RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	SLC2A6	Q9UGQ3	507 aa		10.69	□□□□□ -0.7
PTPN7-204	ENST00000462815	CDC23	Q9UJX2	597 aa		10.69	□□□□□ -0.7
PTPN7-204	ENST00000462815	ENTPD4	Q9Y227	616 aa		10.69	□□□□□ -0.7
PTPN7-204	ENST00000462815		A0A1W2PQ72	361 aa		10.68	□□□□□ -0.7
PTPN7-204	ENST00000462815	TCRBV7S2A1N4T	A0A589	114 aa		10.68	□□□□□ -0.7
PTPN7-204	ENST00000462815	GRID2IP	A4D2P6	1211 aa		10.68	□□□□□ -0.7
PTPN7-204	ENST00000462815	BTNL10	A8MVZ5	291 aa		10.68	□□□□□ -0.7
PTPN7-204	ENST00000462815	ZG16	O60844	167 aa		10.68	□□□□□ -0.7
PTPN7-204	ENST00000462815	STK10	O94804	968 aa	Known RBP	10.68	□□□□□ -0.7
PTPN7-204	ENST00000462815	KLHL18	O94889	574 aa		10.68	□□□□□ -0.7
PTPN7-204	ENST00000462815	CD9	P21926	228 aa		10.68	□□□□□ -0.7
PTPN7-204	ENST00000462815	ALAS2	P22557	587 aa		10.68	□□□□□ -0.7
PTPN7-204	ENST00000462815	SOX11	P35716	441 aa		10.68	□□□□□ -0.7
PTPN7-204	ENST00000462815	ARSF	P54793	590 aa		10.68	□□□□□ -0.7
PTPN7-204	ENST00000462815	RWDD2B	P57060	319 aa		10.68	□□□□□ -0.7
PTPN7-204	ENST00000462815	ELOA	Q14241	798 aa	Known RBP	10.68	□□□□□ -0.7
PTPN7-204	ENST00000462815	CCDC181	Q5TID7	509 aa		10.68	□□□□□ -0.7
PTPN7-204	ENST00000462815	AGAP7P	Q5VUJ5	663 aa		10.68	□□□□□ -0.7
PTPN7-204	ENST00000462815	YOD1	Q5VVQ6	348 aa	Predicted RBP	10.68	□□□□□ -0.7
PTPN7-204	ENST00000462815	RPUSD3	Q6P087	351 aa	Known RBP	10.68	□□□□□ -0.7
PTPN7-204	ENST00000462815	SHISA6	Q6ZSJ9	500 aa		10.68	□□□□□ -0.7
PTPN7-204	ENST00000462815	CCDC170	Q8IYT3	715 aa		10.68	□□□□□ -0.7
PTPN7-204	ENST00000462815	OR52K1	Q8NGK4	314 aa		10.68	□□□□□ -0.7
PTPN7-204	ENST00000462815	OR2L8	Q8NGY9	312 aa		10.68	□□□□□ -0.7
PTPN7-204	ENST00000462815	DNAJB14	Q8TBM8	379 aa		10.68	□□□□□ -0.7
PTPN7-204	ENST00000462815	DENND1A	Q8TEH3	1009 aa		10.68	□□□□□ -0.7
PTPN7-204	ENST00000462815	COG1	Q8WTW3	980 aa		10.68	□□□□□ -0.7
PTPN7-204	ENST00000462815	PSMF1	Q92530	271 aa		10.68	□□□□□ -0.7
PTPN7-204	ENST00000462815	AGAP4	Q96P64	663 aa		10.68	□□□□□ -0.7
PTPN7-204	ENST00000462815	FERMT1	Q9BQL6	677 aa		10.68	□□□□□ -0.7
PTPN7-204	ENST00000462815	LACRT	Q9GZZ8	138 aa		10.68	□□□□□ -0.7
PTPN7-204	ENST00000462815	LHPP	Q9H008	270 aa		10.68	□□□□□ -0.7
PTPN7-204	ENST00000462815	SOX17	Q9H6I2	414 aa	Predicted RBP	10.68	□□□□□ -0.7
PTPN7-204	ENST00000462815	MRM3	Q9HC36	420 aa	Known RBP	10.68	□□□□□ -0.7
PTPN7-204	ENST00000462815	IMPACT	Q9P2X3	320 aa		10.68	□□□□□ -0.7
PTPN7-204	ENST00000462815	CIDEB	Q9UHD4	219 aa		10.68	□□□□□ -0.7
PTPN7-204	ENST00000462815	RIMKLB	Q9ULI2	386 aa		10.68	□□□□□ -0.7
PTPN7-204	ENST00000462815	OSGIN2	Q9Y236	505 aa		10.68	□□□□□ -0.7
PTPN7-204	ENST00000462815	CNTRL	Q7Z7A1	2325 aa		10.68	□□□□□ -0.7
PTPN7-204	ENST00000462815	IGLV3-12	A0A075B6K2	115 aa		10.67	□□□□□ -0.7
PTPN7-204	ENST00000462815		A0A1W2PPV9	198 aa		10.67	□□□□□ -0.7
PTPN7-204	ENST00000462815	KRT87P	A6NCN2	255 aa		10.67	□□□□□ -0.7
PTPN7-204	ENST00000462815	IQCF5	A8MTL0	148 aa		10.67	□□□□□ -0.7
PTPN7-204	ENST00000462815	RASGRF2	O14827	1237 aa		10.67	□□□□□ -0.7
PTPN7-204	ENST00000462815	SUN1	O94901	812 aa		10.67	□□□□□ -0.7
PTPN7-204	ENST00000462815	SLCO2B1	O94956	709 aa		10.67	□□□□□ -0.7
PTPN7-204	ENST00000462815	TJP3	O95049	919 aa		10.67	□□□□□ -0.7
PTPN7-204	ENST00000462815	S1PR4	O95977	384 aa		10.67	□□□□□ -0.7
PTPN7-204	ENST00000462815	GOT2	P00505	430 aa	Known RBP	10.67	□□□□□ -0.7
PTPN7-204	ENST00000462815	OR56A5	P0C7T3	313 aa		10.67	□□□□□ -0.7
PTPN7-204	ENST00000462815	AOAH	P28039	575 aa		10.67	□□□□□ -0.7
PTPN7-204	ENST00000462815	GRIA1	P42261	906 aa		10.67	□□□□□ -0.7
PTPN7-204	ENST00000462815	GRIA3	P42263	894 aa		10.67	□□□□□ -0.7
PTPN7-204	ENST00000462815	OR1D4	P47884	311 aa		10.67	□□□□□ -0.7
PTPN7-204	ENST00000462815	EFNA3	P52797	238 aa		10.67	□□□□□ -0.7
PTPN7-204	ENST00000462815	MFAP5	Q13361	173 aa		10.67	□□□□□ -0.7
PTPN7-204	ENST00000462815	TUBB8	Q3ZCM7	444 aa		10.67	□□□□□ -0.7
PTPN7-204	ENST00000462815	CCSMST1	Q4G0I0	132 aa		10.67	□□□□□ -0.7
PTPN7-204	ENST00000462815	SYTL3	Q4VX76	610 aa		10.67	□□□□□ -0.7
PTPN7-204	ENST00000462815	ATG9B	Q674R7	924 aa		10.67	□□□□□ -0.7
PTPN7-204	ENST00000462815	FRMPD2B	Q6IN97	320 aa		10.67	□□□□□ -0.7
PTPN7-204	ENST00000462815	FIGLA	Q6QHK4	219 aa		10.67	□□□□□ -0.7
PTPN7-204	ENST00000462815	UNC5D	Q6UXZ4	953 aa		10.67	□□□□□ -0.7
PTPN7-204	ENST00000462815	ARHGEF18	Q6ZSZ5	1173 aa		10.67	□□□□□ -0.7
PTPN7-204	ENST00000462815	TAX1BP1	Q86VP1	789 aa		10.67	□□□□□ -0.7
PTPN7-204	ENST00000462815	DCUN1D3	Q8IWE4	304 aa		10.67	□□□□□ -0.7
PTPN7-204	ENST00000462815	PARP9	Q8IXQ6	854 aa		10.67	□□□□□ -0.7
PTPN7-204	ENST00000462815	ARHGEF39	Q8N4T4	335 aa		10.67	□□□□□ -0.7
PTPN7-204	ENST00000462815	C2orf73	Q8N5S3	287 aa	Predicted RBP	10.67	□□□□□ -0.7
PTPN7-204	ENST00000462815	METTL27	Q8N6F8	245 aa	Predicted RBP	10.67	□□□□□ -0.7
PTPN7-204	ENST00000462815	AMER2	Q8N7J2	671 aa		10.67	□□□□□ -0.7
PTPN7-204	ENST00000462815	CATSPER1	Q8NEC5	780 aa		10.67	□□□□□ -0.7
PTPN7-204	ENST00000462815	HMGCLL1	Q8TB92	370 aa		10.67	□□□□□ -0.7
PTPN7-204	ENST00000462815	HDAC10	Q969S8	669 aa		10.67	□□□□□ -0.7
PTPN7-204	ENST00000462815	RELT	Q969Z4	430 aa		10.67	□□□□□ -0.7
PTPN7-204	ENST00000462815	MARVELD3	Q96A59	401 aa		10.67	□□□□□ -0.7
PTPN7-204	ENST00000462815	C10orf90	Q96M02	699 aa		10.67	□□□□□ -0.7
PTPN7-204	ENST00000462815	PHF12	Q96QT6	1004 aa		10.67	□□□□□ -0.7
PTPN7-204	ENST00000462815	TAAR6	Q96RI8	345 aa		10.67	□□□□□ -0.7
PTPN7-204	ENST00000462815	TMEM121	Q9BTD3	319 aa		10.67	□□□□□ -0.7
PTPN7-204	ENST00000462815	UNK	Q9C0B0	810 aa	Known RBP	10.67	□□□□□ -0.7
PTPN7-204	ENST00000462815	SEMA3G	Q9NS98	782 aa		10.67	□□□□□ -0.7
PTPN7-204	ENST00000462815	NXT1	Q9UKK6	140 aa	Known RBP	10.67	□□□□□ -0.7
PTPN7-204	ENST00000462815	CPAMD8	Q8IZJ3	1885 aa		10.67	□□□□□ -0.7
PTPN7-204	ENST00000462815	HIVEP1	P15822	2718 aa		10.66	□□□□□ -0.7
PTPN7-204	ENST00000462815	SOWAHD	A6NJG2	315 aa		10.66	□□□□□ -0.7
PTPN7-204	ENST00000462815	TARM1	B6A8C7	271 aa		10.66	□□□□□ -0.7
PTPN7-204	ENST00000462815	PCDH17	O14917	1159 aa		10.66	□□□□□ -0.7
PTPN7-204	ENST00000462815	ZNF189	O75820	626 aa	Predicted RBP	10.66	□□□□□ -0.7
PTPN7-204	ENST00000462815	HP	P00738	406 aa		10.66	□□□□□ -0.7
PTPN7-204	ENST00000462815	COX6A1	P12074	109 aa		10.66	□□□□□ -0.7
PTPN7-204	ENST00000462815	PSMB5	P28074	263 aa		10.66	□□□□□ -0.7
PTPN7-204	ENST00000462815	GRN	P28799	593 aa	Known RBP	10.66	□□□□□ -0.7
PTPN7-204	ENST00000462815	CSE1L	P55060	971 aa	Known RBP	10.66	□□□□□ -0.7
PTPN7-204	ENST00000462815	YBX1	P67809	324 aa	Known RBP	10.66	□□□□□ -0.7
PTPN7-204	ENST00000462815	KLC1	Q07866	573 aa		10.66	□□□□□ -0.7
PTPN7-204	ENST00000462815	HSPA14	Q0VDF9	509 aa		10.66	□□□□□ -0.7
PTPN7-204	ENST00000462815	CDC16	Q13042	620 aa		10.66	□□□□□ -0.7
PTPN7-204	ENST00000462815	GRM7	Q14831	915 aa		10.66	□□□□□ -0.7
PTPN7-204	ENST00000462815	TLR1	Q15399	786 aa		10.66	□□□□□ -0.7

Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms