RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 TRMOQ9BU70 441 aa9.79□□□□□ -0.84
CD44-207ENST00000425428 CD244Q9BZW8 370 aa9.79□□□□□ -0.84
CD44-207ENST00000425428 ATG10Q9H0Y0 220 aa9.79□□□□□ -0.84
CD44-207ENST00000425428 SYNDIG1Q9H7V2 258 aa9.79□□□□□ -0.84
CD44-207ENST00000425428 MLXIPLQ9NP71 852 aa9.79□□□□□ -0.84
CD44-207ENST00000425428 PFDN4Q9NQP4 134 aa9.79□□□□□ -0.84
CD44-207ENST00000425428 DNAJC11Q9NVH1 559 aa9.79□□□□□ -0.84
CD44-207ENST00000425428 HRASLS2Q9NWW9 162 aa9.79□□□□□ -0.84
CD44-207ENST00000425428 PLAGL1Q9UM63 463 aa9.79□□□□□ -0.84
CD44-207ENST00000425428 OR6C74A6NCV1 312 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 K7EPI3 171 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 HGSO14964 777 aaPredicted RBP9.78□□□□□ -0.84
CD44-207ENST00000425428 DLX3O60479 287 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 PROS1P07225 676 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 CDK4P11802 303 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 CKMT1AP12532 417 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 GNAZP19086 355 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 CXCR2P25025 360 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 PKLRP30613 574 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 GGT5P36269 586 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 GMPRP36959 345 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 HSPA7P48741 367 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 ARL4DP49703 201 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 CCNG1P51959 295 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 ABATP80404 500 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 PCBP2Q15366 365 aaKnown RBP eCLIP9.78□□□□□ -0.84
CD44-207ENST00000425428 PDK4Q16654 411 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 EEF1AKMT2Q5JPI9 291 aaKnown RBP9.78□□□□□ -0.84
CD44-207ENST00000425428 CHCHD2P9Q5T1J5 151 aaPredicted RBP9.78□□□□□ -0.84
CD44-207ENST00000425428 PRAMEF13Q5VWM6 474 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 C17orf64Q86WR6 236 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 C10orf107Q8IVU9 208 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 HMGCLL1Q8TB92 370 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 ZNF480Q8WV37 535 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 CNDP1Q96KN2 507 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 GPRC5BQ9NZH0 403 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 PTBP2Q9UKA9 531 aaKnown RBP9.78□□□□□ -0.84
CD44-207ENST00000425428 EMCNQ9ULC0 261 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 RNF215Q9Y6U7 377 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 MUC6Q6W4X9 2439 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 UNC13CQ8NB66 2214 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 ARID1BQ8NFD5 2236 aaPredicted RBP9.78□□□□□ -0.84
CD44-207ENST00000425428 EME2A4GXA9 379 aaPredicted RBP9.78□□□□□ -0.84
CD44-207ENST00000425428 TMEM114B3SHH9 223 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 TRIM38O00635 465 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 KLK8O60259 260 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 HSPA4LO95757 839 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 OTCP00480 354 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 SERPINE1P05121 402 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 CHRM5P08912 532 aaPredicted RBP9.78□□□□□ -0.84
CD44-207ENST00000425428 SDHBP21912 280 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 IMPA1P29218 277 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 NAGLUP54802 743 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 TBPL1P62380 186 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 PHEXP78562 749 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 CDC16Q13042 620 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 STX3Q13277 289 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 GTF2H2Q13888 395 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 CHI3L2Q15782 390 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 CLPPQ16740 277 aaPredicted RBP9.78□□□□□ -0.84
CD44-207ENST00000425428 PTCHD3Q3KNS1 767 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 AMZ1Q400G9 498 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 PAGE2BQ5JRK9 111 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 STPG1Q5TH74 334 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 GTF2H2CQ6P1K8 395 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 EFL1Q7Z2Z2 1120 aaKnown RBP9.78□□□□□ -0.84
CD44-207ENST00000425428 KANSL1Q7Z3B3 1105 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 THOC6Q86W42 341 aaKnown RBP9.78□□□□□ -0.84
CD44-207ENST00000425428 C17orf82Q86X59 251 aaPredicted RBP9.78□□□□□ -0.84
CD44-207ENST00000425428 TEX9Q8N6V9 391 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 Q8N9G6 341 aaPredicted RBP9.78□□□□□ -0.84
CD44-207ENST00000425428 IFI44Q8TCB0 444 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 UBTD2Q8WUN7 234 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 CCT6BQ92526 530 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 NCSTNQ92542 709 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 DLG3Q92796 817 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 CCDC74AQ96AQ1 378 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 XKR8Q9H6D3 395 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 MANSC1Q9H8J5 431 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 MRPS30Q9NP92 439 aaKnown RBP9.78□□□□□ -0.84
CD44-207ENST00000425428 CIDEBQ9UHD4 219 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 ICKQ9UPZ9 632 aa9.78□□□□□ -0.84
CD44-207ENST00000425428 LOC105378220A0A1B0GUY1 285 aaPredicted RBP9.77□□□□□ -0.85
CD44-207ENST00000425428 E7ENX8 843 aa9.77□□□□□ -0.85
CD44-207ENST00000425428 G3V2L1 256 aa9.77□□□□□ -0.85
CD44-207ENST00000425428 CDX4O14627 284 aaPredicted RBP9.77□□□□□ -0.85
CD44-207ENST00000425428 PPM1DO15297 605 aa9.77□□□□□ -0.85
CD44-207ENST00000425428 TNFSF14O43557 240 aa9.77□□□□□ -0.85
CD44-207ENST00000425428 NPHS1O60500 1241 aa9.77□□□□□ -0.85
CD44-207ENST00000425428 GFRA3O60609 400 aa9.77□□□□□ -0.85
CD44-207ENST00000425428 CHEK2O96017 543 aa9.77□□□□□ -0.85
CD44-207ENST00000425428 GP1BAP07359 652 aa9.77□□□□□ -0.85
CD44-207ENST00000425428 TYRP1P17643 537 aa9.77□□□□□ -0.85
CD44-207ENST00000425428 POLR2CP19387 275 aaPredicted RBP9.77□□□□□ -0.85
CD44-207ENST00000425428 CDH3P22223 829 aa9.77□□□□□ -0.85
CD44-207ENST00000425428 ETV4P43268 484 aa9.77□□□□□ -0.85
CD44-207ENST00000425428 E2F1Q01094 437 aa9.77□□□□□ -0.85
CD44-207ENST00000425428 TAP2Q03519 686 aa9.77□□□□□ -0.85
CD44-207ENST00000425428 ILKQ13418 452 aa9.77□□□□□ -0.85
CD44-207ENST00000425428 LAPTM5Q13571 262 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms