 aa18.56■□□□□ 0.56
VIM-203ENST00000469543 PLPP4Q5VZY2 271 aa18.56■□□□□ 0.56
VIM-203ENST00000469543 TMEM26Q6ZUK4 368 aa18.56■□□□□ 0.56
VIM-203ENST00000469543 RBM23Q86U06 439 aaKnown RBP18.56■□□□□ 0.56
VIM-203ENST00000469543 IRF7Q92985 503 aa18.56■□□□□ 0.56
VIM-203ENST00000469543 FAM120BQ96EK7 910 aaKnown RBP18.56■□□□□ 0.56
VIM-203ENST00000469543 CD320Q9NPF0 282 aa18.56■□□□□ 0.56
VIM-203ENST00000469543 PCDH12Q9NPG4 1184 aa18.56■□□□□ 0.56
VIM-203ENST00000469543 PKD2L2Q9NZM6 624 aa18.56■□□□□ 0.56
VIM-203ENST00000469543 MYO15AQ9UKN7 3530 aa18.55■□□□□ 0.56
VIM-203ENST00000469543 E7EQ34 232 aa18.55■□□□□ 0.56
VIM-203ENST00000469543 PER2O15055 1255 aa18.55■□□□□ 0.56
VIM-203ENST00000469543 MOSPD3O75425 235 aa18.55■□□□□ 0.56
VIM-203ENST00000469543 PBLDP30039 288 aaPredicted RBP18.55■□□□□ 0.56
VIM-203ENST00000469543 SLC6A12P48065 614 aa18.55■□□□□ 0.56
VIM-203ENST00000469543 REM2Q8IYK8 340 aaPredicted RBP18.55■□□□□ 0.56
VIM-203ENST00000469543 CLECL1Q8IZS7 167 aa18.55■□□□□ 0.56
VIM-203ENST00000469543 VNN3Q9NY84 501 aa18.55■□□□□ 0.56
VIM-203ENST00000469543 ANTXRLA6NF34 631 aa18.55■□□□□ 0.56
VIM-203ENST00000469543 GRXCR2A6NFK2 248 aa18.55■□□□□ 0.56
VIM-203ENST00000469543 TRIM64A6NGJ6 449 aa18.55■□□□□ 0.56
VIM-203ENST00000469543 GFYI3L273 518 aa18.55■□□□□ 0.56
VIM-203ENST00000469543 TSPAN6O43657 245 aa18.55■□□□□ 0.56
VIM-203ENST00000469543 ETHE1O95571 254 aa18.55■□□□□ 0.56
VIM-203ENST00000469543 CLTBP09497 229 aa18.55■□□□□ 0.56
VIM-203ENST00000469543 THRBP10828 461 aa18.55■□□□□ 0.56
VIM-203ENST00000469543 AGXTP21549 392 aa18.55■□□□□ 0.56
VIM-203ENST00000469543 GZMMP51124 257 aa18.55■□□□□ 0.56
VIM-203ENST00000469543 VAC14Q08AM6 782 aa18.55■□□□□ 0.56
VIM-203ENST00000469543 FRG2Q64ET8 278 aa18.55■□□□□ 0.56
VIM-203ENST00000469543 TRIM74Q86UV6 250 aa18.55■□□□□ 0.56
VIM-203ENST00000469543 MICU2Q8IYU8 434 aa18.55■□□□□ 0.56
VIM-203ENST00000469543 GLB1L3Q8NCI6 653 aaPredicted RBP18.55■□□□□ 0.56
VIM-203ENST00000469543 TNIP2Q8NFZ5 429 aa18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms