RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 ALPPP05187 535 aa14.32□□□□□ -0.12
VPS9D1-201ENST00000389386 ZNF37AP17032 561 aaPredicted RBP14.32□□□□□ -0.12
VPS9D1-201ENST00000389386 MSH3P20585 1137 aa14.32□□□□□ -0.12
VPS9D1-201ENST00000389386 HOXA9P31269 272 aa14.32□□□□□ -0.12
VPS9D1-201ENST00000389386 RABGGTBP53611 331 aa14.32□□□□□ -0.12
VPS9D1-201ENST00000389386 BAK1Q16611 211 aa14.32□□□□□ -0.12
VPS9D1-201ENST00000389386 DEFB115Q30KQ5 88 aa14.32□□□□□ -0.12
VPS9D1-201ENST00000389386 CARD16Q5EG05 197 aa14.32□□□□□ -0.12
VPS9D1-201ENST00000389386 SREK1IP1Q8N9Q2 155 aaPredicted RBP14.32□□□□□ -0.12
VPS9D1-201ENST00000389386 LRRC20Q8TCA0 184 aa14.32□□□□□ -0.12
VPS9D1-201ENST00000389386 WNT8BQ93098 351 aa14.32□□□□□ -0.12
VPS9D1-201ENST00000389386 CAPNS2Q96L46 248 aa14.32□□□□□ -0.12
VPS9D1-201ENST00000389386 TSGA13Q96PP4 275 aa14.32□□□□□ -0.12
VPS9D1-201ENST00000389386 FCRL5Q96RD9 977 aa14.32□□□□□ -0.12
VPS9D1-201ENST00000389386 PRKD2Q9BZL6 878 aa14.32□□□□□ -0.12
VPS9D1-201ENST00000389386 IPPQ9Y573 584 aa14.32□□□□□ -0.12
VPS9D1-201ENST00000389386 MKI67P46013 3256 aaKnown RBP14.32□□□□□ -0.12
VPS9D1-201ENST00000389386 A0A0B4J293 547 aa14.31□□□□□ -0.12
VPS9D1-201ENST00000389386 ELOVL7A1L3X0 281 aa14.31□□□□□ -0.12
VPS9D1-201ENST00000389386 CYP7B1O75881 506 aa14.31□□□□□ -0.12
VPS9D1-201ENST00000389386 OR7A10O76100 309 aa14.31□□□□□ -0.12
VPS9D1-201ENST00000389386 PRDX3P30048 256 aaKnown RBP14.31□□□□□ -0.12
VPS9D1-201ENST00000389386 CREMQ03060 361 aa14.31□□□□□ -0.12
VPS9D1-201ENST00000389386 LDB1Q86U70 411 aaPredicted RBP14.31□□□□□ -0.12
VPS9D1-201ENST00000389386 TLK2Q86UE8 772 aa14.31□□□□□ -0.12
VPS9D1-201ENST00000389386 YIPF7Q8N8F6 280 aa14.31□□□□□ -0.12
VPS9D1-201ENST00000389386 RNF31Q96EP0 1072 aa14.31□□□□□ -0.12
VPS9D1-201ENST00000389386 THUMPD3Q9BV44 507 aaKnown RBP14.31□□□□□ -0.12
VPS9D1-201ENST00000389386 NUSAP1Q9BXS6 441 aaKnown RBP14.31□□□□□ -0.12
VPS9D1-201ENST00000389386 ATXN3LQ9H3M9 355 aa14.31□□□□□ -0.12
VPS9D1-201ENST00000389386 IKZF5Q9H5V7 419 aa14.31□□□□□ -0.12
VPS9D1-201ENST00000389386 ZNF304Q9HCX3 659 aa14.31□□□□□ -0.12
VPS9D1-201ENST00000389386 TIGARQ9NQ88 270 aa14.31□□□□□ -0.12
VPS9D1-201ENST00000389386 ASAH2Q9NR71 780 aa14.31□□□□□ -0.12
VPS9D1-201ENST00000389386 B3GNT2Q9NY97 397 aa14.31□□□□□ -0.12
VPS9D1-201ENST00000389386 GLTPQ9NZD2 209 aa14.31□□□□□ -0.12
VPS9D1-201ENST00000389386 VPS4AQ9UN37 437 aa14.31□□□□□ -0.12
VPS9D1-201ENST00000389386 GABRQQ9UN88 632 aa14.31□□□□□ -0.12
VPS9D1-201ENST00000389386 PCDHB5Q9Y5E4 795 aa14.31□□□□□ -0.12
VPS9D1-201ENST00000389386 LINC00854A0A1B0GVQ3 168 aa14.31□□□□□ -0.12
VPS9D1-201ENST00000389386 CA12O43570 354 aa14.31□□□□□ -0.12
VPS9D1-201ENST00000389386 PDGFAP04085 211 aa14.31□□□□□ -0.12
VPS9D1-201ENST00000389386 RETP07949 1114 aa14.31□□□□□ -0.12
VPS9D1-201ENST00000389386 TM4SF4P48230 202 aa14.31□□□□□ -0.12
VPS9D1-201ENST00000389386 ELP6Q0PNE2 266 aa14.31□□□□□ -0.12
VPS9D1-201ENST00000389386 HYAL2Q12891 473 aa14.31□□□□□ -0.12
VPS9D1-201ENST00000389386 FAM171BQ6P995 826 aa14.31□□□□□ -0.12
VPS9D1-201ENST00000389386 SLC27A1Q6PCB7 646 aa14.31□□□□□ -0.12
VPS9D1-201ENST00000389386 GPR149Q86SP6 731 aa14.31□□□□□ -0.12
VPS9D1-201ENST00000389386 CILP2Q8IUL8 1156 aa14.31□□□□□ -0.12
VPS9D1-201ENST00000389386 RDH10Q8IZV5 341 aa14.31□□□□□ -0.12
VPS9D1-201ENST00000389386 FNDC5Q8NAU1 212 aa14.31□□□□□ -0.12
VPS9D1-201ENST00000389386 OR4M2Q8NGB6 313 aa14.31□□□□□ -0.12
VPS9D1-201ENST00000389386 TMEM80Q96HE8 168 aa14.31□□□□□ -0.12
VPS9D1-201ENST00000389386 ZNF419Q96HQ0 510 aaPredicted RBP14.31□□□□□ -0.12
VPS9D1-201ENST00000389386 CELF6Q96J87 481 aaKnown RBP14.31□□□□□ -0.12
VPS9D1-201ENST00000389386 NECTIN4Q96NY8 510 aa14.31□□□□□ -0.12
VPS9D1-201ENST00000389386 ATOH8Q96SQ7 321 aa14.31□□□□□ -0.12
VPS9D1-201ENST00000389386 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP14.31□□□□□ -0.122e-7■■■□□ 15.5
VPS9D1-201ENST00000389386 ACTL8Q9H568 366 aa14.31□□□□□ -0.12
VPS9D1-201ENST00000389386 NIPAL2Q9H841 368 aa14.31□□□□□ -0.12
VPS9D1-201ENST00000389386 A0A075B6Q4 140 aa14.3□□□□□ -0.12
VPS9D1-201ENST00000389386 CCDC182A6NF36 153 aa14.3□□□□□ -0.12
VPS9D1-201ENST00000389386 MUSKO15146 869 aa14.3□□□□□ -0.12
VPS9D1-201ENST00000389386 SLC7A4O43246 635 aa14.3□□□□□ -0.12
VPS9D1-201ENST00000389386 S1PR4O95977 384 aa14.3□□□□□ -0.12
VPS9D1-201ENST00000389386 ZNF30P17039 623 aa14.3□□□□□ -0.12
VPS9D1-201ENST00000389386 MYL9P24844 172 aa14.3□□□□□ -0.12
VPS9D1-201ENST00000389386 SNRPD2P62316 118 aaKnown RBP14.3□□□□□ -0.12
VPS9D1-201ENST00000389386 CSNK2BP67870 215 aa14.3□□□□□ -0.12
VPS9D1-201ENST00000389386 SOX4Q06945 474 aaPredicted RBP14.3□□□□□ -0.12
VPS9D1-201ENST00000389386 ZMAT1Q5H9K5 638 aa14.3□□□□□ -0.12
VPS9D1-201ENST00000389386 ARMCX4Q5H9R4 360 aa14.3□□□□□ -0.12
VPS9D1-201ENST00000389386 XKRXQ6PP77 449 aa14.3□□□□□ -0.12
VPS9D1-201ENST00000389386 KDELC2Q7Z4H8 507 aa14.3□□□□□ -0.12
VPS9D1-201ENST00000389386 CDYL2Q8N8U2 506 aa14.3□□□□□ -0.12
VPS9D1-201ENST00000389386 GALNT6Q8NCL4 622 aa14.3□□□□□ -0.12
VPS9D1-201ENST00000389386 PMEPA1Q969W9 287 aa14.3□□□□□ -0.12
VPS9D1-201ENST00000389386 TBCDQ9BTW9 1192 aa14.3□□□□□ -0.12
VPS9D1-201ENST00000389386 GLOD4Q9HC38 313 aa14.3□□□□□ -0.12
VPS9D1-201ENST00000389386 TMEM39AQ9NV64 488 aa14.3□□□□□ -0.12
VPS9D1-201ENST00000389386 NIPSNAP3AQ9UFN0 247 aaPredicted RBP14.3□□□□□ -0.12
VPS9D1-201ENST00000389386 ZNF225Q9UK10 706 aa14.3□□□□□ -0.12
VPS9D1-201ENST00000389386 RWDD3Q9Y3V2 267 aa14.3□□□□□ -0.12
VPS9D1-201ENST00000389386 SNX8Q9Y5X2 465 aa14.3□□□□□ -0.12
VPS9D1-201ENST00000389386 KIAA0513O60268 411 aa14.3□□□□□ -0.12
VPS9D1-201ENST00000389386 PMPCBO75439 489 aa14.3□□□□□ -0.12
VPS9D1-201ENST00000389386 CREG1O75629 220 aa14.3□□□□□ -0.12
VPS9D1-201ENST00000389386 ACADMP11310 421 aa14.3□□□□□ -0.12
VPS9D1-201ENST00000389386 SLC19A1P41440 591 aa14.3□□□□□ -0.12
VPS9D1-201ENST00000389386 RGS6P49758 472 aa14.3□□□□□ -0.12
VPS9D1-201ENST00000389386 MAPK12P53778 367 aa14.3□□□□□ -0.12
VPS9D1-201ENST00000389386 ARPP19P56211 112 aa14.3□□□□□ -0.12
VPS9D1-201ENST00000389386 YWHAHQ04917 246 aaPredicted RBP14.3□□□□□ -0.12
VPS9D1-201ENST00000389386 CYP4F3Q08477 520 aa14.3□□□□□ -0.12
VPS9D1-201ENST00000389386 ADIGQ0VDE8 80 aa14.3□□□□□ -0.12
VPS9D1-201ENST00000389386 KYAT1Q16773 422 aa14.3□□□□□ -0.12
VPS9D1-201ENST00000389386 BTBD16Q32M84 506 aa14.3□□□□□ -0.12
VPS9D1-201ENST00000389386 KIAA1614Q5VZ46 1190 aa14.3□□□□□ -0.12
VPS9D1-201ENST00000389386 LETMD1Q6P1Q0 360 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms