RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 TUBBP07437 444 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 PRPS1L1P21108 318 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 RPS12P25398 132 aaKnown RBP4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 HIBADHP31937 336 aaKnown RBP4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 STX2P32856 288 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 DCDC1P59894 354 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 GNGT1P63211 74 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 TUBB4BP68371 445 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 PSPHP78330 225 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 TRAF2Q12933 501 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 POU6F1Q14863 301 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 KPNB1Q14974 876 aaKnown RBP4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 RAB30Q15771 203 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 HKDC1Q2TB90 917 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 HIKESHIQ53FT3 197 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 EMC4Q5J8M3 183 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 ATPAF1Q5TC12 328 aaPredicted RBP4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 SLX4IPQ5VYV7 408 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 BSPRYQ5W0U4 402 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 C18orf63Q68DL7 685 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 PET117Q6UWS5 81 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 NET1Q7Z628 596 aaPredicted RBP4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 BIVMQ86UB2 503 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 SLCO6A1Q86UG4 719 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 RCOR2Q8IZ40 523 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 KDM1BQ8NB78 822 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 OR8J1Q8NGP2 316 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 OR2T34Q8NGX1 318 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 DDX55Q8NHQ9 600 aaKnown RBP eCLIP4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 PAQR8Q8TEZ7 354 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 FAM120BQ96EK7 910 aaKnown RBP4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 CALML4Q96GE6 196 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 TMEM80Q96HE8 168 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 SNX22Q96L94 193 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 MRGPRX4Q96LA9 322 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 AMNQ9BXJ7 453 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 R3HDMLQ9H3Y0 253 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 UNKLQ9H9P5 680 aaKnown RBP4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 PLGRKTQ9HBL7 147 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 CHMP1AQ9HD42 196 aaPredicted RBP4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 EIF2B3Q9NR50 452 aaKnown RBP4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 PNPLA3Q9NST1 481 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 RBM12Q9NTZ6 932 aaKnown RBP4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 TRNAU1APQ9NX07 287 aaKnown RBP4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 DDX43Q9NXZ2 648 aaKnown RBP4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 MPP6Q9NZW5 540 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 ADAMTS6Q9UKP5 1117 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 TSPAN16Q9UKR8 245 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 ZHX2Q9Y6X8 837 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 CNTNAP2Q9UHC6 1331 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 A0A075B6Q4 140 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 A0A1W2PQ27 194 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 A0A1W2PQ64 194 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 A0A1W2PQC6 194 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 A0A1W2PQD8 194 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 TCRBV5S2A0A599 114 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 ILVBLA1L0T0 632 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 LRRC53A6NM62 1247 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 TMEM233B4DJY2 109 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 PRR23D1E9PI22 279 aaPredicted RBP4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 H0Y8G0 127 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 HSF2BPO75031 334 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 TJP3O95049 919 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 MPIG6BO95866 241 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 IL1BP01584 269 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 EPOP01588 193 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 APOA1P02647 267 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 ALPPP05187 535 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 PGK2P07205 417 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 GP1BAP07359 652 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 MMP2P08253 660 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 H2AFB2P0C5Z0 115 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 OCM2P0CE71 109 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 OCMP0CE72 109 aaPredicted RBP4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 PRR23D2P0DMB1 279 aaPredicted RBP4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 OR8G3PP0DMU2 310 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 ALPPL2P10696 532 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 TCF4P15884 667 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 GNAZP19086 355 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 MSH3P20585 1137 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 HNF1AP20823 631 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 MAGP20916 626 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 F8A1P23610 371 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 OR1E1P30953 314 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 EIF2DP41214 584 aaKnown RBP4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 GYG1P46976 350 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 MEOX2P50222 304 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 SEC24CP53992 1094 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 PRKAA2P54646 552 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 EPHB4P54760 987 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 PRMT2P55345 433 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 ACTBP60709 375 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 YPEL5P62699 121 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 ACTA2P62736 377 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 ACTG1P63261 375 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 ACTG2P63267 376 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 ACTC1P68032 377 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 ACTA1P68133 377 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 MVKQ03426 396 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 PON3Q15166 354 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms