RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 CDKN2CP42773 168 aa15.86■□□□□ 0.13
NKX3-1-201ENST00000380871 BCL2L1Q07817 233 aa15.86■□□□□ 0.13
NKX3-1-201ENST00000380871 CDK5R2Q13319 367 aa15.86■□□□□ 0.13
NKX3-1-201ENST00000380871 DNASE1L3Q13609 305 aa15.86■□□□□ 0.13
NKX3-1-201ENST00000380871 CES5AQ6NT32 575 aa15.86■□□□□ 0.13
NKX3-1-201ENST00000380871 CEP68Q76N32 757 aa15.86■□□□□ 0.13
NKX3-1-201ENST00000380871 CYP4Z1Q86W10 505 aa15.86■□□□□ 0.13
NKX3-1-201ENST00000380871 MICU2Q8IYU8 434 aa15.86■□□□□ 0.13
NKX3-1-201ENST00000380871 MCOLN3Q8TDD5 553 aa15.86■□□□□ 0.13
NKX3-1-201ENST00000380871 CLPBQ9H078 707 aa15.86■□□□□ 0.13
NKX3-1-201ENST00000380871 KAT8Q9H7Z6 458 aaKnown RBP15.86■□□□□ 0.13
NKX3-1-201ENST00000380871 POLE4Q9NR33 117 aa15.86■□□□□ 0.13
NKX3-1-201ENST00000380871 LATS2Q9NRM7 1088 aa15.86■□□□□ 0.13
NKX3-1-201ENST00000380871 DCAF13Q9NV06 445 aaKnown RBP15.86■□□□□ 0.13
NKX3-1-201ENST00000380871 DLGAP4Q9Y2H0 992 aa15.86■□□□□ 0.13
NKX3-1-201ENST00000380871 ARIH1Q9Y4X5 557 aaPredicted RBP15.86■□□□□ 0.13
NKX3-1-201ENST00000380871 DYTNA2CJ06 578 aa15.86■□□□□ 0.13
NKX3-1-201ENST00000380871 KRT87PA6NCN2 255 aa15.86■□□□□ 0.13
NKX3-1-201ENST00000380871 GRXCR2A6NFK2 248 aa15.86■□□□□ 0.13
NKX3-1-201ENST00000380871 ABLIM3O94929 683 aa15.86■□□□□ 0.13
NKX3-1-201ENST00000380871 CD70P32970 193 aa15.86■□□□□ 0.13
NKX3-1-201ENST00000380871 PTGER3P43115 390 aa15.86■□□□□ 0.13
NKX3-1-201ENST00000380871 MAGEA8P43361 318 aa15.86■□□□□ 0.13
NKX3-1-201ENST00000380871 GSTM4Q03013 218 aa15.86■□□□□ 0.13
NKX3-1-201ENST00000380871 CARD16Q5EG05 197 aa15.86■□□□□ 0.13
NKX3-1-201ENST00000380871 ZNF551Q7Z340 670 aaPredicted RBP15.86■□□□□ 0.13
NKX3-1-201ENST00000380871 EID3Q8N140 333 aa15.86■□□□□ 0.13
NKX3-1-201ENST00000380871 ZNF347Q96SE7 839 aa15.86■□□□□ 0.13
NKX3-1-201ENST00000380871 RIBC2Q9H4K1 309 aa15.86■□□□□ 0.13
NKX3-1-201ENST00000380871 PALMDQ9NP74 551 aa15.86■□□□□ 0.13
NKX3-1-201ENST00000380871 CRLS1Q9UJA2 301 aa15.86■□□□□ 0.13
NKX3-1-201ENST00000380871 ABCG2Q9UNQ0 655 aa15.86■□□□□ 0.13
NKX3-1-201ENST00000380871 ANGPTL3Q9Y5C1 460 aa15.86■□□□□ 0.13
NKX3-1-201ENST00000380871 DOCK6Q96HP0 2047 aa15.86■□□□□ 0.13
NKX3-1-201ENST00000380871 FRMPD3Q5JV73 1810 aa15.86■□□□□ 0.13
NKX3-1-201ENST00000380871 LOC730098B7Z3J9 87 aa15.86■□□□□ 0.13
NKX3-1-201ENST00000380871 CLDN25C9JDP6 229 aa15.86■□□□□ 0.13
NKX3-1-201ENST00000380871 UGT2B11O75310 529 aa15.86■□□□□ 0.13
NKX3-1-201ENST00000380871 S100BP04271 92 aaPredicted RBP15.86■□□□□ 0.13
NKX3-1-201ENST00000380871 CD6P30203 668 aa15.86■□□□□ 0.13
NKX3-1-201ENST00000380871 RUNDC3AQ59EK9 446 aa15.86■□□□□ 0.13
NKX3-1-201ENST00000380871 SLC39A5Q6ZMH5 540 aa15.86■□□□□ 0.13
NKX3-1-201ENST00000380871 ADAMTSL2Q86TH1 951 aa15.86■□□□□ 0.13
NKX3-1-201ENST00000380871 ARL10Q8N8L6 244 aa15.86■□□□□ 0.13
NKX3-1-201ENST00000380871 HJURPQ8NCD3 748 aaPredicted RBP15.86■□□□□ 0.13
NKX3-1-201ENST00000380871 MRPS31Q92665 395 aaKnown RBP15.86■□□□□ 0.13
NKX3-1-201ENST00000380871 UBE2FQ969M7 185 aa15.86■□□□□ 0.13
NKX3-1-201ENST00000380871 ASIC4Q96FT7 647 aa15.86■□□□□ 0.13
NKX3-1-201ENST00000380871 PPP3R2Q96LZ3 170 aa15.86■□□□□ 0.13
NKX3-1-201ENST00000380871 WWOXQ9NZC7 414 aa15.86■□□□□ 0.13
NKX3-1-201ENST00000380871 EIF3LQ9Y262 564 aaKnown RBP15.86■□□□□ 0.13
NKX3-1-201ENST00000380871 VPS9D1Q9Y2B5 631 aa15.86■□□□□ 0.13
NKX3-1-201ENST00000380871 PMF1-BGLAPU3KQ54 211 aa15.86■□□□□ 0.13
NKX3-1-201ENST00000380871 PRMT5O14744 637 aaPredicted RBP15.85■□□□□ 0.13
NKX3-1-201ENST00000380871 LRATO95237 230 aa15.85■□□□□ 0.13
NKX3-1-201ENST00000380871 SLC25A14O95258 325 aaPredicted RBP15.85■□□□□ 0.13
NKX3-1-201ENST00000380871 CLCN4P51793 760 aa15.85■□□□□ 0.13
NKX3-1-201ENST00000380871 ILF2Q12905 390 aaKnown RBP15.85■□□□□ 0.13
NKX3-1-201ENST00000380871 CPSF6Q16630 551 aaKnown RBP eCLIP15.85■□□□□ 0.13
NKX3-1-201ENST00000380871 C5orf22Q49AR2 442 aa15.85■□□□□ 0.13
NKX3-1-201ENST00000380871 B3GNT8Q7Z7M8 397 aa15.85■□□□□ 0.13
NKX3-1-201ENST00000380871 ZFYVE1Q9HBF4 777 aa15.85■□□□□ 0.13
NKX3-1-201ENST00000380871 SACM1LQ9NTJ5 587 aa15.85■□□□□ 0.13
NKX3-1-201ENST00000380871 USE1Q9NZ43 259 aa15.85■□□□□ 0.13
NKX3-1-201ENST00000380871 CD84Q9UIB8 345 aa15.85■□□□□ 0.13
NKX3-1-201ENST00000380871 C3orf18Q9UK00 162 aa15.85■□□□□ 0.13
NKX3-1-201ENST00000380871 ZNF99A8MXY4 864 aaPredicted RBP15.85■□□□□ 0.13
NKX3-1-201ENST00000380871 CCL16O15467 120 aa15.85■□□□□ 0.13
NKX3-1-201ENST00000380871 ANGPTL1O95841 491 aa15.85■□□□□ 0.13
NKX3-1-201ENST00000380871 TACR1P25103 407 aa15.85■□□□□ 0.13
NKX3-1-201ENST00000380871 HALP42357 657 aa15.85■□□□□ 0.13
NKX3-1-201ENST00000380871 NCS1P62166 190 aa15.85■□□□□ 0.13
NKX3-1-201ENST00000380871 PRR23BQ6ZRT6 265 aa15.85■□□□□ 0.13
NKX3-1-201ENST00000380871 GAREM2Q75VX8 874 aa15.85■□□□□ 0.13
NKX3-1-201ENST00000380871 CHST9Q7L1S5 443 aa15.85■□□□□ 0.13
NKX3-1-201ENST00000380871 GPR149Q86SP6 731 aa15.85■□□□□ 0.13
NKX3-1-201ENST00000380871 SVOPLQ8N434 492 aa15.85■□□□□ 0.13
NKX3-1-201ENST00000380871 ADAMTS19Q8TE59 1207 aa15.85■□□□□ 0.13
NKX3-1-201ENST00000380871 RPL3LQ92901 407 aaKnown RBP15.85■□□□□ 0.13
NKX3-1-201ENST00000380871 GLMNQ92990 594 aa15.85■□□□□ 0.13
NKX3-1-201ENST00000380871 CLMPQ9H6B4 373 aa15.85■□□□□ 0.13
NKX3-1-201ENST00000380871 AKIP1Q9NQ31 210 aa15.85■□□□□ 0.13
NKX3-1-201ENST00000380871 SPG21Q9NZD8 308 aa15.85■□□□□ 0.13
NKX3-1-201ENST00000380871 IL17CQ9P0M4 197 aa15.85■□□□□ 0.13
NKX3-1-201ENST00000380871 DNMT3BQ9UBC3 853 aaKnown RBP15.85■□□□□ 0.13
NKX3-1-201ENST00000380871 TRIM43BA6NCK2 446 aa15.85■□□□□ 0.13
NKX3-1-201ENST00000380871 UPK3BL1B0FP48 263 aa15.85■□□□□ 0.13
NKX3-1-201ENST00000380871 UPK3BL2E5RIL1 263 aa15.85■□□□□ 0.13
NKX3-1-201ENST00000380871 RAD51BO15315 384 aa15.85■□□□□ 0.13
NKX3-1-201ENST00000380871 ZNF682O95780 498 aa15.85■□□□□ 0.13
NKX3-1-201ENST00000380871 BCKDHAP12694 445 aa15.85■□□□□ 0.13
NKX3-1-201ENST00000380871 ITIH1P19827 911 aa15.85■□□□□ 0.13
NKX3-1-201ENST00000380871 NEK2P51955 445 aa15.85■□□□□ 0.13
NKX3-1-201ENST00000380871 GABARAPL2P60520 117 aa15.85■□□□□ 0.13
NKX3-1-201ENST00000380871 GTF2H3Q13889 308 aa15.85■□□□□ 0.13
NKX3-1-201ENST00000380871 MAPK11Q15759 364 aa15.85■□□□□ 0.13
NKX3-1-201ENST00000380871 CHRNA6Q15825 494 aa15.85■□□□□ 0.13
NKX3-1-201ENST00000380871 NCCRP1Q6ZVX7 275 aaPredicted RBP15.85■□□□□ 0.13
NKX3-1-201ENST00000380871 ANKRD13BQ86YJ7 626 aa15.85■□□□□ 0.13
NKX3-1-201ENST00000380871 RDH12Q96NR8 316 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms