RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 LIX1LQ8IVB5 337 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 PRELID2Q8N945 189 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 TRMT10AQ8TBZ6 339 aaKnown RBP7.05□□□□□ -1.28
UPF2-203ENST00000397053 ESAMQ96AP7 390 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 CMKLR1Q99788 373 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 RBM4BQ9BQ04 359 aaKnown RBP7.05□□□□□ -1.28
UPF2-203ENST00000397053 RBM4Q9BWF3 364 aaKnown RBP7.05□□□□□ -1.28
UPF2-203ENST00000397053 ZNF700Q9H0M5 742 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 UNC93B1Q9H1C4 597 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 GBA3Q9H227 469 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 ALG2Q9H553 416 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 PCDH10Q9P2E7 1040 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 ZNF282Q9UDV7 671 aaPredicted RBP7.05□□□□□ -1.28
UPF2-203ENST00000397053 RIPK3Q9Y572 518 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 SOX1O00570 391 aaPredicted RBP7.04□□□□□ -1.28
UPF2-203ENST00000397053 ALOX15BO15296 676 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 SCELO95171 688 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 TGFB1P01137 390 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 PRKCGP05129 697 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 HCKP08631 526 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 NR4A1P22736 598 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 DAOAP59103 153 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 MXD1Q05195 221 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 PRKCDQ05655 676 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 SEMA3AQ14563 771 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 DPY19L1Q2PZI1 675 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 CRB2Q5IJ48 1285 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 TMEM225Q6GV28 225 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 Q6ZVU0 165 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 FAM47BQ8NA70 645 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 WDR77Q9BQA1 342 aaPredicted RBP7.04□□□□□ -1.28
UPF2-203ENST00000397053 ZSCAN5AQ9BUG6 496 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 PDE7BQ9NP56 450 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 C11orf16Q9NQ32 467 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 FARSBQ9NSD9 589 aaKnown RBP7.04□□□□□ -1.28
UPF2-203ENST00000397053 THUMPD1Q9NXG2 353 aaKnown RBP7.04□□□□□ -1.28
UPF2-203ENST00000397053 AHCYL1O43865 530 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 UGT1A9O60656 530 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 ITGA10O75578 1167 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 ANGPTL1O95841 491 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 ALPIP09923 528 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 NUDT17P0C025 328 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 IRF2P14316 349 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 FOSL2P15408 326 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 UGT1A6P19224 532 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 UGT1A4P22310 534 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 UGT1A3P35503 534 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 MSX2P35548 267 aaPredicted RBP7.04□□□□□ -1.28
UPF2-203ENST00000397053 RAB8AP61006 207 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 MPP1Q00013 466 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 RFTN1Q14699 578 aaPredicted RBP7.04□□□□□ -1.28
UPF2-203ENST00000397053 PDK3Q15120 406 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 PCBP2Q15366 365 aaKnown RBP eCLIP7.04□□□□□ -1.28
UPF2-203ENST00000397053 TAF1AQ15573 450 aaPredicted RBP7.04□□□□□ -1.28
UPF2-203ENST00000397053 PGM2L1Q6PCE3 622 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 C15orf52Q6ZUT6 534 aaKnown RBP7.04□□□□□ -1.28
UPF2-203ENST00000397053 LRRC70Q7Z2Q7 622 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 ADGRD2Q7Z7M1 963 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 CMTM8Q8IZV2 173 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 OR2AP1Q8NGE2 309 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 POF1BQ8WVV4 589 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 PYCR2Q96C36 320 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 MECRQ9BV79 373 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 MED28Q9H204 178 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 OR10A4Q9H209 315 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 EBF3Q9H4W6 596 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 UGT1A7Q9HAW7 530 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 UGT1A10Q9HAW8 530 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 UGT1A8Q9HAW9 530 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 CLK4Q9HAZ1 481 aaKnown RBP7.04□□□□□ -1.28
UPF2-203ENST00000397053 SNTG1Q9NSN8 517 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 DZANK1Q9NVP4 752 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 HTR3EA5X5Y0 456 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 M0R129 80 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 FSCN2O14926 492 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 MMP20O60882 483 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 GPR37L1O60883 481 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 AOC2O75106 756 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 MTX2O75431 263 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 CPNE6O95741 557 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 PFKMP08237 780 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 AZGP1P25311 298 aaKnown RBP7.04□□□□□ -1.28
UPF2-203ENST00000397053 SLC10A7Q0GE19 358 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 CRTC2Q53ET0 693 aaPredicted RBP7.04□□□□□ -1.28
UPF2-203ENST00000397053 SPDYCQ5MJ68 293 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 CLEC6AQ6EIG7 209 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 GPAT4Q86UL3 456 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 SPPL2CQ8IUH8 684 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 LNX1Q8TBB1 728 aaPredicted RBP7.04□□□□□ -1.28
UPF2-203ENST00000397053 ZDHHC12Q96GR4 267 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 ADAD1Q96M93 576 aaKnown RBP7.04□□□□□ -1.28
UPF2-203ENST00000397053 KCTD15Q96SI1 283 aaPredicted RBP7.04□□□□□ -1.28
UPF2-203ENST00000397053 TBX5Q99593 518 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 IRF2BPLQ9H1B7 796 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 SLC6A15Q9H2J7 730 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 TIGARQ9NQ88 270 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 TAC3Q9UHF0 121 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 CYP8B1Q9UNU6 501 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 PLEKHA6Q9Y2H5 1048 aa7.04□□□□□ -1.28
UPF2-203ENST00000397053 ICE1Q9Y2F5 2266 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms