RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 SIX3O95343 332 aaPredicted RBP4.01□□□□□ -1.77
VPS29-202ENST00000447578 IFNA2P01563 188 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 KLKB1P03952 638 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 GABRA5P31644 462 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 CRKLP46109 303 aaKnown RBP4.01□□□□□ -1.77
VPS29-202ENST00000447578 RFX2P48378 723 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 CLK1P49759 484 aaKnown RBP4.01□□□□□ -1.77
VPS29-202ENST00000447578 DSCR9P59020 149 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 KRTAP10-5P60370 271 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 ACSM1Q08AH1 577 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 HSPB3Q12988 150 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 MAD2L1Q13257 205 aaPredicted RBP4.01□□□□□ -1.77
VPS29-202ENST00000447578 ITPK1Q13572 414 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 STX1AQ16623 288 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 MEP1BQ16820 701 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 VWC2Q2TAL6 325 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 CCDC152Q4G0S7 254 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 ANKRD20A4Q4UJ75 823 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 ANKRD20A8PQ5CZ79 823 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 GLRA4Q5JXX5 417 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 ANKRD20A2Q5SQ80 823 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 WASHC2DQ5SRD0 308 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 ANKRD20A1Q5TYW2 823 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 GFI1BQ5VTD9 330 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 ANKRD20A3Q5VUR7 823 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 ZDHHC20Q5W0Z9 365 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 MOXD1Q6UVY6 613 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 C11orf57Q6ZUT1 292 aaPredicted RBP4.01□□□□□ -1.77
VPS29-202ENST00000447578 MON1BQ7L1V2 547 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 DET1Q7L5Y6 550 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 ZNF329Q86UD4 541 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 HOOK3Q86VS8 718 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 TMPRSS12Q86WS5 348 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 ZNF595Q8IYB9 648 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 SYCP3Q8IZU3 236 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 EXD1Q8NHP7 514 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 TBC1D16Q8TBP0 767 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 WDR20Q8TBZ3 569 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 TMEM163Q8TC26 289 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 ELP5Q8TE02 316 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 ROBO4Q8WZ75 1007 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 CORO2AQ92828 525 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 EXT2Q93063 718 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 ORAI1Q96D31 301 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 CABS1Q96KC9 395 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 MS4A10Q96PG2 267 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 INTS14Q96SY0 518 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 ACAT2Q9BWD1 397 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 NAPBQ9H115 298 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 ISCUQ9H1K1 167 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 SEBOXQ9HB31 216 aaPredicted RBP4.01□□□□□ -1.77
VPS29-202ENST00000447578 MMP25Q9NPA2 562 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 CD93Q9NPY3 652 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 EQTNQ9NQ60 294 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 PRMT7Q9NVM4 692 aaPredicted RBP4.01□□□□□ -1.77
VPS29-202ENST00000447578 TRMT1Q9NXH9 659 aaKnown RBP4.01□□□□□ -1.77
VPS29-202ENST00000447578 OR6C3Q9NZP0 311 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 PYCARDQ9ULZ3 195 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 MYO6Q9UM54 1294 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 NIP7Q9Y221 180 aaKnown RBP eCLIP4.01□□□□□ -1.77
VPS29-202ENST00000447578 LIPT1Q9Y234 373 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 PAM16Q9Y3D7 125 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 NHSL1Q5SYE7 1610 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 ATRNO75882 1429 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 STRCQ7RTU9 1775 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 SPEF2Q9C093 1822 aa4□□□□□ -1.77
VPS29-202ENST00000447578 NEDD4P46934 1319 aa4□□□□□ -1.77
VPS29-202ENST00000447578 COL14A1Q05707 1796 aaKnown RBP4□□□□□ -1.77
VPS29-202ENST00000447578 A0A087WWV3 80 aa4□□□□□ -1.77
VPS29-202ENST00000447578 A0A1B0GVL5 298 aa4□□□□□ -1.77
VPS29-202ENST00000447578 A0A1W2PPM1 405 aa4□□□□□ -1.77
VPS29-202ENST00000447578 LRRD1A4D1F6 860 aa4□□□□□ -1.77
VPS29-202ENST00000447578 CCDC69A6NI79 296 aa4□□□□□ -1.77
VPS29-202ENST00000447578 BECN2A8MW95 431 aa4□□□□□ -1.77
VPS29-202ENST00000447578 J3QR06 171 aa4□□□□□ -1.77
VPS29-202ENST00000447578 DDX39AO00148 427 aaKnown RBP4□□□□□ -1.77
VPS29-202ENST00000447578 IFIT3O14879 490 aaKnown RBP4□□□□□ -1.77
VPS29-202ENST00000447578 CLIC2O15247 247 aa4□□□□□ -1.77
VPS29-202ENST00000447578 SLC16A5O15375 505 aa4□□□□□ -1.77
VPS29-202ENST00000447578 SPINT2O43291 252 aa4□□□□□ -1.77
VPS29-202ENST00000447578 GRID2O43424 1007 aa4□□□□□ -1.77
VPS29-202ENST00000447578 ITM2AO43736 263 aa4□□□□□ -1.77
VPS29-202ENST00000447578 PRKAB2O43741 272 aa4□□□□□ -1.77
VPS29-202ENST00000447578 ZIC3O60481 467 aa4□□□□□ -1.77
VPS29-202ENST00000447578 KERAO60938 352 aa4□□□□□ -1.77
VPS29-202ENST00000447578 YEATS4O95619 227 aa4□□□□□ -1.77
VPS29-202ENST00000447578 CAVIN2O95810 425 aa4□□□□□ -1.77
VPS29-202ENST00000447578 SNRNP70P08621 437 aaKnown RBP4□□□□□ -1.77
VPS29-202ENST00000447578 SUPT20HL2P0C7V6 817 aa4□□□□□ -1.77
VPS29-202ENST00000447578 EEF1B2P24534 225 aaKnown RBP4□□□□□ -1.77
VPS29-202ENST00000447578 HNRNPH1P31943 449 aaKnown RBP4□□□□□ -1.77
VPS29-202ENST00000447578 STX2P32856 288 aa4□□□□□ -1.77
VPS29-202ENST00000447578 TDO2P48775 406 aa4□□□□□ -1.77
VPS29-202ENST00000447578 NDUFA8P51970 172 aa4□□□□□ -1.77
VPS29-202ENST00000447578 RPL36AP83881 106 aaKnown RBP4□□□□□ -1.77
VPS29-202ENST00000447578 EGR4Q05215 589 aa4□□□□□ -1.77
VPS29-202ENST00000447578 FOXM1Q08050 763 aa4□□□□□ -1.77
VPS29-202ENST00000447578 MZT1Q08AG7 82 aa4□□□□□ -1.77
VPS29-202ENST00000447578 TRIM29Q14134 588 aa4□□□□□ -1.77
VPS29-202ENST00000447578 RCN2Q14257 317 aa4□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms