RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 CRTC2Q53ET0 693 aaPredicted RBP17.46■□□□□ 0.39
SQSTM1-204ENST00000453046 TEDDM1Q5T9Z0 273 aa17.46■□□□□ 0.39
SQSTM1-204ENST00000453046 NEPROQ6NW34 567 aa17.46■□□□□ 0.39
SQSTM1-204ENST00000453046 ATG14Q6ZNE5 492 aa17.46■□□□□ 0.39
SQSTM1-204ENST00000453046 CARFQ8N187 725 aa17.46■□□□□ 0.39
SQSTM1-204ENST00000453046 PHC3Q8NDX5 983 aa17.46■□□□□ 0.39
SQSTM1-204ENST00000453046 DCAKDQ8WVC6 231 aa17.46■□□□□ 0.39
SQSTM1-204ENST00000453046 HDAC10Q969S8 669 aa17.46■□□□□ 0.39
SQSTM1-204ENST00000453046 TTC1Q99614 292 aa17.46■□□□□ 0.39
SQSTM1-204ENST00000453046 OR52A5Q9H2C5 316 aa17.46■□□□□ 0.39
SQSTM1-204ENST00000453046 FANCEQ9HB96 536 aa17.46■□□□□ 0.39
SQSTM1-204ENST00000453046 IL1RAPL1Q9NZN1 696 aa17.46■□□□□ 0.39
SQSTM1-204ENST00000453046 TXNDC16Q9P2K2 825 aa17.46■□□□□ 0.39
SQSTM1-204ENST00000453046 TLDC2A0PJX2 215 aa17.45■□□□□ 0.38
SQSTM1-204ENST00000453046 CCDC162PA2VCL2 907 aa17.45■□□□□ 0.38
SQSTM1-204ENST00000453046 OR51F1A6NGY5 319 aa17.45■□□□□ 0.38
SQSTM1-204ENST00000453046 HMGB1P1B2RPK0 211 aaPredicted RBP17.45■□□□□ 0.38
SQSTM1-204ENST00000453046 MAP3K7O43318 606 aa17.45■□□□□ 0.38
SQSTM1-204ENST00000453046 SYF2O95926 243 aaKnown RBP17.45■□□□□ 0.38
SQSTM1-204ENST00000453046 GOT2P00505 430 aaKnown RBP17.45■□□□□ 0.38
SQSTM1-204ENST00000453046 FTH1P02794 183 aa17.45■□□□□ 0.38
SQSTM1-204ENST00000453046 OGNP20774 298 aaKnown RBP17.45■□□□□ 0.38
SQSTM1-204ENST00000453046 CNTFP26441 200 aa17.45■□□□□ 0.38
SQSTM1-204ENST00000453046 PREPP48147 710 aa17.45■□□□□ 0.38
SQSTM1-204ENST00000453046 CSE1LP55060 971 aaKnown RBP17.45■□□□□ 0.38
SQSTM1-204ENST00000453046 PRKG2Q13237 762 aa17.45■□□□□ 0.38
SQSTM1-204ENST00000453046 DNASE1L3Q13609 305 aa17.45■□□□□ 0.38
SQSTM1-204ENST00000453046 ITIH4Q14624 930 aa17.45■□□□□ 0.38
SQSTM1-204ENST00000453046 TMED2Q15363 201 aa17.45■□□□□ 0.38
SQSTM1-204ENST00000453046 GPR19Q15760 415 aa17.45■□□□□ 0.38
SQSTM1-204ENST00000453046 ZNF470Q6ECI4 717 aa17.45■□□□□ 0.38
SQSTM1-204ENST00000453046 PACS1Q6VY07 963 aa17.45■□□□□ 0.38
SQSTM1-204ENST00000453046 PTRH1Q86Y79 214 aaKnown RBP17.45■□□□□ 0.38
SQSTM1-204ENST00000453046 TMEM126BQ8IUX1 230 aa17.45■□□□□ 0.38
SQSTM1-204ENST00000453046 OR6P1Q8NGX9 317 aa17.45■□□□□ 0.38
SQSTM1-204ENST00000453046 TFGQ92734 400 aaPredicted RBP17.45■□□□□ 0.38
SQSTM1-204ENST00000453046 MVB12BQ9H7P6 319 aa17.45■□□□□ 0.38
SQSTM1-204ENST00000453046 IARS2Q9NSE4 1012 aaKnown RBP17.45■□□□□ 0.38
SQSTM1-204ENST00000453046 CTNNAL1Q9UBT7 734 aa17.45■□□□□ 0.38
SQSTM1-204ENST00000453046 POMT2Q9UKY4 750 aa17.45■□□□□ 0.38
SQSTM1-204ENST00000453046 IQANK1A0A1B0GTG1 560 aa17.44■□□□□ 0.38
SQSTM1-204ENST00000453046 PIPSLA2A3N6 862 aa17.44■□□□□ 0.38
SQSTM1-204ENST00000453046 SLC9B1P1A6NJY1 282 aa17.44■□□□□ 0.38
SQSTM1-204ENST00000453046 LIN7AO14910 233 aaPredicted RBP17.44■□□□□ 0.38
SQSTM1-204ENST00000453046 SUV39H1O43463 412 aa17.44■□□□□ 0.38
SQSTM1-204ENST00000453046 CPNE3O75131 537 aaKnown RBP17.44■□□□□ 0.38
SQSTM1-204ENST00000453046 SCRG1O75711 98 aa17.44■□□□□ 0.38
SQSTM1-204ENST00000453046 PIAS1O75925 651 aa17.44■□□□□ 0.38
SQSTM1-204ENST00000453046 KRT38O76015 456 aa17.44■□□□□ 0.38
SQSTM1-204ENST00000453046 SLC1A2P43004 574 aa17.44■□□□□ 0.38
SQSTM1-204ENST00000453046 SYTL3Q4VX76 610 aa17.44■□□□□ 0.38
SQSTM1-204ENST00000453046 TNFAIP8L3Q5GJ75 292 aa17.44■□□□□ 0.38
SQSTM1-204ENST00000453046 LGSNQ5TDP6 509 aa17.44■□□□□ 0.38
SQSTM1-204ENST00000453046 LYPLAL1Q5VWZ2 237 aa17.44■□□□□ 0.38
SQSTM1-204ENST00000453046 MRNIPQ6NTE8 343 aa17.44■□□□□ 0.38
SQSTM1-204ENST00000453046 C2CD4AQ8NCU7 369 aaPredicted RBP17.44■□□□□ 0.38
SQSTM1-204ENST00000453046 OR52E1Q8NGJ3 308 aa17.44■□□□□ 0.38
SQSTM1-204ENST00000453046 OR8K5Q8NH50 307 aa17.44■□□□□ 0.38
SQSTM1-204ENST00000453046 C9orf43Q8TAL5 461 aaPredicted RBP17.44■□□□□ 0.38
SQSTM1-204ENST00000453046 CT55Q8WUE5 264 aa17.44■□□□□ 0.38
SQSTM1-204ENST00000453046 ELMO1Q92556 727 aa17.44■□□□□ 0.38
SQSTM1-204ENST00000453046 ATP6V1G3Q96LB4 118 aa17.44■□□□□ 0.38
SQSTM1-204ENST00000453046 PPM1MQ96MI6 270 aa17.44■□□□□ 0.38
SQSTM1-204ENST00000453046 HGH1Q9BTY7 390 aa17.44■□□□□ 0.38
SQSTM1-204ENST00000453046 TRIM4Q9C037 500 aa17.44■□□□□ 0.38
SQSTM1-204ENST00000453046 TWSG1Q9GZX9 223 aa17.44■□□□□ 0.38
SQSTM1-204ENST00000453046 CENPHQ9H3R5 247 aa17.44■□□□□ 0.38
SQSTM1-204ENST00000453046 TFB2MQ9H5Q4 396 aaKnown RBP17.44■□□□□ 0.38
SQSTM1-204ENST00000453046 C1GALT1Q9NS00 363 aa17.44■□□□□ 0.38
SQSTM1-204ENST00000453046 CATSPERZQ9NTU4 200 aa17.44■□□□□ 0.38
SQSTM1-204ENST00000453046 SLC17A6Q9P2U8 582 aa17.44■□□□□ 0.38
SQSTM1-204ENST00000453046 POLHQ9Y253 713 aa17.44■□□□□ 0.38
SQSTM1-204ENST00000453046 CDC14CA4D256 554 aa17.43■□□□□ 0.38
SQSTM1-204ENST00000453046 C21orf140B9A014 251 aa17.43■□□□□ 0.38
SQSTM1-204ENST00000453046 F8W8V4 182 aa17.43■□□□□ 0.38
SQSTM1-204ENST00000453046 GOLGA8TH3BQL2 631 aa17.43■□□□□ 0.38
SQSTM1-204ENST00000453046 CREG1O75629 220 aa17.43■□□□□ 0.38
SQSTM1-204ENST00000453046 OR56A5P0C7T3 313 aa17.43■□□□□ 0.38
SQSTM1-204ENST00000453046 PRDX3P30048 256 aaKnown RBP17.43■□□□□ 0.38
SQSTM1-204ENST00000453046 FOXN2P32314 431 aa17.43■□□□□ 0.38
SQSTM1-204ENST00000453046 RPS15P62841 145 aaKnown RBP17.43■□□□□ 0.38
SQSTM1-204ENST00000453046 KCNC4Q03721 635 aa17.43■□□□□ 0.38
SQSTM1-204ENST00000453046 TYSND1Q2T9J0 566 aa17.43■□□□□ 0.38
SQSTM1-204ENST00000453046 ZNF658BQ4V348 819 aaPredicted RBP17.43■□□□□ 0.38
SQSTM1-204ENST00000453046 TTMPQ5BVD1 217 aa17.43■□□□□ 0.38
SQSTM1-204ENST00000453046 AARS2Q5JTZ9 985 aaKnown RBP17.43■□□□□ 0.38
SQSTM1-204ENST00000453046 GRTP1Q5TC63 336 aa17.43■□□□□ 0.38
SQSTM1-204ENST00000453046 FAM199XQ6PEV8 388 aaPredicted RBP17.43■□□□□ 0.38
SQSTM1-204ENST00000453046 AMIGO1Q86WK6 493 aa17.43■□□□□ 0.38
SQSTM1-204ENST00000453046 CILP2Q8IUL8 1156 aa17.43■□□□□ 0.38
SQSTM1-204ENST00000453046 OTUD6BQ8N6M0 293 aa17.43■□□□□ 0.38
SQSTM1-204ENST00000453046 OR4L1Q8NH43 312 aa17.43■□□□□ 0.38
SQSTM1-204ENST00000453046 ARL8AQ96BM9 186 aa17.43■□□□□ 0.38
SQSTM1-204ENST00000453046 TLCD1Q96CP7 247 aa17.43■□□□□ 0.38
SQSTM1-204ENST00000453046 ZNF501Q96CX3 271 aaPredicted RBP17.43■□□□□ 0.38
SQSTM1-204ENST00000453046 MTBPQ96DY7 904 aa17.43■□□□□ 0.38
SQSTM1-204ENST00000453046 MRRFQ96E11 262 aaKnown RBP17.43■□□□□ 0.38
SQSTM1-204ENST00000453046 RBBP8Q99708 897 aa17.43■□□□□ 0.38
SQSTM1-204ENST00000453046 RHOJQ9H4E5 214 aa17.43■□□□□ 0.38
SQSTM1-204ENST00000453046 XKR8Q9H6D3 395 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms