RNA–Protein interactions for RNA: ENST00000442232.1

TTC28-203, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 2

Gene TTC28, Length 499 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-203ENST00000442232 CHRAC1Q9NRG0 131 aa11.32□□□□□ -0.6
TTC28-203ENST00000442232 P4HTMQ9NXG6 502 aa11.32□□□□□ -0.6
TTC28-203ENST00000442232 CDC23Q9UJX2 597 aa11.32□□□□□ -0.6
TTC28-203ENST00000442232 MAP4K5Q9Y4K4 846 aa11.32□□□□□ -0.6
TTC28-203ENST00000442232 SHANK1Q9Y566 2161 aa11.32□□□□□ -0.6
TTC28-203ENST00000442232 SPTBN1Q01082 2364 aaKnown RBP11.32□□□□□ -0.6
TTC28-203ENST00000442232 COL12A1Q99715 3063 aa11.32□□□□□ -0.6
TTC28-203ENST00000442232 PRRC2CQ9Y520 2896 aaKnown RBP11.31□□□□□ -0.6
TTC28-203ENST00000442232 H3BMH7 237 aa11.31□□□□□ -0.6
TTC28-203ENST00000442232 H3BMM5 538 aa11.31□□□□□ -0.6
TTC28-203ENST00000442232 DSCR3O14972 297 aa11.31□□□□□ -0.6
TTC28-203ENST00000442232 HCRTR1O43613 425 aa11.31□□□□□ -0.6
TTC28-203ENST00000442232 NRDCO43847 1150 aa11.31□□□□□ -0.6
TTC28-203ENST00000442232 SLCO2B1O94956 709 aa11.31□□□□□ -0.6
TTC28-203ENST00000442232 CCDC175P0C221 793 aa11.31□□□□□ -0.6
TTC28-203ENST00000442232 TPBGLP0DKB5 382 aa11.31□□□□□ -0.6
TTC28-203ENST00000442232 ERVK-10P10266 1014 aa11.31□□□□□ -0.6
TTC28-203ENST00000442232 PAMP19021 973 aa11.31□□□□□ -0.6
TTC28-203ENST00000442232 ITGAXP20702 1163 aa11.31□□□□□ -0.6
TTC28-203ENST00000442232 RPS3P23396 243 aaKnown RBP eCLIP11.31□□□□□ -0.6
TTC28-203ENST00000442232 ITGA3P26006 1051 aa11.31□□□□□ -0.6
TTC28-203ENST00000442232 CRADDP78560 199 aa11.31□□□□□ -0.6
TTC28-203ENST00000442232 SARNPP82979 210 aaKnown RBP11.31□□□□□ -0.6
TTC28-203ENST00000442232 GRM7Q14831 915 aa11.31□□□□□ -0.6
TTC28-203ENST00000442232 MYBPC3Q14896 1274 aa11.31□□□□□ -0.6
TTC28-203ENST00000442232 CNSTQ6PJW8 725 aa11.31□□□□□ -0.6
TTC28-203ENST00000442232 FIGLAQ6QHK4 219 aa11.31□□□□□ -0.6
TTC28-203ENST00000442232 FAM20CQ8IXL6 584 aa11.31□□□□□ -0.6
TTC28-203ENST00000442232 ZADH2Q8N4Q0 377 aa11.31□□□□□ -0.6
TTC28-203ENST00000442232 LINC01555Q8NAE3 123 aa11.31□□□□□ -0.6
TTC28-203ENST00000442232 WDR54Q9H977 334 aa11.31□□□□□ -0.6
TTC28-203ENST00000442232 MRM3Q9HC36 420 aaKnown RBP11.31□□□□□ -0.6
TTC28-203ENST00000442232 ATP13A2Q9NQ11 1180 aa11.31□□□□□ -0.6
TTC28-203ENST00000442232 HOMER3Q9NSC5 361 aa11.31□□□□□ -0.6
TTC28-203ENST00000442232 CUTCQ9NTM9 273 aa11.31□□□□□ -0.6
TTC28-203ENST00000442232 IL1RAPL1Q9NZN1 696 aa11.31□□□□□ -0.6
TTC28-203ENST00000442232 MARCH4Q9P2E8 410 aaPredicted RBP11.31□□□□□ -0.6
TTC28-203ENST00000442232 NXT1Q9UKK6 140 aaKnown RBP11.31□□□□□ -0.6
TTC28-203ENST00000442232 TTC7AQ9ULT0 858 aaPredicted RBP11.31□□□□□ -0.6
TTC28-203ENST00000442232 DRG1Q9Y295 367 aaKnown RBP11.31□□□□□ -0.6
TTC28-203ENST00000442232 KLHL20Q9Y2M5 609 aa11.31□□□□□ -0.6
TTC28-203ENST00000442232 SPTAN1Q13813 2472 aaKnown RBP11.31□□□□□ -0.6
TTC28-203ENST00000442232 USP9YO00507 2555 aaPredicted RBP11.3□□□□□ -0.6
TTC28-203ENST00000442232 USP9XQ93008 2570 aaPredicted RBP11.3□□□□□ -0.6
TTC28-203ENST00000442232 CYSRT1A8MQ03 144 aa11.3□□□□□ -0.6
TTC28-203ENST00000442232 E5RI56 91 aa11.3□□□□□ -0.6
TTC28-203ENST00000442232 AGPSO00116 658 aa11.3□□□□□ -0.6
TTC28-203ENST00000442232 FGGP02679 453 aa11.3□□□□□ -0.6
TTC28-203ENST00000442232 ALBP02768 609 aa11.3□□□□□ -0.6
TTC28-203ENST00000442232 CTSBP07858 339 aa11.3□□□□□ -0.6
TTC28-203ENST00000442232 ZSCAN5DPP0CG00 497 aa11.3□□□□□ -0.6
TTC28-203ENST00000442232 MGAT1P26572 445 aa11.3□□□□□ -0.6
TTC28-203ENST00000442232 NMBRP28336 390 aa11.3□□□□□ -0.6
TTC28-203ENST00000442232 BDKRB1P46663 353 aa11.3□□□□□ -0.6
TTC28-203ENST00000442232 CDK16Q00536 496 aa11.3□□□□□ -0.6
TTC28-203ENST00000442232 AIMP2Q13155 320 aaKnown RBP11.3□□□□□ -0.6
TTC28-203ENST00000442232 ELOAQ14241 798 aaKnown RBP11.3□□□□□ -0.6
TTC28-203ENST00000442232 RBBP7Q16576 425 aa11.3□□□□□ -0.6
TTC28-203ENST00000442232 FAM214AQ32MH5 1076 aa11.3□□□□□ -0.6
TTC28-203ENST00000442232 PRR30Q53SZ7 412 aaPredicted RBP11.3□□□□□ -0.6
TTC28-203ENST00000442232 MRPL14Q6P1L8 145 aaKnown RBP11.3□□□□□ -0.6
TTC28-203ENST00000442232 DRICH1Q6PGQ1 229 aaPredicted RBP11.3□□□□□ -0.6
TTC28-203ENST00000442232 PPP1R32Q7Z5V6 425 aa11.3□□□□□ -0.6
TTC28-203ENST00000442232 GAS2L3Q86XJ1 694 aa11.3□□□□□ -0.6
TTC28-203ENST00000442232 RBMXL3Q8N7X1 1067 aaKnown RBP11.3□□□□□ -0.6
TTC28-203ENST00000442232 LMNTD1Q8N9Z9 388 aa11.3□□□□□ -0.6
TTC28-203ENST00000442232 TRIM58Q8NG06 486 aa11.3□□□□□ -0.6
TTC28-203ENST00000442232 ZUFSPQ96AP4 578 aa11.3□□□□□ -0.6
TTC28-203ENST00000442232 NACC2Q96BF6 587 aa11.3□□□□□ -0.6
TTC28-203ENST00000442232 MIPEPQ99797 713 aa11.3□□□□□ -0.6
TTC28-203ENST00000442232 P2RY12Q9H244 342 aa11.3□□□□□ -0.6
TTC28-203ENST00000442232 LZTFL1Q9NQ48 299 aa11.3□□□□□ -0.6
TTC28-203ENST00000442232 FAM114A2Q9NRY5 505 aa11.3□□□□□ -0.6
TTC28-203ENST00000442232 TREX1Q9NSU2 369 aa11.3□□□□□ -0.6
TTC28-203ENST00000442232 SPATA7Q9P0W8 599 aa11.3□□□□□ -0.6
TTC28-203ENST00000442232 SAMD15Q9P1V8 674 aa11.3□□□□□ -0.6
TTC28-203ENST00000442232 TSR3Q9UJK0 312 aaKnown RBP11.3□□□□□ -0.6
TTC28-203ENST00000442232 B3GNT3Q9Y2A9 372 aa11.3□□□□□ -0.6
TTC28-203ENST00000442232 VPS9D1Q9Y2B5 631 aa11.3□□□□□ -0.6
TTC28-203ENST00000442232 TARM1B6A8C7 271 aa11.29□□□□□ -0.6
TTC28-203ENST00000442232 CEP104O60308 925 aa11.29□□□□□ -0.6
TTC28-203ENST00000442232 VPS26AO75436 327 aa11.29□□□□□ -0.6
TTC28-203ENST00000442232 VAPBO95292 243 aa11.29□□□□□ -0.6
TTC28-203ENST00000442232 C1orf105O95561 183 aa11.29□□□□□ -0.6
TTC28-203ENST00000442232 TPSB2P20231 275 aa11.29□□□□□ -0.6
TTC28-203ENST00000442232 MMP11P24347 488 aa11.29□□□□□ -0.6
TTC28-203ENST00000442232 CMPK1P30085 196 aa11.29□□□□□ -0.6
TTC28-203ENST00000442232 FMO4P31512 558 aa11.29□□□□□ -0.6
TTC28-203ENST00000442232 GRIA3P42263 894 aa11.29□□□□□ -0.6
TTC28-203ENST00000442232 VSX2P58304 361 aaPredicted RBP11.29□□□□□ -0.6
TTC28-203ENST00000442232 TPSAB1Q15661 275 aa11.29□□□□□ -0.6
TTC28-203ENST00000442232 TUBB8Q3ZCM7 444 aa11.29□□□□□ -0.6
TTC28-203ENST00000442232 FCRL6Q6DN72 434 aa11.29□□□□□ -0.6
TTC28-203ENST00000442232 CASC4Q6P4E1 433 aa11.29□□□□□ -0.6
TTC28-203ENST00000442232 LRRC8BQ6P9F7 803 aa11.29□□□□□ -0.6
TTC28-203ENST00000442232 OVCH1Q7RTY7 1134 aa11.29□□□□□ -0.6
TTC28-203ENST00000442232 Q8NA96 180 aa11.29□□□□□ -0.6
TTC28-203ENST00000442232 SSC4DQ8WTU2 575 aa11.29□□□□□ -0.6
TTC28-203ENST00000442232 TCF12Q99081 682 aa11.29□□□□□ -0.6
TTC28-203ENST00000442232 MENTQ9BUN1 341 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms