RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 GALNT13Q8IUC8 556 aa13.12□□□□□ -0.31
SKA3-202ENST00000314759 PSD4Q8NDX1 1056 aa13.12□□□□□ -0.31
SKA3-202ENST00000314759 INPP5KQ9BT40 448 aa13.12□□□□□ -0.31
SKA3-202ENST00000314759 CPNE5Q9HCH3 593 aa13.12□□□□□ -0.31
SKA3-202ENST00000314759 AP3M1Q9Y2T2 418 aa13.12□□□□□ -0.31
SKA3-202ENST00000314759 PCDHB5Q9Y5E4 795 aa13.12□□□□□ -0.31
SKA3-202ENST00000314759 ZFP37Q9Y6Q3 630 aaPredicted RBP13.12□□□□□ -0.31
SKA3-202ENST00000314759 GLUD1P00367 558 aa13.12□□□□□ -0.31
SKA3-202ENST00000314759 BCKDHAP12694 445 aa13.12□□□□□ -0.31
SKA3-202ENST00000314759 GTF2E2P29084 291 aaKnown RBP13.12□□□□□ -0.31
SKA3-202ENST00000314759 COPZ1P61923 177 aa13.12□□□□□ -0.31
SKA3-202ENST00000314759 RPS24P62847 133 aaKnown RBP13.12□□□□□ -0.31
SKA3-202ENST00000314759 GTF2H3Q13889 308 aa13.12□□□□□ -0.31
SKA3-202ENST00000314759 NDUFA5Q16718 116 aa13.12□□□□□ -0.31
SKA3-202ENST00000314759 USP39Q53GS9 565 aaKnown RBP13.12□□□□□ -0.31
SKA3-202ENST00000314759 GNASQ5JWF2 1037 aa13.12□□□□□ -0.31
SKA3-202ENST00000314759 ZNF551Q7Z340 670 aaPredicted RBP13.12□□□□□ -0.31
SKA3-202ENST00000314759 CARNMT1Q8N4J0 409 aa13.12□□□□□ -0.31
SKA3-202ENST00000314759 CHCHD4Q8N4Q1 142 aa13.12□□□□□ -0.31
SKA3-202ENST00000314759 UBE2FQ969M7 185 aa13.12□□□□□ -0.31
SKA3-202ENST00000314759 MYOCQ99972 504 aa13.12□□□□□ -0.31
SKA3-202ENST00000314759 CIPCQ9C0C6 399 aa13.12□□□□□ -0.31
SKA3-202ENST00000314759 ANGPTL3Q9Y5C1 460 aa13.12□□□□□ -0.31
SKA3-202ENST00000314759 GMPPBQ9Y5P6 360 aa13.12□□□□□ -0.31
SKA3-202ENST00000314759 TRPM7Q96QT4 1865 aa13.11□□□□□ -0.31
SKA3-202ENST00000314759 H3BNC9 293 aa13.11□□□□□ -0.31
SKA3-202ENST00000314759 H7C0S8 307 aa13.11□□□□□ -0.31
SKA3-202ENST00000314759 RGS10O43665 173 aa13.11□□□□□ -0.31
SKA3-202ENST00000314759 KDELR3O43731 214 aa13.11□□□□□ -0.31
SKA3-202ENST00000314759 GUCY1B2O75343 617 aa13.11□□□□□ -0.31
SKA3-202ENST00000314759 ERN1O75460 977 aaKnown RBP13.11□□□□□ -0.31
SKA3-202ENST00000314759 SMU1Q2TAY7 513 aa13.11□□□□□ -0.31
SKA3-202ENST00000314759 LRIF1Q5T3J3 769 aa13.11□□□□□ -0.31
SKA3-202ENST00000314759 DESI1Q6ICB0 168 aa13.11□□□□□ -0.31
SKA3-202ENST00000314759 SNX20Q7Z614 316 aa13.11□□□□□ -0.31
SKA3-202ENST00000314759 EID2BQ96D98 161 aa13.11□□□□□ -0.31
SKA3-202ENST00000314759 MTFMTQ96DP5 389 aaKnown RBP13.11□□□□□ -0.31
SKA3-202ENST00000314759 DHRS1Q96LJ7 313 aa13.11□□□□□ -0.31
SKA3-202ENST00000314759 GABARAPL1Q9H0R8 117 aa13.11□□□□□ -0.31
SKA3-202ENST00000314759 SP140LQ9H930 580 aa13.11□□□□□ -0.31
SKA3-202ENST00000314759 NEK6Q9HC98 313 aa13.11□□□□□ -0.31
SKA3-202ENST00000314759 OSGIN1Q9UJX0 560 aa13.11□□□□□ -0.31
SKA3-202ENST00000314759 HSPE1-MOB4S4R3N1 261 aa13.11□□□□□ -0.31
SKA3-202ENST00000314759 ASNA1O43681 348 aa13.11□□□□□ -0.31
SKA3-202ENST00000314759 DIRAS1O95057 198 aa13.11□□□□□ -0.31
SKA3-202ENST00000314759 PRAMEF12O95522 483 aa13.11□□□□□ -0.31
SKA3-202ENST00000314759 ZNF682O95780 498 aa13.11□□□□□ -0.31
SKA3-202ENST00000314759 PTPN6P29350 595 aa13.11□□□□□ -0.31
SKA3-202ENST00000314759 HOXA9P31269 272 aa13.11□□□□□ -0.31
SKA3-202ENST00000314759 CASP3P42574 277 aa13.11□□□□□ -0.31
SKA3-202ENST00000314759 CDKN2CP42773 168 aa13.11□□□□□ -0.31
SKA3-202ENST00000314759 NEK2P51955 445 aa13.11□□□□□ -0.31
SKA3-202ENST00000314759 OR2T5Q6IEZ7 315 aa13.11□□□□□ -0.31
SKA3-202ENST00000314759 SPATC1Q76KD6 591 aa13.11□□□□□ -0.31
SKA3-202ENST00000314759 PRSS48Q7RTY5 328 aa13.11□□□□□ -0.31
SKA3-202ENST00000314759 OR2T29Q8NH02 315 aa13.11□□□□□ -0.31
SKA3-202ENST00000314759 MCFD2Q8NI22 146 aa13.11□□□□□ -0.31
SKA3-202ENST00000314759 PYCR2Q96C36 320 aa13.11□□□□□ -0.31
SKA3-202ENST00000314759 APOL5Q9BWW9 433 aa13.11□□□□□ -0.31
SKA3-202ENST00000314759 ADGRE3Q9BY15 652 aa13.11□□□□□ -0.31
SKA3-202ENST00000314759 CD244Q9BZW8 370 aa13.11□□□□□ -0.31
SKA3-202ENST00000314759 KCNH6Q9H252 994 aa13.11□□□□□ -0.31
SKA3-202ENST00000314759 NDRG4Q9ULP0 352 aaKnown RBP13.11□□□□□ -0.31
SKA3-202ENST00000314759 CAB39Q9Y376 341 aaPredicted RBP13.11□□□□□ -0.31
SKA3-202ENST00000314759 ILVBLA1L0T0 632 aa13.1□□□□□ -0.31
SKA3-202ENST00000314759 MYO1GB0I1T2 1018 aa13.1□□□□□ -0.31
SKA3-202ENST00000314759 LOC730098B7Z3J9 87 aa13.1□□□□□ -0.31
SKA3-202ENST00000314759 MANBAO00462 879 aa13.1□□□□□ -0.31
SKA3-202ENST00000314759 TLR5O60602 858 aa13.1□□□□□ -0.31
SKA3-202ENST00000314759 C1QCP02747 245 aa13.1□□□□□ -0.31
SKA3-202ENST00000314759 LCKP06239 509 aa13.1□□□□□ -0.31
SKA3-202ENST00000314759 CD36P16671 472 aa13.1□□□□□ -0.31
SKA3-202ENST00000314759 TGFBR2P37173 567 aa13.1□□□□□ -0.31
SKA3-202ENST00000314759 SLC14A1Q13336 389 aa13.1□□□□□ -0.31
SKA3-202ENST00000314759 C5orf22Q49AR2 442 aa13.1□□□□□ -0.31
SKA3-202ENST00000314759 UBE2UQ5VVX9 321 aa13.1□□□□□ -0.31
SKA3-202ENST00000314759 NEK10Q6ZWH5 1172 aa13.1□□□□□ -0.31
SKA3-202ENST00000314759 CCDC71Q8IV32 467 aaPredicted RBP13.1□□□□□ -0.31
SKA3-202ENST00000314759 STK40Q8N2I9 435 aa13.1□□□□□ -0.31
SKA3-202ENST00000314759 LKAAEAR1Q8TD35 194 aa13.1□□□□□ -0.31
SKA3-202ENST00000314759 TBC1D20Q96BZ9 403 aa13.1□□□□□ -0.31
SKA3-202ENST00000314759 EGFL8Q99944 293 aa13.1□□□□□ -0.31
SKA3-202ENST00000314759 IL1RAPQ9NPH3 570 aa13.1□□□□□ -0.31
SKA3-202ENST00000314759 RASSF1Q9NS23 344 aa13.1□□□□□ -0.31
SKA3-202ENST00000314759 ASIC5Q9NY37 505 aa13.1□□□□□ -0.31
SKA3-202ENST00000314759 OPTCQ9UBM4 332 aa13.1□□□□□ -0.31
SKA3-202ENST00000314759 ERVW-1Q9UQF0 538 aa13.1□□□□□ -0.31
SKA3-202ENST00000314759 NOD1Q9Y239 953 aa13.1□□□□□ -0.31
SKA3-202ENST00000314759 DLGAP4Q9Y2H0 992 aa13.1□□□□□ -0.31
SKA3-202ENST00000314759 TESMINQ9Y4I5 508 aa13.1□□□□□ -0.31
SKA3-202ENST00000314759 OARD1Q9Y530 152 aa13.1□□□□□ -0.31
SKA3-202ENST00000314759 PCDHGA3Q9Y5H0 932 aa13.1□□□□□ -0.31
SKA3-202ENST00000314759 A0A096LPI6 279 aa13.1□□□□□ -0.31
SKA3-202ENST00000314759 CBX4O00257 560 aa13.1□□□□□ -0.31
SKA3-202ENST00000314759 KRT75O95678 551 aa13.1□□□□□ -0.31
SKA3-202ENST00000314759 NTRK1P04629 796 aa13.1□□□□□ -0.31
SKA3-202ENST00000314759 HOXB9P17482 250 aaPredicted RBP13.1□□□□□ -0.31
SKA3-202ENST00000314759 CA5AP35218 305 aa13.1□□□□□ -0.31
SKA3-202ENST00000314759 MAGEA11P43364 429 aa13.1□□□□□ -0.31
SKA3-202ENST00000314759 MAD2L1BPQ15013 274 aaPredicted RBP13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms