RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 SRMSQ9H3Y6 488 aa17.28■□□□□ 0.36
CLN3-247ENST00000636351 LATS2Q9NRM7 1088 aa17.28■□□□□ 0.36
CLN3-247ENST00000636351 POLG2Q9UHN1 485 aa17.28■□□□□ 0.36
CLN3-247ENST00000636351 MED16Q9Y2X0 877 aa17.28■□□□□ 0.36
CLN3-247ENST00000636351 DHRS7Q9Y394 339 aa17.28■□□□□ 0.36
CLN3-247ENST00000636351 B3GALT1Q9Y5Z6 326 aa17.28■□□□□ 0.36
CLN3-247ENST00000636351 FAM95CA0A1B0GW59 222 aa17.27■□□□□ 0.36
CLN3-247ENST00000636351 OR6C74A6NCV1 312 aa17.27■□□□□ 0.36
CLN3-247ENST00000636351 CSTF2P33240 577 aaKnown RBP eCLIP17.27■□□□□ 0.36
CLN3-247ENST00000636351 GP5P40197 560 aa17.27■□□□□ 0.36
CLN3-247ENST00000636351 BDKRB1P46663 353 aa17.27■□□□□ 0.36
CLN3-247ENST00000636351 GFERP55789 205 aa17.27■□□□□ 0.36
CLN3-247ENST00000636351 PRKAA1Q13131 559 aa17.27■□□□□ 0.36
CLN3-247ENST00000636351 GBX1Q14549 363 aa17.27■□□□□ 0.36
CLN3-247ENST00000636351 SLMAPQ14BN4 828 aa17.27■□□□□ 0.36
CLN3-247ENST00000636351 KLHL38Q2WGJ6 581 aa17.27■□□□□ 0.36
CLN3-247ENST00000636351 TMEM71Q6P5X7 295 aa17.27■□□□□ 0.36
CLN3-247ENST00000636351 TTC23LQ6PF05 361 aa17.27■□□□□ 0.36
CLN3-247ENST00000636351 WDR74Q6RFH5 385 aaPredicted RBP17.27■□□□□ 0.36
CLN3-247ENST00000636351 SLC25A18Q9H1K4 315 aa17.27■□□□□ 0.36
CLN3-247ENST00000636351 RHOJQ9H4E5 214 aa17.27■□□□□ 0.36
CLN3-247ENST00000636351 XKR8Q9H6D3 395 aa17.27■□□□□ 0.36
CLN3-247ENST00000636351 GEMIN8Q9NWZ8 242 aaKnown RBP17.27■□□□□ 0.36
CLN3-247ENST00000636351 OGFRQ9NZT2 677 aa17.27■□□□□ 0.36
CLN3-247ENST00000636351 KLHL42Q9P2K6 505 aa17.27■□□□□ 0.36
CLN3-247ENST00000636351 PLAGL1Q9UM63 463 aa17.27■□□□□ 0.36
CLN3-247ENST00000636351 NFS1Q9Y697 457 aa17.27■□□□□ 0.36
CLN3-247ENST00000636351 GSAPA4D1B5 854 aa17.26■□□□□ 0.35
CLN3-247ENST00000636351 A8MU76 341 aa17.26■□□□□ 0.35
CLN3-247ENST00000636351 CAPN5O15484 640 aaPredicted RBP17.26■□□□□ 0.35
CLN3-247ENST00000636351 RASSF9O75901 435 aa17.26■□□□□ 0.35
CLN3-247ENST00000636351 ENO3P13929 434 aaPredicted RBP17.26■□□□□ 0.35
CLN3-247ENST00000636351 LIFP15018 202 aa17.26■□□□□ 0.35
CLN3-247ENST00000636351 RGS4P49798 205 aa17.26■□□□□ 0.35
CLN3-247ENST00000636351 SLC12A2P55011 1212 aa17.26■□□□□ 0.35
CLN3-247ENST00000636351 SQSTM1Q13501 440 aa17.26■□□□□ 0.35
CLN3-247ENST00000636351 NAB1Q13506 487 aa17.26■□□□□ 0.35
CLN3-247ENST00000636351 BORAQ6PGQ7 559 aa17.26■□□□□ 0.35
CLN3-247ENST00000636351 CYS1Q717R9 158 aa17.26■□□□□ 0.35
CLN3-247ENST00000636351 AMIGO1Q86WK6 493 aa17.26■□□□□ 0.35
CLN3-247ENST00000636351 FAM129CQ86XR2 697 aa17.26■□□□□ 0.35
CLN3-247ENST00000636351 RELL1Q8IUW5 271 aa17.26■□□□□ 0.35
CLN3-247ENST00000636351 SPNS2Q8IVW8 549 aa17.26■□□□□ 0.35
CLN3-247ENST00000636351 CACNA2D3Q8IZS8 1091 aa17.26■□□□□ 0.35
CLN3-247ENST00000636351 MRRFQ96E11 262 aaKnown RBP17.26■□□□□ 0.35
CLN3-247ENST00000636351 ZDHHC12Q96GR4 267 aa17.26■□□□□ 0.35
CLN3-247ENST00000636351 VPS39Q96JC1 886 aa17.26■□□□□ 0.35
CLN3-247ENST00000636351 DDA1Q9BW61 102 aa17.26■□□□□ 0.35
CLN3-247ENST00000636351 OCIAD1Q9NX40 245 aa17.26■□□□□ 0.35
CLN3-247ENST00000636351 SLC39A1Q9NY26 324 aa17.26■□□□□ 0.35
CLN3-247ENST00000636351 CIDEBQ9UHD4 219 aa17.26■□□□□ 0.35
CLN3-247ENST00000636351 VWA7Q9Y334 891 aa17.26■□□□□ 0.35
CLN3-247ENST00000636351 SDK2Q58EX2 2172 aa17.26■□□□□ 0.35
CLN3-247ENST00000636351 MN1Q10571 1320 aaPredicted RBP17.25■□□□□ 0.35
CLN3-247ENST00000636351 OR5K3A6NET4 321 aa17.25■□□□□ 0.35
CLN3-247ENST00000636351 EFCAB7A8K855 629 aa17.25■□□□□ 0.35
CLN3-247ENST00000636351 RAD1O60671 282 aa17.25■□□□□ 0.35
CLN3-247ENST00000636351 CBSLP0DN79 551 aa17.25■□□□□ 0.35
CLN3-247ENST00000636351 POLR2CP19387 275 aaPredicted RBP17.25■□□□□ 0.35
CLN3-247ENST00000636351 FDXRP22570 491 aa17.25■□□□□ 0.35
CLN3-247ENST00000636351 SHMT2P34897 504 aa17.25■□□□□ 0.35
CLN3-247ENST00000636351 CBSP35520 551 aa17.25■□□□□ 0.35
CLN3-247ENST00000636351 SKIV2L2P42285 1042 aaKnown RBP17.25■□□□□ 0.35
CLN3-247ENST00000636351 ILF2Q12905 390 aaKnown RBP17.25■□□□□ 0.35
CLN3-247ENST00000636351 UAP1Q16222 522 aaPredicted RBP17.25■□□□□ 0.35
CLN3-247ENST00000636351 UBAP2Q5T6F2 1119 aaKnown RBP17.25■□□□□ 0.35
CLN3-247ENST00000636351 FAM92BQ6ZTR7 304 aa17.25■□□□□ 0.35
CLN3-247ENST00000636351 PIWIL4Q7Z3Z4 852 aaKnown RBP17.25■□□□□ 0.35
CLN3-247ENST00000636351 MYO1HQ8N1T3 1032 aa17.25■□□□□ 0.35
CLN3-247ENST00000636351 LINGO1Q96FE5 620 aa17.25■□□□□ 0.35
CLN3-247ENST00000636351 OLFM1Q99784 485 aa17.25■□□□□ 0.35
CLN3-247ENST00000636351 ASPSCR1Q9BZE9 553 aa17.25■□□□□ 0.35
CLN3-247ENST00000636351 TFB2MQ9H5Q4 396 aaKnown RBP17.25■□□□□ 0.35
CLN3-247ENST00000636351 HRASLS2Q9NWW9 162 aa17.25■□□□□ 0.35
CLN3-247ENST00000636351 SLC39A10Q9ULF5 831 aa17.25■□□□□ 0.35
CLN3-247ENST00000636351 ICKQ9UPZ9 632 aa17.25■□□□□ 0.35
CLN3-247ENST00000636351 B4E171 279 aa17.24■□□□□ 0.35
CLN3-247ENST00000636351 C1orf105O95561 183 aa17.24■□□□□ 0.35
CLN3-247ENST00000636351 CATP04040 527 aaKnown RBP17.24■□□□□ 0.35
CLN3-247ENST00000636351 CCNFP41002 786 aa17.24■□□□□ 0.35
CLN3-247ENST00000636351 TSPAN7P41732 249 aa17.24■□□□□ 0.35
CLN3-247ENST00000636351 POLE2P56282 527 aa17.24■□□□□ 0.35
CLN3-247ENST00000636351 PPP1CAP62136 330 aa17.24■□□□□ 0.35
CLN3-247ENST00000636351 TUBB4BP68371 445 aa17.24■□□□□ 0.35
CLN3-247ENST00000636351 DCAF12Q5T6F0 453 aa17.24■□□□□ 0.35
CLN3-247ENST00000636351 ANKS6Q68DC2 871 aa17.24■□□□□ 0.35
CLN3-247ENST00000636351 LRRC8EQ6NSJ5 796 aa17.24■□□□□ 0.35
CLN3-247ENST00000636351 PAQR3Q6TCH7 311 aa17.24■□□□□ 0.35
CLN3-247ENST00000636351 NEK10Q6ZWH5 1172 aa17.24■□□□□ 0.35
CLN3-247ENST00000636351 RAB42Q8N4Z0 105 aa17.24■□□□□ 0.35
CLN3-247ENST00000636351 UHMK1Q8TAS1 419 aaKnown RBP17.24■□□□□ 0.35
CLN3-247ENST00000636351 MAGEC3Q8TD91 643 aa17.24■□□□□ 0.35
CLN3-247ENST00000636351 CYTH2Q99418 400 aa17.24■□□□□ 0.35
CLN3-247ENST00000636351 RBBP8Q99708 897 aa17.24■□□□□ 0.35
CLN3-247ENST00000636351 NRTNQ99748 197 aa17.24■□□□□ 0.35
CLN3-247ENST00000636351 ADNPQ9H2P0 1102 aa17.24■□□□□ 0.35
CLN3-247ENST00000636351 NOL12Q9UGY1 213 aaKnown RBP eCLIP17.24■□□□□ 0.35
CLN3-247ENST00000636351 V9GYY5 206 aaPredicted RBP17.24■□□□□ 0.35
CLN3-247ENST00000636351 EIF3FO00303 357 aaPredicted RBP17.23■□□□□ 0.35
CLN3-247ENST00000636351 BTN3A1O00481 513 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms