RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 BLOC1S3Q6QNY0 202 aa12.99□□□□□ -0.33
HMGB1-202ENST00000339872 CYP20A1Q6UW02 462 aa12.99□□□□□ -0.33
HMGB1-202ENST00000339872 LMNTD1Q8N9Z9 388 aa12.99□□□□□ -0.33
HMGB1-202ENST00000339872 PHC3Q8NDX5 983 aa12.99□□□□□ -0.33
HMGB1-202ENST00000339872 MAGEC3Q8TD91 643 aa12.99□□□□□ -0.33
HMGB1-202ENST00000339872 TFGQ92734 400 aaPredicted RBP12.99□□□□□ -0.33
HMGB1-202ENST00000339872 LRTM1Q9HBL6 345 aa12.99□□□□□ -0.33
HMGB1-202ENST00000339872 MRPL40Q9NQ50 206 aaKnown RBP12.99□□□□□ -0.33
HMGB1-202ENST00000339872 ZIM2Q9NZV7 527 aa12.99□□□□□ -0.33
HMGB1-202ENST00000339872 NKX1-2Q9UD57 310 aaPredicted RBP12.99□□□□□ -0.33
HMGB1-202ENST00000339872 L3MBTL1Q9Y468 752 aa12.99□□□□□ -0.33
HMGB1-202ENST00000339872 CFAP20Q9Y6A4 193 aaKnown RBP12.99□□□□□ -0.33
HMGB1-202ENST00000339872 IFRD1O00458 451 aaPredicted RBP12.99□□□□□ -0.33
HMGB1-202ENST00000339872 LATO43561 262 aa12.99□□□□□ -0.33
HMGB1-202ENST00000339872 UGDHO60701 494 aa12.99□□□□□ -0.33
HMGB1-202ENST00000339872 KRT36O76013 467 aa12.99□□□□□ -0.33
HMGB1-202ENST00000339872 CEACAM5P06731 702 aa12.99□□□□□ -0.33
HMGB1-202ENST00000339872 SLC35G4P0C7Q5 338 aa12.99□□□□□ -0.33
HMGB1-202ENST00000339872 CD22P20273 847 aa12.99□□□□□ -0.33
HMGB1-202ENST00000339872 PSME3P61289 254 aa12.99□□□□□ -0.33
HMGB1-202ENST00000339872 MAD2L1Q13257 205 aaPredicted RBP12.99□□□□□ -0.33
HMGB1-202ENST00000339872 DOC2AQ14183 400 aa12.99□□□□□ -0.33
HMGB1-202ENST00000339872 RCAN2Q14206 197 aa12.99□□□□□ -0.33
HMGB1-202ENST00000339872 FRG2Q64ET8 278 aa12.99□□□□□ -0.33
HMGB1-202ENST00000339872 CAPN13Q6MZZ7 669 aaPredicted RBP12.99□□□□□ -0.33
HMGB1-202ENST00000339872 RETREG3Q86VR2 466 aa12.99□□□□□ -0.33
HMGB1-202ENST00000339872 GALNT13Q8IUC8 556 aa12.99□□□□□ -0.33
HMGB1-202ENST00000339872 DCUN1D3Q8IWE4 304 aa12.99□□□□□ -0.33
HMGB1-202ENST00000339872 PCYOX1LQ8NBM8 494 aa12.99□□□□□ -0.33
HMGB1-202ENST00000339872 SPDL1Q96EA4 605 aa12.99□□□□□ -0.33
HMGB1-202ENST00000339872 FRG2BQ96QU4 278 aa12.99□□□□□ -0.33
HMGB1-202ENST00000339872 UHRF1Q96T88 793 aaPredicted RBP12.99□□□□□ -0.33
HMGB1-202ENST00000339872 BTBD1Q9H0C5 482 aa12.99□□□□□ -0.33
HMGB1-202ENST00000339872 ITM2CQ9NQX7 267 aa12.99□□□□□ -0.33
HMGB1-202ENST00000339872 PLAGL1Q9UM63 463 aa12.99□□□□□ -0.33
HMGB1-202ENST00000339872 POMPQ9Y244 141 aa12.99□□□□□ -0.33
HMGB1-202ENST00000339872 SLC17A4Q9Y2C5 497 aa12.99□□□□□ -0.33
HMGB1-202ENST00000339872 TDRKHQ9Y2W6 561 aaKnown RBP12.99□□□□□ -0.33
HMGB1-202ENST00000339872 NDUFAF1Q9Y375 327 aa12.99□□□□□ -0.33
HMGB1-202ENST00000339872 PCDHGA7Q9Y5G6 932 aa12.99□□□□□ -0.33
HMGB1-202ENST00000339872 PSMG1O95456 288 aa12.98□□□□□ -0.33
HMGB1-202ENST00000339872 LMNAP02545 664 aaKnown RBP12.98□□□□□ -0.33
HMGB1-202ENST00000339872 C7P10643 843 aa12.98□□□□□ -0.33
HMGB1-202ENST00000339872 ZFP36L2P47974 494 aaKnown RBP12.98□□□□□ -0.33
HMGB1-202ENST00000339872 CLCNKAP51800 687 aa12.98□□□□□ -0.33
HMGB1-202ENST00000339872 POLR2JP52435 117 aaKnown RBP12.98□□□□□ -0.33
HMGB1-202ENST00000339872 THOP1P52888 689 aa12.98□□□□□ -0.33
HMGB1-202ENST00000339872 PNLIPRP1P54315 467 aa12.98□□□□□ -0.33
HMGB1-202ENST00000339872 CLDN2P57739 230 aa12.98□□□□□ -0.33
HMGB1-202ENST00000339872 MLF2Q15773 248 aaPredicted RBP12.98□□□□□ -0.33
HMGB1-202ENST00000339872 CCDC6Q16204 474 aa12.98□□□□□ -0.33
HMGB1-202ENST00000339872 PIGGQ5H8A4 983 aa12.98□□□□□ -0.33
HMGB1-202ENST00000339872 PGBD3Q8N328 593 aa12.98□□□□□ -0.33
HMGB1-202ENST00000339872 RNF148Q8N7C7 305 aa12.98□□□□□ -0.33
HMGB1-202ENST00000339872 PROKR1Q8TCW9 393 aa12.98□□□□□ -0.33
HMGB1-202ENST00000339872 RAD51AP1Q96B01 352 aa12.98□□□□□ -0.33
HMGB1-202ENST00000339872 DCLRE1BQ9H816 532 aa12.98□□□□□ -0.33
HMGB1-202ENST00000339872 C1orf109Q9NX04 203 aa12.98□□□□□ -0.33
HMGB1-202ENST00000339872 ADA2Q9NZK5 511 aa12.98□□□□□ -0.33
HMGB1-202ENST00000339872 KCNK6Q9Y257 313 aa12.98□□□□□ -0.33
HMGB1-202ENST00000339872 EIF3LQ9Y262 564 aaKnown RBP12.98□□□□□ -0.33
HMGB1-202ENST00000339872 KCNE2Q9Y6J6 123 aa12.98□□□□□ -0.33
HMGB1-202ENST00000339872 KANSL1LA0AUZ9 987 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 KLHL33A6NCF5 533 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 POM121BA6NF01 834 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 E7ENX8 843 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 RPN2P04844 631 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 GNAZP19086 355 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 TFF2Q03403 129 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 TAP2Q03519 686 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 PRKG2Q13237 762 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 RCN1Q15293 331 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 SMU1Q2TAY7 513 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 GRHL2Q6ISB3 625 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 PTCRAQ6ISU1 281 aaPredicted RBP12.97□□□□□ -0.33
HMGB1-202ENST00000339872 SUSD1Q6UWL2 747 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 Q7L0L9 218 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 TMPRSS11BQ86T26 416 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 ZFAND4Q86XD8 727 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 OR2T34Q8NGX1 318 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 ASB12Q8WXK4 309 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 NEIL2Q969S2 332 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 VPS33AQ96AX1 596 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 ROPN1LQ96C74 230 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 IL17FQ96PD4 163 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 SLC39A3Q9BRY0 314 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 TIMM29Q9BSF4 260 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 RMI1Q9H9A7 625 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 IL1RL2Q9HB29 575 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 CROTQ9UKG9 612 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 CA14Q9ULX7 337 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 SUFUQ9UMX1 484 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 CA5BQ9Y2D0 317 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 GPSM3Q9Y4H4 160 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 FAM234BA2RU67 622 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 CCDC154A6NI56 674 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 LRRC72A6NJI9 287 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 KELP23276 732 aa12.97□□□□□ -0.33
HMGB1-202ENST00000339872 VARSP26640 1264 aaKnown RBP12.97□□□□□ -0.33
HMGB1-202ENST00000339872 IL12AP29459 219 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms