RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 NEU3Q9UQ49 428 aa14.03□□□□□ -0.16
SDC1-201ENST00000254351 MED16Q9Y2X0 877 aa14.03□□□□□ -0.16
SDC1-201ENST00000254351 NAALAD2Q9Y3Q0 740 aa14.03□□□□□ -0.16
SDC1-201ENST00000254351 RGS13O14921 159 aa14.02□□□□□ -0.16
SDC1-201ENST00000254351 PTHP01270 115 aa14.02□□□□□ -0.16
SDC1-201ENST00000254351 CPSF6Q16630 551 aaKnown RBP eCLIP14.02□□□□□ -0.16
SDC1-201ENST00000254351 FAM171A1Q5VUB5 890 aa14.02□□□□□ -0.16
SDC1-201ENST00000254351 PDE12Q6L8Q7 609 aaKnown RBP14.02□□□□□ -0.16
SDC1-201ENST00000254351 GLCCI1Q86VQ1 547 aa14.02□□□□□ -0.16
SDC1-201ENST00000254351 NLRP8Q86W28 1048 aa14.02□□□□□ -0.16
SDC1-201ENST00000254351 CFAP52Q8N1V2 620 aa14.02□□□□□ -0.16
SDC1-201ENST00000254351 PCNPQ8WW12 178 aaKnown RBP14.02□□□□□ -0.16
SDC1-201ENST00000254351 ARPC5LQ9BPX5 153 aa14.02□□□□□ -0.16
SDC1-201ENST00000254351 CNPPD1Q9BV87 410 aa14.02□□□□□ -0.16
SDC1-201ENST00000254351 AFF4Q9UHB7 1163 aaKnown RBP14.02□□□□□ -0.16
SDC1-201ENST00000254351 ZNF490Q9ULM2 529 aaPredicted RBP14.02□□□□□ -0.16
SDC1-201ENST00000254351 IPPQ9Y573 584 aa14.02□□□□□ -0.16
SDC1-201ENST00000254351 PAPPA2Q9BXP8 1791 aa14.02□□□□□ -0.16
SDC1-201ENST00000254351 SAGE2PA6NJ88 616 aa14.02□□□□□ -0.17
SDC1-201ENST00000254351 C12orf71A8MTZ7 269 aa14.02□□□□□ -0.17
SDC1-201ENST00000254351 SLC16A6O15403 523 aa14.02□□□□□ -0.17
SDC1-201ENST00000254351 KIAA0513O60268 411 aa14.02□□□□□ -0.17
SDC1-201ENST00000254351 BRCC3P46736 316 aa14.02□□□□□ -0.17
SDC1-201ENST00000254351 STC1P52823 247 aa14.02□□□□□ -0.17
SDC1-201ENST00000254351 UAP1L1Q3KQV9 507 aa14.02□□□□□ -0.17
SDC1-201ENST00000254351 PSAPL1Q6NUJ1 521 aa14.02□□□□□ -0.17
SDC1-201ENST00000254351 PNCKQ6P2M8 343 aa14.02□□□□□ -0.17
SDC1-201ENST00000254351 MBOAT1Q6ZNC8 495 aa14.02□□□□□ -0.17
SDC1-201ENST00000254351 STX19Q8N4C7 294 aa14.02□□□□□ -0.17
SDC1-201ENST00000254351 CDKN2AIPNLQ96HQ2 116 aa14.02□□□□□ -0.17
SDC1-201ENST00000254351 ST6GAL2Q96JF0 529 aa14.02□□□□□ -0.17
SDC1-201ENST00000254351 C16orf70Q9BSU1 422 aa14.02□□□□□ -0.17
SDC1-201ENST00000254351 SYTL2Q9HCH5 934 aa14.02□□□□□ -0.17
SDC1-201ENST00000254351 TRMT6Q9UJA5 497 aaKnown RBP14.02□□□□□ -0.17
SDC1-201ENST00000254351 MAU2Q9Y6X3 613 aa14.02□□□□□ -0.17
SDC1-201ENST00000254351 OR6C70A6NIJ9 312 aa14.01□□□□□ -0.17
SDC1-201ENST00000254351 F8W810 466 aa14.01□□□□□ -0.17
SDC1-201ENST00000254351 SEMA3DO95025 777 aa14.01□□□□□ -0.17
SDC1-201ENST00000254351 WISP3O95389 354 aaPredicted RBP14.01□□□□□ -0.17
SDC1-201ENST00000254351 HOXA9P31269 272 aa14.01□□□□□ -0.17
SDC1-201ENST00000254351 RAB25P57735 213 aa14.01□□□□□ -0.17
SDC1-201ENST00000254351 GNG2P59768 71 aa14.01□□□□□ -0.17
SDC1-201ENST00000254351 TIGD7Q6NT04 549 aaPredicted RBP14.01□□□□□ -0.17
SDC1-201ENST00000254351 ANGPTL8Q6UXH0 198 aa14.01□□□□□ -0.17
SDC1-201ENST00000254351 ENTHD1Q8IYW4 607 aa14.01□□□□□ -0.17
SDC1-201ENST00000254351 ZNF675Q8TD23 568 aa14.01□□□□□ -0.17
SDC1-201ENST00000254351 JPH3Q8WXH2 748 aaPredicted RBP14.01□□□□□ -0.17
SDC1-201ENST00000254351 EGLN2Q96KS0 407 aa14.01□□□□□ -0.17
SDC1-201ENST00000254351 GORASP2Q9H8Y8 452 aa14.01□□□□□ -0.17
SDC1-201ENST00000254351 MRM3Q9HC36 420 aaKnown RBP14.01□□□□□ -0.17
SDC1-201ENST00000254351 CCDC177Q9NQR7 707 aaPredicted RBP14.01□□□□□ -0.17
SDC1-201ENST00000254351 MAT2BQ9NZL9 334 aa14.01□□□□□ -0.17
SDC1-201ENST00000254351 TEKT2Q9UIF3 430 aa14.01□□□□□ -0.17
SDC1-201ENST00000254351 LCTP09848 1927 aa14.01□□□□□ -0.17
SDC1-201ENST00000254351 MROH6A6NGR9 719 aa14.01□□□□□ -0.17
SDC1-201ENST00000254351 ITGB1P05556 798 aa14.01□□□□□ -0.17
SDC1-201ENST00000254351 ATXN1LP0C7T5 689 aaKnown RBP14.01□□□□□ -0.17
SDC1-201ENST00000254351 PPP3CCP48454 512 aa14.01□□□□□ -0.17
SDC1-201ENST00000254351 AIF1P55008 147 aa14.01□□□□□ -0.17
SDC1-201ENST00000254351 BAK1Q16611 211 aa14.01□□□□□ -0.17
SDC1-201ENST00000254351 OR2T5Q6IEZ7 315 aa14.01□□□□□ -0.17
SDC1-201ENST00000254351 SUSD1Q6UWL2 747 aa14.01□□□□□ -0.17
SDC1-201ENST00000254351 ALKAL1Q6UXT8 129 aa14.01□□□□□ -0.17
SDC1-201ENST00000254351 LACC1Q8IV20 430 aa14.01□□□□□ -0.17
SDC1-201ENST00000254351 RNF175Q8N4F7 328 aa14.01□□□□□ -0.17
SDC1-201ENST00000254351 OR5H6Q8NGV6 325 aa14.01□□□□□ -0.17
SDC1-201ENST00000254351 OR2T29Q8NH02 315 aa14.01□□□□□ -0.17
SDC1-201ENST00000254351 RDH12Q96NR8 316 aa14.01□□□□□ -0.17
SDC1-201ENST00000254351 SPON2Q9BUD6 331 aa14.01□□□□□ -0.17
SDC1-201ENST00000254351 H3BQ06 376 aaPredicted RBP14.01□□□□□ -0.17
SDC1-201ENST00000254351 AKR7A2O43488 359 aa14.01□□□□□ -0.17
SDC1-201ENST00000254351 ALX3O95076 343 aa14.01□□□□□ -0.17
SDC1-201ENST00000254351 GLUD1P00367 558 aa14.01□□□□□ -0.17
SDC1-201ENST00000254351 BRMS1LQ5PSV4 323 aa14.01□□□□□ -0.17
SDC1-201ENST00000254351 GOLGA7Q7Z5G4 137 aa14.01□□□□□ -0.17
SDC1-201ENST00000254351 CAMKK1Q8N5S9 505 aa14.01□□□□□ -0.17
SDC1-201ENST00000254351 DPP10Q8N608 796 aa14.01□□□□□ -0.17
SDC1-201ENST00000254351 NATD1Q8N6N6 113 aa14.01□□□□□ -0.17
SDC1-201ENST00000254351 RHEBL1Q8TAI7 183 aa14.01□□□□□ -0.17
SDC1-201ENST00000254351 OR5M11Q96RB7 305 aa14.01□□□□□ -0.17
SDC1-201ENST00000254351 ZNF717Q9BY31 904 aaPredicted RBP14.01□□□□□ -0.17
SDC1-201ENST00000254351 MIOSQ9NXC5 875 aa14.01□□□□□ -0.17
SDC1-201ENST00000254351 TBC1D24Q9ULP9 559 aa14.01□□□□□ -0.17
SDC1-201ENST00000254351 PTGESO14684 152 aa14□□□□□ -0.17
SDC1-201ENST00000254351 OPN1SWP03999 348 aa14□□□□□ -0.17
SDC1-201ENST00000254351 NTRK1P04629 796 aa14□□□□□ -0.17
SDC1-201ENST00000254351 RPLP0P05388 317 aaKnown RBP14□□□□□ -0.17
SDC1-201ENST00000254351 WARSP23381 471 aaKnown RBP14□□□□□ -0.17
SDC1-201ENST00000254351 ACVR2AP27037 513 aa14□□□□□ -0.17
SDC1-201ENST00000254351 POU1F1P28069 291 aa14□□□□□ -0.17
SDC1-201ENST00000254351 PNPLA4P41247 253 aa14□□□□□ -0.17
SDC1-201ENST00000254351 PIK3CBP42338 1070 aa14□□□□□ -0.17
SDC1-201ENST00000254351 SF1Q15637 639 aaKnown RBP14□□□□□ -0.17
SDC1-201ENST00000254351 KIAA1614Q5VZ46 1190 aa14□□□□□ -0.17
SDC1-201ENST00000254351 TTC23LQ6PF05 361 aa14□□□□□ -0.17
SDC1-201ENST00000254351 PRSS48Q7RTY5 328 aa14□□□□□ -0.17
SDC1-201ENST00000254351 PAF1Q8N7H5 531 aa14□□□□□ -0.17
SDC1-201ENST00000254351 RTL3Q8N8U3 475 aaKnown RBP14□□□□□ -0.17
SDC1-201ENST00000254351 GPR151Q8TDV0 419 aa14□□□□□ -0.17
SDC1-201ENST00000254351 APH1BQ8WW43 257 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms