RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 KRTCAP2Q8N6L1 136 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 PAF1Q8N7H5 531 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 GLB1L3Q8NCI6 653 aaPredicted RBP10.44□□□□□ -0.74
USP54-204ENST00000422491 ZNF675Q8TD23 568 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 SENP8Q96LD8 212 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 RIPOR3Q96MK2 946 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 SLC30A2Q9BRI3 323 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 ZBED2Q9BTP6 218 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 CLMPQ9H6B4 373 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 PLCXD1Q9NUJ7 323 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 CD274Q9NZQ7 290 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 CACNG4Q9UBN1 327 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 PCDHGB2Q9Y5G2 931 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 TIMM13Q9Y5L4 95 aaPredicted RBP10.44□□□□□ -0.74
USP54-204ENST00000422491 HS3ST4Q9Y661 456 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 PAPPA2Q9BXP8 1791 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 MEIOCA2RUB1 952 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 KRT87PA6NCN2 255 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 SEMG1P04279 462 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 YES1P07947 543 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 PIRTP0C851 137 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 ADORA3P0DMS8 318 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 MYCLP1P12525 358 aaPredicted RBP10.44□□□□□ -0.74
USP54-204ENST00000422491 RGS6P49758 472 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 CAMK2GQ13555 558 aaPredicted RBP10.44□□□□□ -0.74
USP54-204ENST00000422491 FBXO43Q4G163 708 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 UMODL1-AS1Q8N2C9 162 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 DNAJC22Q8N4W6 341 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 SPERTQ8NA61 448 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 PPTC7Q8NI37 304 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 BRSK1Q8TDC3 778 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 TTC9Q92623 222 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 CDKN2AIPNLQ96HQ2 116 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 HRASLS5Q96KN8 279 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 PPP3R2Q96LZ3 170 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 RAD9AQ99638 391 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 CHCHD6Q9BRQ6 235 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 DPY30Q9C005 99 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 ZNF408Q9H9D4 720 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 SAMD4AQ9UPU9 718 aaKnown RBP10.44□□□□□ -0.74
USP54-204ENST00000422491 PLXNB2O15031 1838 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 A0A0X1KG70 313 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 ZSCAN5BA6NJL1 495 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 CA12O43570 354 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 ZNF682O95780 498 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 HOXB9P17482 250 aaPredicted RBP10.43□□□□□ -0.74
USP54-204ENST00000422491 VLDLRP98155 873 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 UBXN11Q5T124 520 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 LRIF1Q5T3J3 769 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 MSANTD2Q6P1R3 559 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 ZNF551Q7Z340 670 aaPredicted RBP10.43□□□□□ -0.74
USP54-204ENST00000422491 GOLGA7Q7Z5G4 137 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 HORMAD1Q86X24 394 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 P3H2Q8IVL5 708 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 IQCF2Q8IXL9 164 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 ELMOD2Q8IZ81 293 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 ATG16L2Q8NAA4 619 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 EEF1AKMT1Q8WVE0 214 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 SLC7A6Q92536 515 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 OR52E6Q96RD3 313 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 SERHLQ9NQF3 203 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 RPRD1BQ9NQG5 326 aaKnown RBP10.43□□□□□ -0.74
USP54-204ENST00000422491 FNIP2Q9P278 1114 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 KIF17Q9P2E2 1029 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 PIN4Q9Y237 131 aaKnown RBP10.43□□□□□ -0.74
USP54-204ENST00000422491 CLCA1A8K7I4 914 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 hCG_2039718K7EN88 272 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 PTGESO14684 152 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 SLITRK5O94991 958 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 CCNDBP1O95273 360 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 FKBP9O95302 570 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 PTHP01270 115 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 FGF1P05230 155 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 DARSP14868 501 aaKnown RBP10.43□□□□□ -0.74
USP54-204ENST00000422491 IFNA8P32881 189 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 SOX6P35712 828 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 HNF4AP41235 474 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 RPS5P46782 204 aaKnown RBP10.43□□□□□ -0.74
USP54-204ENST00000422491 LHX1P48742 406 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 CRISP3P54108 245 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 GALNT3Q14435 633 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 C18orf21Q32NC0 220 aaPredicted RBP10.43□□□□□ -0.74
USP54-204ENST00000422491 OR8H2Q8N162 312 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 SIDT2Q8NBJ9 832 aaKnown RBP10.43□□□□□ -0.74
USP54-204ENST00000422491 FLCNQ8NFG4 579 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 GGHQ92820 318 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 MYDGFQ969H8 173 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 PSMG2Q969U7 264 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 FYTTD1Q96QD9 318 aaKnown RBP10.43□□□□□ -0.74
USP54-204ENST00000422491 GABARAPL3Q9BY60 117 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 TRIM39Q9HCM9 518 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 RANGRFQ9HD47 186 aaPredicted RBP10.43□□□□□ -0.74
USP54-204ENST00000422491 TXNRD2Q9NNW7 524 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 RIMKLBQ9ULI2 386 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 SAMHD1Q9Y3Z3 626 aaKnown RBP10.43□□□□□ -0.74
USP54-204ENST00000422491 KLK4Q9Y5K2 254 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 SLC12A8A0AV02 714 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 WNT9AO14904 365 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 KIAA0513O60268 411 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 ERN1O75460 977 aaKnown RBP10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms