RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 SLC32A1Q9H598 525 aa17.5■□□□□ 0.39
SDC1-203ENST00000403076 PARD6AQ9NPB6 346 aa17.5■□□□□ 0.39
SDC1-203ENST00000403076 DNAJC11Q9NVH1 559 aa17.5■□□□□ 0.39
SDC1-203ENST00000403076 SLC22A14Q9Y267 594 aa17.5■□□□□ 0.39
SDC1-203ENST00000403076 RNF215Q9Y6U7 377 aa17.5■□□□□ 0.39
SDC1-203ENST00000403076 GOLGA4Q13439 2230 aaKnown RBP17.49■□□□□ 0.39
SDC1-203ENST00000403076 CPED1A4D0V7 1026 aa17.49■□□□□ 0.39
SDC1-203ENST00000403076 K7EPI3 171 aa17.49■□□□□ 0.39
SDC1-203ENST00000403076 CDX4O14627 284 aaPredicted RBP17.49■□□□□ 0.39
SDC1-203ENST00000403076 FLRT2O43155 660 aa17.49■□□□□ 0.39
SDC1-203ENST00000403076 NUDT21O43809 227 aaKnown RBP17.49■□□□□ 0.39
SDC1-203ENST00000403076 RPS17P08708 135 aaKnown RBP17.49■□□□□ 0.39
SDC1-203ENST00000403076 ERGP11308 486 aa17.49■□□□□ 0.39
SDC1-203ENST00000403076 GLB1P16278 677 aa17.49■□□□□ 0.39
SDC1-203ENST00000403076 AMD1P17707 334 aa17.49■□□□□ 0.39
SDC1-203ENST00000403076 GRK2P25098 689 aa17.49■□□□□ 0.39
SDC1-203ENST00000403076 ALDH4A1P30038 563 aa17.49■□□□□ 0.39
SDC1-203ENST00000403076 GRK6P43250 576 aa17.49■□□□□ 0.39
SDC1-203ENST00000403076 SLC6A12P48065 614 aa17.49■□□□□ 0.39
SDC1-203ENST00000403076 TBPL1P62380 186 aa17.49■□□□□ 0.39
SDC1-203ENST00000403076 ZXDCQ2QGD7 858 aaPredicted RBP17.49■□□□□ 0.39
SDC1-203ENST00000403076 LRRC70Q7Z2Q7 622 aa17.49■□□□□ 0.39
SDC1-203ENST00000403076 THOC6Q86W42 341 aaKnown RBP17.49■□□□□ 0.39
SDC1-203ENST00000403076 FAM181AQ8N9Y4 354 aa17.49■□□□□ 0.39
SDC1-203ENST00000403076 OR6C4Q8NGE1 309 aa17.49■□□□□ 0.39
SDC1-203ENST00000403076 RAB3IL1Q8TBN0 382 aa17.49■□□□□ 0.39
SDC1-203ENST00000403076 ATP6V1E2Q96A05 226 aa17.49■□□□□ 0.39
SDC1-203ENST00000403076 MAGEB18Q96M61 343 aa17.49■□□□□ 0.39
SDC1-203ENST00000403076 UCK1Q9HA47 277 aa17.49■□□□□ 0.39
SDC1-203ENST00000403076 SEMA4BQ9NPR2 832 aaPredicted RBP17.49■□□□□ 0.39
SDC1-203ENST00000403076 RXFP3Q9NSD7 469 aa17.49■□□□□ 0.39
SDC1-203ENST00000403076 INTS7Q9NVH2 962 aaKnown RBP17.49■□□□□ 0.39
SDC1-203ENST00000403076 EVA1BQ9NVM1 165 aa17.49■□□□□ 0.39
SDC1-203ENST00000403076 OR6C2Q9NZP2 312 aa17.49■□□□□ 0.39
SDC1-203ENST00000403076 PCTPQ9UKL6 214 aa17.49■□□□□ 0.39
SDC1-203ENST00000403076 BTBD3Q9Y2F9 522 aa17.49■□□□□ 0.39
SDC1-203ENST00000403076 ASB1Q9Y576 335 aa17.49■□□□□ 0.39
SDC1-203ENST00000403076 USP34Q70CQ2 3546 aa17.49■□□□□ 0.39
SDC1-203ENST00000403076 OR6C74A6NCV1 312 aa17.48■□□□□ 0.39
SDC1-203ENST00000403076 LILRA5A6NI73 299 aa17.48■□□□□ 0.39
SDC1-203ENST00000403076 ISM1B1AKI9 464 aa17.48■□□□□ 0.39
SDC1-203ENST00000403076 PROB1E7EW31 1015 aa17.48■□□□□ 0.39
SDC1-203ENST00000403076 FOXD2O60548 495 aaPredicted RBP17.48■□□□□ 0.39
SDC1-203ENST00000403076 EPB42P16452 691 aa17.48■□□□□ 0.39
SDC1-203ENST00000403076 TSPAN8P19075 237 aa17.48■□□□□ 0.39
SDC1-203ENST00000403076 CCND1P24385 295 aa17.48■□□□□ 0.39
SDC1-203ENST00000403076 ARL1P40616 181 aaPredicted RBP17.48■□□□□ 0.39
SDC1-203ENST00000403076 PIK3CGP48736 1102 aa17.48■□□□□ 0.39
SDC1-203ENST00000403076 CDH13P55290 713 aa17.48■□□□□ 0.39
SDC1-203ENST00000403076 NAA20P61599 178 aa17.48■□□□□ 0.39
SDC1-203ENST00000403076 PRKAA1Q13131 559 aa17.48■□□□□ 0.39
SDC1-203ENST00000403076 SLC14A1Q13336 389 aa17.48■□□□□ 0.39
SDC1-203ENST00000403076 GTF2H2Q13888 395 aa17.48■□□□□ 0.39
SDC1-203ENST00000403076 RBBP7Q16576 425 aa17.48■□□□□ 0.39
SDC1-203ENST00000403076 ARMC6Q6NXE6 501 aa17.48■□□□□ 0.39
SDC1-203ENST00000403076 GTF2H2CQ6P1K8 395 aa17.48■□□□□ 0.39
SDC1-203ENST00000403076 METTL2BQ6P1Q9 378 aaKnown RBP17.48■□□□□ 0.39
SDC1-203ENST00000403076 KLHL35Q6PF15 583 aa17.48■□□□□ 0.39
SDC1-203ENST00000403076 LINC01555Q8NAE3 123 aa17.48■□□□□ 0.39
SDC1-203ENST00000403076 CNDP1Q96KN2 507 aa17.48■□□□□ 0.39
SDC1-203ENST00000403076 NSUN5Q96P11 429 aaKnown RBP17.48■□□□□ 0.39
SDC1-203ENST00000403076 ACAT2Q9BWD1 397 aa17.48■□□□□ 0.39
SDC1-203ENST00000403076 C1QTNF3Q9BXJ4 246 aa17.48■□□□□ 0.39
SDC1-203ENST00000403076 KCNK4Q9NYG8 393 aa17.48■□□□□ 0.39
SDC1-203ENST00000403076 ARID1BQ8NFD5 2236 aaPredicted RBP17.48■□□□□ 0.39
SDC1-203ENST00000403076 FAM221BA6H8Z2 402 aa17.47■□□□□ 0.39
SDC1-203ENST00000403076 C4orf47A7E2U8 309 aa17.47■□□□□ 0.39
SDC1-203ENST00000403076 E2F3O00716 465 aa17.47■□□□□ 0.39
SDC1-203ENST00000403076 NPHS1O60500 1241 aa17.47■□□□□ 0.39
SDC1-203ENST00000403076 UBXN7O94888 489 aa17.47■□□□□ 0.39
SDC1-203ENST00000403076 HSPA4LO95757 839 aa17.47■□□□□ 0.39
SDC1-203ENST00000403076 CHRM5P08912 532 aaPredicted RBP17.47■□□□□ 0.39
SDC1-203ENST00000403076 TYRP1P17643 537 aa17.47■□□□□ 0.39
SDC1-203ENST00000403076 POLR2CP19387 275 aaPredicted RBP17.47■□□□□ 0.39
SDC1-203ENST00000403076 DUSP3P51452 185 aaPredicted RBP17.47■□□□□ 0.39
SDC1-203ENST00000403076 CLCQ05315 142 aa17.47■□□□□ 0.39
SDC1-203ENST00000403076 BST1Q10588 318 aa17.47■□□□□ 0.39
SDC1-203ENST00000403076 PRAMEF13Q5VWM6 474 aa17.47■□□□□ 0.39
SDC1-203ENST00000403076 GOLGA7Q7Z5G4 137 aa17.47■□□□□ 0.39
SDC1-203ENST00000403076 OOSP2Q86WS3 158 aa17.47■□□□□ 0.39
SDC1-203ENST00000403076 LRRC56Q8IYG6 542 aaPredicted RBP17.47■□□□□ 0.39
SDC1-203ENST00000403076 Q8N9G6 341 aaPredicted RBP17.47■□□□□ 0.39
SDC1-203ENST00000403076 HMGCLL1Q8TB92 370 aa17.47■□□□□ 0.39
SDC1-203ENST00000403076 TRPC4APQ8TEL6 797 aa17.47■□□□□ 0.39
SDC1-203ENST00000403076 ZNF483Q8TF39 744 aaPredicted RBP17.47■□□□□ 0.39
SDC1-203ENST00000403076 MIPEPQ99797 713 aa17.47■□□□□ 0.39
SDC1-203ENST00000403076 SGPP1Q9BX95 441 aa17.47■□□□□ 0.39
SDC1-203ENST00000403076 CAPS2Q9BXY5 557 aa17.47■□□□□ 0.39
SDC1-203ENST00000403076 PCBD2Q9H0N5 130 aa17.47■□□□□ 0.39
SDC1-203ENST00000403076 HRASLS2Q9NWW9 162 aa17.47■□□□□ 0.39
SDC1-203ENST00000403076 TAC3Q9UHF0 121 aa17.47■□□□□ 0.39
SDC1-203ENST00000403076 DYRK1BQ9Y463 629 aa17.47■□□□□ 0.39
SDC1-203ENST00000403076 WDFY4Q6ZS81 3184 aa17.47■□□□□ 0.39
SDC1-203ENST00000403076 OTOGLQ3ZCN5 2332 aa17.47■□□□□ 0.39
SDC1-203ENST00000403076 PIPSLA2A3N6 862 aa17.47■□□□□ 0.39
SDC1-203ENST00000403076 GSAPA4D1B5 854 aa17.47■□□□□ 0.39
SDC1-203ENST00000403076 TMEM114B3SHH9 223 aa17.47■□□□□ 0.39
SDC1-203ENST00000403076 BTN3A3O00478 584 aa17.47■□□□□ 0.39
SDC1-203ENST00000403076 ZW10O43264 779 aa17.47■□□□□ 0.39
SDC1-203ENST00000403076 KATNA1O75449 491 aa17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms