RNA–Protein interactions for RNA: ENST00000298130.4

SPTSSA-201, Transcript of serine palmitoyltransferase small subunit A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTSSA, Length 2,777 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTSSA-201ENST00000298130 GPN2Q9H9Y4 310 aaPredicted RBP23.77■■□□□ 1.4
SPTSSA-201ENST00000298130 STARD7Q9NQZ5 370 aa23.77■■□□□ 1.4
SPTSSA-201ENST00000298130 NDUFS2O75306 463 aa23.76■■□□□ 1.39
SPTSSA-201ENST00000298130 EBLN1P0CF75 366 aa23.76■■□□□ 1.39
SPTSSA-201ENST00000298130 PCMT1P22061 227 aa23.76■■□□□ 1.39
SPTSSA-201ENST00000298130 IGFBP5P24593 272 aa23.76■■□□□ 1.39
SPTSSA-201ENST00000298130 CCR7P32248 378 aa23.76■■□□□ 1.39
SPTSSA-201ENST00000298130 DDX39BQ13838 428 aaKnown RBP23.76■■□□□ 1.39
SPTSSA-201ENST00000298130 TMEM236Q5W0B7 351 aa23.76■■□□□ 1.39
SPTSSA-201ENST00000298130 CDK5RAP1Q96SZ6 601 aaKnown RBP23.76■■□□□ 1.39
SPTSSA-201ENST00000298130 ERVK-11Q9UQG0 969 aa23.76■■□□□ 1.39
SPTSSA-201ENST00000298130 OR51B4Q9Y5P0 310 aa23.76■■□□□ 1.39
SPTSSA-201ENST00000298130 GZMMP51124 257 aa23.76■■□□□ 1.39
SPTSSA-201ENST00000298130 CASP9P55211 416 aa23.76■■□□□ 1.39
SPTSSA-201ENST00000298130 MAD2L1Q13257 205 aaPredicted RBP23.76■■□□□ 1.39
SPTSSA-201ENST00000298130 CTF1Q16619 201 aa23.76■■□□□ 1.39
SPTSSA-201ENST00000298130 SVOPLQ8N434 492 aa23.76■■□□□ 1.39
SPTSSA-201ENST00000298130 OR7A2PQ8NGA2 310 aa23.76■■□□□ 1.39
SPTSSA-201ENST00000298130 USP7Q93009 1102 aa23.76■■□□□ 1.39
SPTSSA-201ENST00000298130 CLSTN3Q9BQT9 956 aa23.76■■□□□ 1.39
SPTSSA-201ENST00000298130 SH3GLB1Q9Y371 365 aa23.76■■□□□ 1.39
SPTSSA-201ENST00000298130 PRAMEF4O60810 478 aa23.75■■□□□ 1.39
SPTSSA-201ENST00000298130 WDR47O94967 919 aa23.75■■□□□ 1.39
SPTSSA-201ENST00000298130 SDC1P18827 310 aa23.75■■□□□ 1.39
SPTSSA-201ENST00000298130 TUFMP49411 452 aaKnown RBP23.75■■□□□ 1.39
SPTSSA-201ENST00000298130 RELAQ04206 551 aa23.75■■□□□ 1.39
SPTSSA-201ENST00000298130 BOP1Q14137 746 aaKnown RBP23.75■■□□□ 1.39
SPTSSA-201ENST00000298130 PRAMEF9Q5VWM5 478 aa23.75■■□□□ 1.39
SPTSSA-201ENST00000298130 TMCO2Q7Z6W1 182 aaPredicted RBP23.75■■□□□ 1.39
SPTSSA-201ENST00000298130 SLCO6A1Q86UG4 719 aa23.75■■□□□ 1.39
SPTSSA-201ENST00000298130 ZFP90Q8TF47 636 aa23.75■■□□□ 1.39
SPTSSA-201ENST00000298130 FAR1Q8WVX9 515 aa23.75■■□□□ 1.39
SPTSSA-201ENST00000298130 NTMT1Q9BV86 223 aa23.75■■□□□ 1.39
SPTSSA-201ENST00000298130 TBCCD1Q9NVR7 557 aa23.75■■□□□ 1.39
SPTSSA-201ENST00000298130 SLC22A14Q9Y267 594 aa23.75■■□□□ 1.39
SPTSSA-201ENST00000298130 RFXANKO14593 260 aa23.75■■□□□ 1.39
SPTSSA-201ENST00000298130 CPSF4O95639 269 aaKnown RBP23.75■■□□□ 1.39
SPTSSA-201ENST00000298130 CTSOP43234 321 aaPredicted RBP23.75■■□□□ 1.39
SPTSSA-201ENST00000298130 DAPP51397 102 aa23.75■■□□□ 1.39
SPTSSA-201ENST00000298130 NKX3-2P78367 333 aa23.75■■□□□ 1.39
SPTSSA-201ENST00000298130 ATP13A5Q4VNC0 1218 aa23.75■■□□□ 1.39
SPTSSA-201ENST00000298130 CPZQ66K79 652 aa23.75■■□□□ 1.39
SPTSSA-201ENST00000298130 B3GNT8Q7Z7M8 397 aa23.75■■□□□ 1.39
SPTSSA-201ENST00000298130 GLB1L3Q8NCI6 653 aaPredicted RBP23.75■■□□□ 1.39
SPTSSA-201ENST00000298130 GLMNQ92990 594 aa23.75■■□□□ 1.39
SPTSSA-201ENST00000298130 ITFG2Q969R8 447 aa23.75■■□□□ 1.39
SPTSSA-201ENST00000298130 SH3GL1Q99961 368 aa23.75■■□□□ 1.39
SPTSSA-201ENST00000298130 TMEM45AQ9NWC5 275 aa23.75■■□□□ 1.39
SPTSSA-201ENST00000298130 PNMA8BQ9ULN7 279 aaPredicted RBP23.75■■□□□ 1.39
SPTSSA-201ENST00000298130 CBFA2T3O75081 653 aa23.74■■□□□ 1.39
SPTSSA-201ENST00000298130 FADS2O95864 444 aaKnown RBP23.74■■□□□ 1.39
SPTSSA-201ENST00000298130 CST5P28325 142 aaPredicted RBP23.74■■□□□ 1.39
SPTSSA-201ENST00000298130 NRIP1P48552 1158 aa23.74■■□□□ 1.39
SPTSSA-201ENST00000298130 TUBA3CQ13748 450 aa23.74■■□□□ 1.39
SPTSSA-201ENST00000298130 RGS21Q2M5E4 152 aa23.74■■□□□ 1.39
SPTSSA-201ENST00000298130 INO80DQ53TQ3 878 aaPredicted RBP23.74■■□□□ 1.39
SPTSSA-201ENST00000298130 NEK5Q6P3R8 708 aa23.74■■□□□ 1.39
SPTSSA-201ENST00000298130 NXPE1Q8N323 547 aa23.74■■□□□ 1.39
SPTSSA-201ENST00000298130 MYLIPQ8WY64 445 aa23.74■■□□□ 1.39
SPTSSA-201ENST00000298130 ALG14Q96F25 216 aa23.74■■□□□ 1.39
SPTSSA-201ENST00000298130 USE1Q9NZ43 259 aa23.74■■□□□ 1.39
SPTSSA-201ENST00000298130 ENPP5Q9UJA9 477 aa23.74■■□□□ 1.39
SPTSSA-201ENST00000298130 BLOC1S6Q9UL45 172 aa23.74■■□□□ 1.39
SPTSSA-201ENST00000298130 ORC6Q9Y5N6 252 aa23.74■■□□□ 1.39
SPTSSA-201ENST00000298130 A0A1W2PQ45 241 aaPredicted RBP23.74■■□□□ 1.39
SPTSSA-201ENST00000298130 A0A1W2PQY0 241 aa23.74■■□□□ 1.39
SPTSSA-201ENST00000298130 CA12O43570 354 aa23.74■■□□□ 1.39
SPTSSA-201ENST00000298130 ANXA5P08758 320 aa23.74■■□□□ 1.39
SPTSSA-201ENST00000298130 PTPN6P29350 595 aa23.74■■□□□ 1.39
SPTSSA-201ENST00000298130 AQP1P29972 269 aa23.74■■□□□ 1.39
SPTSSA-201ENST00000298130 CLK3P49761 638 aaKnown RBP23.74■■□□□ 1.39
SPTSSA-201ENST00000298130 CBX3Q13185 183 aa23.74■■□□□ 1.39
SPTSSA-201ENST00000298130 UBE2R2Q712K3 238 aaPredicted RBP23.74■■□□□ 1.39
SPTSSA-201ENST00000298130 TRUB1Q8WWH5 349 aaKnown RBP23.74■■□□□ 1.39
SPTSSA-201ENST00000298130 FOXJ1Q92949 421 aa23.74■■□□□ 1.39
SPTSSA-201ENST00000298130 SH3YL1Q96HL8 342 aaPredicted RBP23.74■■□□□ 1.39
SPTSSA-201ENST00000298130 TRPS1Q9UHF7 1281 aa23.74■■□□□ 1.39
SPTSSA-201ENST00000298130 ERGIC3Q9Y282 383 aa23.74■■□□□ 1.39
SPTSSA-201ENST00000298130 ZNF99A8MXY4 864 aaPredicted RBP23.74■■□□□ 1.39
SPTSSA-201ENST00000298130 KRT6AP02538 564 aa23.74■■□□□ 1.39
SPTSSA-201ENST00000298130 KRT6BP04259 564 aa23.74■■□□□ 1.39
SPTSSA-201ENST00000298130 PSMB9P28065 219 aa23.74■■□□□ 1.39
SPTSSA-201ENST00000298130 CD6P30203 668 aa23.74■■□□□ 1.39
SPTSSA-201ENST00000298130 KRT6CP48668 564 aa23.74■■□□□ 1.39
SPTSSA-201ENST00000298130 B4GALNT1Q00973 533 aa23.74■■□□□ 1.39
SPTSSA-201ENST00000298130 NPTX1Q15818 432 aa23.74■■□□□ 1.39
SPTSSA-201ENST00000298130 PTCHD3Q3KNS1 767 aa23.74■■□□□ 1.39
SPTSSA-201ENST00000298130 ADPRMQ3LIE5 342 aa23.74■■□□□ 1.39
SPTSSA-201ENST00000298130 DGKKQ5KSL6 1271 aa23.74■■□□□ 1.39
SPTSSA-201ENST00000298130 SERPINA13PQ6UXR4 307 aa23.74■■□□□ 1.39
SPTSSA-201ENST00000298130 ZNF621Q6ZSS3 439 aa23.74■■□□□ 1.39
SPTSSA-201ENST00000298130 CALHM3Q86XJ0 350 aa23.74■■□□□ 1.39
SPTSSA-201ENST00000298130 CLECL1Q8IZS7 167 aa23.74■■□□□ 1.39
SPTSSA-201ENST00000298130 TMEM132CQ8N3T6 1108 aa23.74■■□□□ 1.39
SPTSSA-201ENST00000298130 CNDP2Q96KP4 475 aaKnown RBP23.74■■□□□ 1.39
SPTSSA-201ENST00000298130 TMEM247A6NEH6 219 aa23.73■■□□□ 1.39
SPTSSA-201ENST00000298130 SULT1C4O75897 302 aa23.73■■□□□ 1.39
SPTSSA-201ENST00000298130 ZNF12P17014 697 aa23.73■■□□□ 1.39
SPTSSA-201ENST00000298130 RPS3P23396 243 aaKnown RBP eCLIP23.73■■□□□ 1.397e-9■■■■■ 40.5
SPTSSA-201ENST00000298130 TPP2P29144 1249 aaPredicted RBP23.73■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms