RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 A0A1W2PRB8 838 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 ZSCAN5BA6NJL1 495 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 GABRDO14764 452 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 MAT2AP31153 395 aaKnown RBP12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 RHBDL3P58872 404 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 DCDC1P59894 354 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 ARPC4P59998 168 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 MADCAM1Q13477 382 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 RAB39AQ14964 217 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 LRRC70Q7Z2Q7 622 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 ZNF565Q8N9K5 539 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 ZSCAN4Q8NAM6 433 aaPredicted RBP12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 SPATA22Q8NHS9 363 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 POLR2J3Q9H1A7 115 aaKnown RBP12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 ARHGEF4Q9NR80 690 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 TMLHEQ9NVH6 421 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 STXBP5LQ9Y2K9 1186 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 CPQQ9Y646 472 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 FAM149AA5PLN7 773 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 ZNF670-ZNF695F2Z2N8 137 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 TREHO43280 583 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 NOBOXO60393 691 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 ADGRE1Q14246 886 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 SPIN3Q5JUX0 258 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 VARS2Q5ST30 1063 aaKnown RBP12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 LRRC20Q8TCA0 184 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 NCSTNQ92542 709 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 CXorf21Q9HAI6 301 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 MAGEE1Q9HCI5 957 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 COMMD3Q9UBI1 195 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 LSM1O15116 133 aaKnown RBP12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 DUSP11O75319 330 aaKnown RBP12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 SNAPC5O75971 98 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 GADD45AP24522 165 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 LRRC32Q14392 662 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 GRHL2Q6ISB3 625 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 ALG3Q92685 438 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 MND1Q9BWT6 205 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 POLR2J2Q9GZM3 115 aaKnown RBP12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 ACSS2Q9NR19 701 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 ZNF446Q9NWS9 450 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 LGALS13Q9UHV8 139 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 A0A1W2PRQ8 180 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 PCP4L1A6NKN8 68 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 SCGB1D2O95969 90 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 ZNF806P0C7X5 589 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 SLC1A2P43004 574 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 SNTA1Q13424 505 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 LACTB2Q53H82 288 aaPredicted RBP12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 CARD16Q5EG05 197 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 CRB2Q5IJ48 1285 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 ARL14EPQ8N8R7 260 aaPredicted RBP12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 GRHL3Q8TE85 626 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 GEMIN6Q8WXD5 167 aaKnown RBP12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 INPP4AQ96PE3 977 aaPredicted RBP12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 BRD7Q9NPI1 651 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 GIN1Q9NXP7 522 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 NUP50Q9UKX7 468 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 SALL3Q9BXA9 1300 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 SLC2A2P11168 524 aaPredicted RBP12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 CDH1P12830 882 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 ECM1Q16610 540 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 ARSHQ5FYA8 562 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 CAMKVQ8NCB2 501 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 LENG8Q96PV6 779 aaPredicted RBP12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 HAPLN3Q96S86 360 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 SLC35A5Q9BS91 424 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 SEZ6LQ9BYH1 1024 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 HPF1Q9NWY4 346 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 FER1L4A9Z1Z3 1794 aa12.53□□□□□ -0.4
CCDC88C-204ENST00000389857 IFNA7P01567 189 aa12.52□□□□□ -0.4
CCDC88C-204ENST00000389857 HERVK_113P63132 956 aa12.52□□□□□ -0.4
CCDC88C-204ENST00000389857 HNRNPDQ14103 355 aaKnown RBP12.52□□□□□ -0.4
CCDC88C-204ENST00000389857 TDRPQ86YL5 185 aa12.52□□□□□ -0.4
CCDC88C-204ENST00000389857 PSMG2Q969U7 264 aa12.52□□□□□ -0.4
CCDC88C-204ENST00000389857 ERVK-6Q9BXR3 956 aa12.52□□□□□ -0.4
CCDC88C-204ENST00000389857 ZNF717Q9BY31 904 aaPredicted RBP12.52□□□□□ -0.4
CCDC88C-204ENST00000389857 GPR88Q9GZN0 384 aa12.52□□□□□ -0.4
CCDC88C-204ENST00000389857 ABCB8Q9NUT2 735 aa12.52□□□□□ -0.4
CCDC88C-204ENST00000389857 TSPAN4O14817 238 aa12.52□□□□□ -0.4
CCDC88C-204ENST00000389857 ADAMTS3O15072 1205 aa12.52□□□□□ -0.4
CCDC88C-204ENST00000389857 AP2S1P53680 142 aaPredicted RBP12.52□□□□□ -0.4
CCDC88C-204ENST00000389857 AMZ1Q400G9 498 aa12.52□□□□□ -0.4
CCDC88C-204ENST00000389857 TNFAIP8L2Q6P589 184 aaPredicted RBP12.52□□□□□ -0.4
CCDC88C-204ENST00000389857 OTOP2Q7RTS6 562 aa12.52□□□□□ -0.4
CCDC88C-204ENST00000389857 TAC4Q86UU9 113 aa12.52□□□□□ -0.4
CCDC88C-204ENST00000389857 PRSS58Q8IYP2 241 aa12.52□□□□□ -0.4
CCDC88C-204ENST00000389857 FAXDC2Q96IV6 333 aa12.52□□□□□ -0.4
CCDC88C-204ENST00000389857 OR2AG1Q9H205 316 aa12.52□□□□□ -0.4
CCDC88C-204ENST00000389857 RDH8Q9NYR8 311 aa12.52□□□□□ -0.4
CCDC88C-204ENST00000389857 ABCD2Q9UBJ2 740 aa12.52□□□□□ -0.4
CCDC88C-204ENST00000389857 GNB5O14775 395 aa12.52□□□□□ -0.4
CCDC88C-204ENST00000389857 SLC22A1O15245 554 aa12.52□□□□□ -0.4
CCDC88C-204ENST00000389857 MT-ND1P03886 318 aa12.52□□□□□ -0.4
CCDC88C-204ENST00000389857 DNAJA1P31689 397 aaKnown RBP12.52□□□□□ -0.4
CCDC88C-204ENST00000389857 GANABQ14697 944 aaKnown RBP12.52□□□□□ -0.4
CCDC88C-204ENST00000389857 UBXN2BQ14CS0 331 aa12.52□□□□□ -0.4
CCDC88C-204ENST00000389857 CDKL4Q5MAI5 379 aa12.52□□□□□ -0.4
CCDC88C-204ENST00000389857 PLA2G15Q8NCC3 412 aa12.52□□□□□ -0.4
CCDC88C-204ENST00000389857 TBX5Q99593 518 aa12.52□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms