RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 MYCLP1P12525 358 aaPredicted RBP13.02□□□□□ -0.33
CCDC3-202ENST00000378839 ELK4P28324 431 aa13.02□□□□□ -0.33
CCDC3-202ENST00000378839 WEE1P30291 646 aa13.02□□□□□ -0.33
CCDC3-202ENST00000378839 AKT1P31749 480 aa13.02□□□□□ -0.33
CCDC3-202ENST00000378839 CTSCP53634 463 aa13.02□□□□□ -0.33
CCDC3-202ENST00000378839 SMU1Q2TAY7 513 aa13.02□□□□□ -0.33
CCDC3-202ENST00000378839 METTL2BQ6P1Q9 378 aaKnown RBP13.02□□□□□ -0.33
CCDC3-202ENST00000378839 CHPFQ8IZ52 775 aa13.02□□□□□ -0.33
CCDC3-202ENST00000378839 CHCHD4Q8N4Q1 142 aa13.02□□□□□ -0.33
CCDC3-202ENST00000378839 DHRSXQ8N5I4 330 aa13.02□□□□□ -0.33
CCDC3-202ENST00000378839 LMNTD1Q8N9Z9 388 aa13.02□□□□□ -0.33
CCDC3-202ENST00000378839 L3MBTL4Q8NA19 623 aa13.02□□□□□ -0.33
CCDC3-202ENST00000378839 NPLQ9BXD5 320 aaPredicted RBP13.02□□□□□ -0.33
CCDC3-202ENST00000378839 KLHL42Q9P2K6 505 aa13.02□□□□□ -0.33
CCDC3-202ENST00000378839 SLC25A13Q9UJS0 675 aa13.02□□□□□ -0.33
CCDC3-202ENST00000378839 A0A1W2PQ67 120 aa13.01□□□□□ -0.33
CCDC3-202ENST00000378839 WASH3PC4AMC7 463 aa13.01□□□□□ -0.33
CCDC3-202ENST00000378839 ASLP04424 464 aa13.01□□□□□ -0.33
CCDC3-202ENST00000378839 PPM1AP35813 382 aa13.01□□□□□ -0.33
CCDC3-202ENST00000378839 ARSFP54793 590 aa13.01□□□□□ -0.33
CCDC3-202ENST00000378839 CLDN8P56748 225 aa13.01□□□□□ -0.33
CCDC3-202ENST00000378839 TUBA4AP68366 448 aa13.01□□□□□ -0.33
CCDC3-202ENST00000378839 PON2Q15165 354 aa13.01□□□□□ -0.33
CCDC3-202ENST00000378839 PLPP4Q5VZY2 271 aa13.01□□□□□ -0.33
CCDC3-202ENST00000378839 LRRC70Q7Z2Q7 622 aa13.01□□□□□ -0.33
CCDC3-202ENST00000378839 NECAB2Q7Z6G3 386 aa13.01□□□□□ -0.33
CCDC3-202ENST00000378839 OSCP1Q8WVF1 389 aa13.01□□□□□ -0.33
CCDC3-202ENST00000378839 ZBTB18Q99592 522 aa13.01□□□□□ -0.33
CCDC3-202ENST00000378839 HAUS8Q9BT25 410 aa13.01□□□□□ -0.33
CCDC3-202ENST00000378839 RIOK2Q9BVS4 552 aaKnown RBP13.01□□□□□ -0.33
CCDC3-202ENST00000378839 CEP44Q9C0F1 390 aa13.01□□□□□ -0.33
CCDC3-202ENST00000378839 SPHK2Q9NRA0 654 aa13.01□□□□□ -0.33
CCDC3-202ENST00000378839 CXXC1Q9P0U4 656 aaPredicted RBP13.01□□□□□ -0.33
CCDC3-202ENST00000378839 LIMD1Q9UGP4 676 aa13.01□□□□□ -0.33
CCDC3-202ENST00000378839 ERVW-1Q9UQF0 538 aa13.01□□□□□ -0.33
CCDC3-202ENST00000378839 ITM2BQ9Y287 266 aa13.01□□□□□ -0.33
CCDC3-202ENST00000378839 PLXNA2O75051 1894 aa13.01□□□□□ -0.33
CCDC3-202ENST00000378839 CXCR6O00574 342 aa13.01□□□□□ -0.33
CCDC3-202ENST00000378839 NOBOXO60393 691 aa13.01□□□□□ -0.33
CCDC3-202ENST00000378839 PREPP48147 710 aa13.01□□□□□ -0.33
CCDC3-202ENST00000378839 PMS2P3Q13401 168 aa13.01□□□□□ -0.33
CCDC3-202ENST00000378839 CBX2Q14781 532 aaPredicted RBP13.01□□□□□ -0.33
CCDC3-202ENST00000378839 PATL1Q86TB9 770 aaKnown RBP13.01□□□□□ -0.33
CCDC3-202ENST00000378839 PAWRQ96IZ0 340 aaKnown RBP13.01□□□□□ -0.33
CCDC3-202ENST00000378839 MBOAT4Q96T53 435 aa13.01□□□□□ -0.33
CCDC3-202ENST00000378839 TDP1Q9NUW8 608 aa13.01□□□□□ -0.33
CCDC3-202ENST00000378839 TDRKHQ9Y2W6 561 aaKnown RBP13.01□□□□□ -0.33
CCDC3-202ENST00000378839 RANBP2P49792 3224 aaKnown RBP13□□□□□ -0.33
CCDC3-202ENST00000378839 C7P10643 843 aa13□□□□□ -0.33
CCDC3-202ENST00000378839 PIGAP37287 484 aa13□□□□□ -0.33
CCDC3-202ENST00000378839 MAD2L1Q13257 205 aaPredicted RBP13□□□□□ -0.33
CCDC3-202ENST00000378839 MYBPC3Q14896 1274 aa13□□□□□ -0.33
CCDC3-202ENST00000378839 GGTA1PQ4G0N0 100 aa13□□□□□ -0.33
CCDC3-202ENST00000378839 LRIF1Q5T3J3 769 aa13□□□□□ -0.33
CCDC3-202ENST00000378839 CCDC149Q6ZUS6 474 aa13□□□□□ -0.33
CCDC3-202ENST00000378839 GLB1L3Q8NCI6 653 aaPredicted RBP13□□□□□ -0.33
CCDC3-202ENST00000378839 ADAMTS16Q8TE57 1224 aa13□□□□□ -0.33
CCDC3-202ENST00000378839 ELMO1Q92556 727 aa13□□□□□ -0.33
CCDC3-202ENST00000378839 APOLD1Q96LR9 279 aa13□□□□□ -0.33
CCDC3-202ENST00000378839 OR4K3Q96R72 315 aa13□□□□□ -0.33
CCDC3-202ENST00000378839 BDH2Q9BUT1 245 aa13□□□□□ -0.33
CCDC3-202ENST00000378839 VCX3AQ9NNX9 186 aa13□□□□□ -0.33
CCDC3-202ENST00000378839 VNN3Q9NY84 501 aa13□□□□□ -0.33
CCDC3-202ENST00000378839 GULP1Q9UBP9 304 aa13□□□□□ -0.33
CCDC3-202ENST00000378839 RSL24D1Q9UHA3 163 aaKnown RBP13□□□□□ -0.33
CCDC3-202ENST00000378839 FBXO10Q9UK96 956 aa13□□□□□ -0.33
CCDC3-202ENST00000378839 CDC14AQ9UNH5 594 aa13□□□□□ -0.33
CCDC3-202ENST00000378839 INVSQ9Y283 1065 aa13□□□□□ -0.33
CCDC3-202ENST00000378839 ELOVL7A1L3X0 281 aa13□□□□□ -0.33
CCDC3-202ENST00000378839 ARHGEF33A8MVX0 844 aa13□□□□□ -0.33
CCDC3-202ENST00000378839 TULP3O75386 442 aa13□□□□□ -0.33
CCDC3-202ENST00000378839 ETHE1O95571 254 aa13□□□□□ -0.33
CCDC3-202ENST00000378839 KRT6AP02538 564 aa13□□□□□ -0.33
CCDC3-202ENST00000378839 KRT6BP04259 564 aa13□□□□□ -0.33
CCDC3-202ENST00000378839 ADH1AP07327 375 aa13□□□□□ -0.33
CCDC3-202ENST00000378839 C8GP07360 202 aa13□□□□□ -0.33
CCDC3-202ENST00000378839 HNRNPCP07910 306 aaKnown RBP eCLIP13□□□□□ -0.33
CCDC3-202ENST00000378839 RHOP08100 348 aa13□□□□□ -0.33
CCDC3-202ENST00000378839 AMD1P17707 334 aa13□□□□□ -0.33
CCDC3-202ENST00000378839 PRKACGP22612 351 aa13□□□□□ -0.33
CCDC3-202ENST00000378839 KRT6CP48668 564 aa13□□□□□ -0.33
CCDC3-202ENST00000378839 ABRQ12979 859 aa13□□□□□ -0.33
CCDC3-202ENST00000378839 ZNF77Q15935 545 aa13□□□□□ -0.33
CCDC3-202ENST00000378839 ADRM1Q16186 407 aa13□□□□□ -0.33
CCDC3-202ENST00000378839 PGS1Q32NB8 556 aa13□□□□□ -0.33
CCDC3-202ENST00000378839 HENMT1Q5T8I9 393 aaKnown RBP13□□□□□ -0.33
CCDC3-202ENST00000378839 OR4F3Q6IEY1 312 aa13□□□□□ -0.33
CCDC3-202ENST00000378839 KIAA0907Q7Z7F0 614 aaPredicted RBP13□□□□□ -0.33
CCDC3-202ENST00000378839 GPR65Q8IYL9 337 aa13□□□□□ -0.33
CCDC3-202ENST00000378839 RASGEF1AQ8N9B8 481 aa13□□□□□ -0.33
CCDC3-202ENST00000378839 ST13P5Q8NFI4 369 aaPredicted RBP13□□□□□ -0.33
CCDC3-202ENST00000378839 AMBRA1Q9C0C7 1298 aa13□□□□□ -0.33
CCDC3-202ENST00000378839 FAM83DQ9H4H8 585 aa13□□□□□ -0.33
CCDC3-202ENST00000378839 ELOVL6Q9H5J4 265 aa13□□□□□ -0.33
CCDC3-202ENST00000378839 BTBD3Q9Y2F9 522 aa13□□□□□ -0.33
CCDC3-202ENST00000378839 NRIP1P48552 1158 aa13□□□□□ -0.33
CCDC3-202ENST00000378839 CDK9P50750 372 aaKnown RBP13□□□□□ -0.33
CCDC3-202ENST00000378839 EPHA5P54756 1037 aa13□□□□□ -0.33
CCDC3-202ENST00000378839 C16orf72Q14CZ0 275 aa13□□□□□ -0.33
CCDC3-202ENST00000378839 CDKL4Q5MAI5 379 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms