RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 ATP6V0D1P61421 351 aa11.54□□□□□ -0.56
VPS13D-204ENST00000469054 TAP2Q03519 686 aa11.54□□□□□ -0.56
VPS13D-204ENST00000469054 SLC5A12Q1EHB4 618 aa11.54□□□□□ -0.56
VPS13D-204ENST00000469054 FOXR1Q6PIV2 292 aa11.54□□□□□ -0.56
VPS13D-204ENST00000469054 ADAMTSL2Q86TH1 951 aa11.54□□□□□ -0.56
VPS13D-204ENST00000469054 TBC1D1Q86TI0 1168 aaPredicted RBP11.54□□□□□ -0.56
VPS13D-204ENST00000469054 SYTL1Q8IYJ3 562 aa11.54□□□□□ -0.56
VPS13D-204ENST00000469054 ZNF480Q8WV37 535 aa11.54□□□□□ -0.56
VPS13D-204ENST00000469054 SMPDL3AQ92484 453 aa11.54□□□□□ -0.56
VPS13D-204ENST00000469054 SLC41A2Q96JW4 573 aa11.54□□□□□ -0.56
VPS13D-204ENST00000469054 SLC46A1Q96NT5 459 aa11.54□□□□□ -0.56
VPS13D-204ENST00000469054 TMEM121BQ9BXQ6 578 aaPredicted RBP11.54□□□□□ -0.56
VPS13D-204ENST00000469054 UNKQ9C0B0 810 aaKnown RBP11.54□□□□□ -0.56
VPS13D-204ENST00000469054 OCIAD1Q9NX40 245 aa11.54□□□□□ -0.56
VPS13D-204ENST00000469054 ARL15Q9NXU5 204 aa11.54□□□□□ -0.56
VPS13D-204ENST00000469054 CAMSAP3Q9P1Y5 1249 aaPredicted RBP11.54□□□□□ -0.56
VPS13D-204ENST00000469054 STOX2Q9P2F5 926 aaPredicted RBP11.54□□□□□ -0.56
VPS13D-204ENST00000469054 PISDQ9UG56 409 aa11.54□□□□□ -0.56
VPS13D-204ENST00000469054 TLK1Q9UKI8 766 aa11.54□□□□□ -0.56
VPS13D-204ENST00000469054 NCOR2Q9Y618 2525 aa11.53□□□□□ -0.56
VPS13D-204ENST00000469054 COL27A1Q8IZC6 1860 aaPredicted RBP11.53□□□□□ -0.56
VPS13D-204ENST00000469054 A0A0J9YY10 115 aa11.53□□□□□ -0.56
VPS13D-204ENST00000469054 IQANK1A0A1B0GTG1 560 aa11.53□□□□□ -0.56
VPS13D-204ENST00000469054 SLC9B1P1A6NJY1 282 aa11.53□□□□□ -0.56
VPS13D-204ENST00000469054 B4E171 279 aa11.53□□□□□ -0.56
VPS13D-204ENST00000469054 TRIM49D1C9J1S8 452 aa11.53□□□□□ -0.56
VPS13D-204ENST00000469054 DXOO77932 396 aaKnown RBP11.53□□□□□ -0.56
VPS13D-204ENST00000469054 TNFSF15O95150 251 aa11.53□□□□□ -0.56
VPS13D-204ENST00000469054 FKBP9O95302 570 aa11.53□□□□□ -0.56
VPS13D-204ENST00000469054 LTA4HP09960 611 aaKnown RBP11.53□□□□□ -0.56
VPS13D-204ENST00000469054 ST6GAL1P15907 406 aa11.53□□□□□ -0.56
VPS13D-204ENST00000469054 RBMS1P29558 406 aaKnown RBP11.53□□□□□ -0.56
VPS13D-204ENST00000469054 GMPRP36959 345 aa11.53□□□□□ -0.56
VPS13D-204ENST00000469054 ETV5P41161 510 aa11.53□□□□□ -0.56
VPS13D-204ENST00000469054 TSPAN7P41732 249 aa11.53□□□□□ -0.56
VPS13D-204ENST00000469054 MLLT3P42568 568 aaPredicted RBP11.53□□□□□ -0.56
VPS13D-204ENST00000469054 ARL4DP49703 201 aa11.53□□□□□ -0.56
VPS13D-204ENST00000469054 HSD11B2P80365 405 aa11.53□□□□□ -0.56
VPS13D-204ENST00000469054 MC2RQ01718 297 aa11.53□□□□□ -0.56
VPS13D-204ENST00000469054 DLG1Q12959 904 aa11.53□□□□□ -0.56
VPS13D-204ENST00000469054 TSNQ15631 228 aaKnown RBP11.53□□□□□ -0.56
VPS13D-204ENST00000469054 SF1Q15637 639 aaKnown RBP11.53□□□□□ -0.56
VPS13D-204ENST00000469054 PPP1R3AQ16821 1122 aa11.53□□□□□ -0.56
VPS13D-204ENST00000469054 TAF1BQ53T94 588 aaPredicted RBP11.53□□□□□ -0.56
VPS13D-204ENST00000469054 AGTRAPQ6RW13 159 aa11.53□□□□□ -0.56
VPS13D-204ENST00000469054 IGF2-ASQ6U949 168 aa11.53□□□□□ -0.56
VPS13D-204ENST00000469054 SUSD1Q6UWL2 747 aa11.53□□□□□ -0.56
VPS13D-204ENST00000469054 MBOAT1Q6ZNC8 495 aa11.53□□□□□ -0.56
VPS13D-204ENST00000469054 TIFABQ6ZNK6 161 aa11.53□□□□□ -0.56
VPS13D-204ENST00000469054 TRIM73Q86UV7 250 aa11.53□□□□□ -0.56
VPS13D-204ENST00000469054 FAM129CQ86XR2 697 aa11.53□□□□□ -0.56
VPS13D-204ENST00000469054 FAM20CQ8IXL6 584 aa11.53□□□□□ -0.56
VPS13D-204ENST00000469054 LRRC56Q8IYG6 542 aaPredicted RBP11.53□□□□□ -0.56
VPS13D-204ENST00000469054 CNPY4Q8N129 248 aa11.53□□□□□ -0.56
VPS13D-204ENST00000469054 D2HGDHQ8N465 521 aa11.53□□□□□ -0.56
VPS13D-204ENST00000469054 BMPERQ8N8U9 685 aa11.53□□□□□ -0.56
VPS13D-204ENST00000469054 PPFIBP2Q8ND30 876 aa11.53□□□□□ -0.56
VPS13D-204ENST00000469054 KIAA1191Q96A73 305 aa11.53□□□□□ -0.56
VPS13D-204ENST00000469054 MTBPQ96DY7 904 aa11.53□□□□□ -0.56
VPS13D-204ENST00000469054 TRAPPC9Q96Q05 1148 aa11.53□□□□□ -0.56
VPS13D-204ENST00000469054 PPCSQ9HAB8 311 aa11.53□□□□□ -0.56
VPS13D-204ENST00000469054 NMRAL1Q9HBL8 299 aa11.53□□□□□ -0.56
VPS13D-204ENST00000469054 IGSF5Q9NSI5 407 aa11.53□□□□□ -0.56
VPS13D-204ENST00000469054 SIDT1Q9NXL6 827 aaKnown RBP11.53□□□□□ -0.56
VPS13D-204ENST00000469054 UTP6Q9NYH9 597 aaKnown RBP11.53□□□□□ -0.56
VPS13D-204ENST00000469054 PSMC3IPQ9P2W1 217 aaPredicted RBP11.53□□□□□ -0.56
VPS13D-204ENST00000469054 BTRCQ9Y297 605 aa11.53□□□□□ -0.56
VPS13D-204ENST00000469054 OARD1Q9Y530 152 aa11.53□□□□□ -0.56
VPS13D-204ENST00000469054 PCDHB11Q9Y5F2 797 aa11.53□□□□□ -0.56
VPS13D-204ENST00000469054 MAP3K7O43318 606 aa11.52□□□□□ -0.57
VPS13D-204ENST00000469054 BRINP1O60477 761 aa11.52□□□□□ -0.57
VPS13D-204ENST00000469054 GUCA1CO95843 209 aa11.52□□□□□ -0.57
VPS13D-204ENST00000469054 ANXA5P08758 320 aa11.52□□□□□ -0.57
VPS13D-204ENST00000469054 NUDT17P0C025 328 aa11.52□□□□□ -0.57
VPS13D-204ENST00000469054 PVRP15151 417 aa11.52□□□□□ -0.57
VPS13D-204ENST00000469054 FOLR1P15328 257 aa11.52□□□□□ -0.57
VPS13D-204ENST00000469054 MAPK10P53779 464 aa11.52□□□□□ -0.57
VPS13D-204ENST00000469054 SH3BP2P78314 561 aa11.52□□□□□ -0.57
VPS13D-204ENST00000469054 CDKL1Q00532 357 aa11.52□□□□□ -0.57
VPS13D-204ENST00000469054 IRF9Q00978 393 aa11.52□□□□□ -0.57
VPS13D-204ENST00000469054 ACY1Q03154 408 aa11.52□□□□□ -0.57
VPS13D-204ENST00000469054 CYP4F3Q08477 520 aa11.52□□□□□ -0.57
VPS13D-204ENST00000469054 TSTA3Q13630 321 aaPredicted RBP11.52□□□□□ -0.57
VPS13D-204ENST00000469054 TGFBIQ15582 683 aa11.52□□□□□ -0.57
VPS13D-204ENST00000469054 FAM83EQ2M2I3 478 aa11.52□□□□□ -0.57
VPS13D-204ENST00000469054 TMTC4Q5T4D3 741 aa11.52□□□□□ -0.57
VPS13D-204ENST00000469054 FRA10AC1Q70Z53 315 aa11.52□□□□□ -0.57
VPS13D-204ENST00000469054 ISCA2Q86U28 154 aa11.52□□□□□ -0.57
VPS13D-204ENST00000469054 TDRPQ86YL5 185 aa11.52□□□□□ -0.57
VPS13D-204ENST00000469054 CENPLQ8N0S6 344 aaPredicted RBP11.52□□□□□ -0.57
VPS13D-204ENST00000469054 MREGQ8N565 214 aa11.52□□□□□ -0.57
VPS13D-204ENST00000469054 OR2A1Q8NGT9 310 aa11.52□□□□□ -0.57
VPS13D-204ENST00000469054 STAG3L4Q8TBR4 150 aa11.52□□□□□ -0.57
VPS13D-204ENST00000469054 KCTD4Q8WVF5 259 aa11.52□□□□□ -0.57
VPS13D-204ENST00000469054 ATL1Q8WXF7 558 aa11.52□□□□□ -0.57
VPS13D-204ENST00000469054 USP7Q93009 1102 aa11.52□□□□□ -0.57
VPS13D-204ENST00000469054 PTERQ96BW5 349 aa11.52□□□□□ -0.57
VPS13D-204ENST00000469054 FBXL8Q96CD0 374 aa11.52□□□□□ -0.57
VPS13D-204ENST00000469054 NXNL1Q96CM4 212 aa11.52□□□□□ -0.57
VPS13D-204ENST00000469054 TAAR9Q96RI9 348 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 238 ms