RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 PDE1AP54750 535 aa4.32□□□□□ -1.72
LINC00540-201ENST00000611481 ADPRHP54922 357 aa4.32□□□□□ -1.72
LINC00540-201ENST00000611481 SNX16P57768 344 aa4.32□□□□□ -1.72
LINC00540-201ENST00000611481 HNRNPKP61978 463 aaKnown RBP eCLIP4.32□□□□□ -1.72
LINC00540-201ENST00000611481 RPS16P62249 146 aaKnown RBP4.32□□□□□ -1.72
LINC00540-201ENST00000611481 C16orf72Q14CZ0 275 aa4.32□□□□□ -1.72
LINC00540-201ENST00000611481 ZBTB6Q15916 424 aa4.32□□□□□ -1.72
LINC00540-201ENST00000611481 C9orf57Q5W0N0 161 aa4.32□□□□□ -1.72
LINC00540-201ENST00000611481 TMEM215Q68D42 235 aa4.32□□□□□ -1.72
LINC00540-201ENST00000611481 SFRP4Q6FHJ7 346 aaPredicted RBP4.32□□□□□ -1.72
LINC00540-201ENST00000611481 LIN54Q6MZP7 749 aa4.32□□□□□ -1.72
LINC00540-201ENST00000611481 B4GALNT4Q76KP1 1039 aa4.32□□□□□ -1.72
LINC00540-201ENST00000611481 GALNT13Q8IUC8 556 aa4.32□□□□□ -1.72
LINC00540-201ENST00000611481 CEP97Q8IW35 865 aa4.32□□□□□ -1.72
LINC00540-201ENST00000611481 LMNTD2Q8IXW0 634 aa4.32□□□□□ -1.72
LINC00540-201ENST00000611481 CCDC150Q8NCX0 1101 aa4.32□□□□□ -1.72
LINC00540-201ENST00000611481 MCPH1Q8NEM0 835 aa4.32□□□□□ -1.72
LINC00540-201ENST00000611481 RP9Q8TA86 221 aaKnown RBP4.32□□□□□ -1.72
LINC00540-201ENST00000611481 LMX1AQ8TE12 382 aa4.32□□□□□ -1.72
LINC00540-201ENST00000611481 TBCKQ8TEA7 893 aa4.32□□□□□ -1.72
LINC00540-201ENST00000611481 ITLN2Q8WWU7 325 aaPredicted RBP4.32□□□□□ -1.72
LINC00540-201ENST00000611481 NRGNQ92686 78 aa4.32□□□□□ -1.72
LINC00540-201ENST00000611481 COQ8BQ96D53 544 aa4.32□□□□□ -1.72
LINC00540-201ENST00000611481 PIWIL1Q96J94 861 aaKnown RBP4.32□□□□□ -1.72
LINC00540-201ENST00000611481 ZBTB45Q96K62 511 aaPredicted RBP4.32□□□□□ -1.72
LINC00540-201ENST00000611481 SPATA17Q96L03 361 aa4.32□□□□□ -1.72
LINC00540-201ENST00000611481 VRK1Q99986 396 aaPredicted RBP4.32□□□□□ -1.72
LINC00540-201ENST00000611481 MACROD1Q9BQ69 325 aa4.32□□□□□ -1.72
LINC00540-201ENST00000611481 SLC25A23Q9BV35 468 aa4.32□□□□□ -1.72
LINC00540-201ENST00000611481 TRIM54Q9BYV2 358 aa4.32□□□□□ -1.72
LINC00540-201ENST00000611481 B3GNT4Q9C0J1 378 aa4.32□□□□□ -1.72
LINC00540-201ENST00000611481 ZMYND12Q9H0C1 365 aa4.32□□□□□ -1.72
LINC00540-201ENST00000611481 LRRN3Q9H3W5 708 aa4.32□□□□□ -1.72
LINC00540-201ENST00000611481 POLD4Q9HCU8 107 aa4.32□□□□□ -1.72
LINC00540-201ENST00000611481 MRPL40Q9NQ50 206 aaKnown RBP4.32□□□□□ -1.72
LINC00540-201ENST00000611481 DIAPH3Q9NSV4 1193 aa4.32□□□□□ -1.72
LINC00540-201ENST00000611481 AKAP7Q9P0M2 348 aaPredicted RBP4.32□□□□□ -1.72
LINC00540-201ENST00000611481 RCOR3Q9P2K3 495 aaPredicted RBP4.32□□□□□ -1.72
LINC00540-201ENST00000611481 KLHL13Q9P2N7 655 aa4.32□□□□□ -1.72
LINC00540-201ENST00000611481 ODF2LQ9ULJ1 636 aa4.32□□□□□ -1.72
LINC00540-201ENST00000611481 FZD4Q9ULV1 537 aa4.32□□□□□ -1.72
LINC00540-201ENST00000611481 SCML1Q9UN30 329 aa4.32□□□□□ -1.72
LINC00540-201ENST00000611481 PCDHA12Q9UN75 941 aa4.32□□□□□ -1.72
LINC00540-201ENST00000611481 MYO7BQ6PIF6 2116 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 TRIM64A6NGJ6 449 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 HMX3A6NHT5 357 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 TRIM64BA6NI03 449 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 E7EWF7 191 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 POC1B-GALNT4F8VUJ3 575 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 C19orf84I3L1E1 186 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 PIRO00625 290 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 CLGNO14967 610 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 SLC37A4O43826 429 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 RNASEH1O60930 286 aaKnown RBP4.31□□□□□ -1.72
LINC00540-201ENST00000611481 PTP4A3O75365 173 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 USP1O94782 785 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 SLITRK3O94933 977 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 KIF20AO95235 890 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 CYP21A2P08686 494 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 PRLRP16471 622 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 MUTP22033 750 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 ATP5F1P24539 256 aaPredicted RBP4.31□□□□□ -1.72
LINC00540-201ENST00000611481 IL1R2P27930 398 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 GNA11P29992 359 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 HNRNPH3P31942 346 aaKnown RBP4.31□□□□□ -1.72
LINC00540-201ENST00000611481 SLC8A1P32418 973 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 MAGEA11P43364 429 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 RABIFP47224 123 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 TAF6P49848 677 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 TOB1P50616 345 aaPredicted RBP4.31□□□□□ -1.72
LINC00540-201ENST00000611481 EFNA5P52803 228 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 ZFP36L1Q07352 338 aaKnown RBP4.31□□□□□ -1.72
LINC00540-201ENST00000611481 SLC12A1Q13621 1099 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 CST6Q15828 149 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 TSTQ16762 297 aaKnown RBP4.31□□□□□ -1.72
LINC00540-201ENST00000611481 CFAP221Q4G0U5 840 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 SETMARQ53H47 684 aaPredicted RBP4.31□□□□□ -1.72
LINC00540-201ENST00000611481 CASC1Q6TDU7 716 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 TMEM108Q6UXF1 575 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 LINGO4Q6UY18 593 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 BBS12Q6ZW61 710 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 KDELC2Q7Z4H8 507 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 PPP1R32Q7Z5V6 425 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 CATSPER3Q86XQ3 398 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 MMAAQ8IVH4 418 aaKnown RBP4.31□□□□□ -1.72
LINC00540-201ENST00000611481 HSCBQ8IWL3 235 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 MB21D2Q8IYB1 491 aaPredicted RBP4.31□□□□□ -1.72
LINC00540-201ENST00000611481 IQCKQ8N0W5 287 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 GALNT4Q8N4A0 578 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 Q8N9G6 341 aaPredicted RBP4.31□□□□□ -1.72
LINC00540-201ENST00000611481 MSANTD4Q8NCY6 345 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 CEP70Q8NHQ1 597 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 IPCEF1Q8WWN9 437 aaPredicted RBP4.31□□□□□ -1.72
LINC00540-201ENST00000611481 PNPLA2Q96AD5 504 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 C18orf12Q96KH6 178 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 COG8Q96MW5 612 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 PPP1R9BQ96SB3 815 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 MAGEB5Q9BZ81 275 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 GPR63Q9BZJ6 419 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 TINAGL1Q9GZM7 467 aaPredicted RBP4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms