RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	FAM126A	Q9BYI3	521 aa	Predicted RBP	11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	ZNF696	Q9H7X3	374 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	TNFRSF12A	Q9NP84	129 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	SDR39U1	Q9NRG7	319 aa	Predicted RBP	11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	WSB2	Q9NYS7	404 aa	Predicted RBP	11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	ADA2	Q9NZK5	511 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	ABCD2	Q9UBJ2	740 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	OR1A2	Q9Y585	309 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	AP4S1	Q9Y587	144 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	DNAJC15	Q9Y5T4	150 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	C15orf38-AP3S2	A0A0A6YYH1	394 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	EIF4E1B	A6NMX2	242 aa	Known RBP	11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	FPGT	O14772	594 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	MLYCD	O95822	493 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	ZCCHC18	P0CG32	403 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	MYCLP1	P12525	358 aa	Predicted RBP	11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	CD1E	P15812	388 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	ZNF8	P17098	575 aa	Predicted RBP	11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	HNRNPA2B1	P22626	353 aa	Known RBP	11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	AKT2	P31751	481 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	IGFALS	P35858	605 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	CXCL12	P48061	93 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	KCNC1	P48547	511 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	SH3BP2	P78314	561 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	HSPA14	Q0VDF9	509 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	BNIP2	Q12982	314 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	BOP1	Q14137	746 aa	Known RBP	11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	FOXB2	Q5VYV0	432 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	MAMSTR	Q6ZN01	415 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	ARPIN	Q7Z6K5	226 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	BEND7	Q8N7W2	519 aa	Predicted RBP	11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	ZNF483	Q8TF39	744 aa	Predicted RBP	11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	FUBP1	Q96AE4	644 aa	Known RBP	11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	GPATCH1	Q9BRR8	931 aa	Known RBP	11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	LGR4	Q9BXB1	951 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	TPSD1	Q9BZJ3	242 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	TRIM15	Q9C019	465 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	FZD3	Q9NPG1	666 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	ACSS2	Q9NR19	701 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	ARMC1	Q9NVT9	282 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	GID8	Q9NWU2	228 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	CCDC167	Q9P0B6	97 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	G3BP2	Q9UN86	482 aa	Known RBP	11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	TMEM98	Q9Y2Y6	226 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	LRRK1	Q38SD2	2015 aa		11.4	□□□□□ -0.58
VRK3-223	ENST00000601341	AQP12B	A6NM10	295 aa		11.4	□□□□□ -0.58
VRK3-223	ENST00000601341	C10orf142	B7Z368	130 aa		11.4	□□□□□ -0.58
VRK3-223	ENST00000601341		E7ENX8	843 aa		11.4	□□□□□ -0.58
VRK3-223	ENST00000601341	CACNB4	O00305	520 aa	Predicted RBP	11.4	□□□□□ -0.58
VRK3-223	ENST00000601341	CDC7	O00311	574 aa		11.4	□□□□□ -0.58
VRK3-223	ENST00000601341	NUAK1	O60285	661 aa		11.4	□□□□□ -0.58
VRK3-223	ENST00000601341	NPPA	P01160	153 aa		11.4	□□□□□ -0.58
VRK3-223	ENST00000601341	RPS17	P08708	135 aa	Known RBP	11.4	□□□□□ -0.58
VRK3-223	ENST00000601341	HOXC4	P09017	264 aa	Predicted RBP	11.4	□□□□□ -0.58
VRK3-223	ENST00000601341	HSD17B1	P14061	328 aa		11.4	□□□□□ -0.58
VRK3-223	ENST00000601341	LBP	P18428	481 aa		11.4	□□□□□ -0.58
VRK3-223	ENST00000601341	NUDT1	P36639	197 aa		11.4	□□□□□ -0.58
VRK3-223	ENST00000601341	CCR3	P51677	355 aa		11.4	□□□□□ -0.58
VRK3-223	ENST00000601341	GBX1	Q14549	363 aa		11.4	□□□□□ -0.58
VRK3-223	ENST00000601341	NUMA1	Q14980	2115 aa		11.4	□□□□□ -0.58
VRK3-223	ENST00000601341	TLR1	Q15399	786 aa		11.4	□□□□□ -0.58
VRK3-223	ENST00000601341	OR4D1	Q15615	310 aa		11.4	□□□□□ -0.58
VRK3-223	ENST00000601341	TSN	Q15631	228 aa	Known RBP	11.4	□□□□□ -0.58
VRK3-223	ENST00000601341	SYTL3	Q4VX76	610 aa		11.4	□□□□□ -0.58
VRK3-223	ENST00000601341	KIAA0895L	Q68EN5	471 aa		11.4	□□□□□ -0.58
VRK3-223	ENST00000601341	DOK6	Q6PKX4	331 aa		11.4	□□□□□ -0.58
VRK3-223	ENST00000601341	ADAMTSL2	Q86TH1	951 aa		11.4	□□□□□ -0.58
VRK3-223	ENST00000601341	SPATA24	Q86W54	205 aa		11.4	□□□□□ -0.58
VRK3-223	ENST00000601341	AQP12A	Q8IXF9	295 aa		11.4	□□□□□ -0.58
VRK3-223	ENST00000601341	LILRA2	Q8N149	483 aa		11.4	□□□□□ -0.58
VRK3-223	ENST00000601341	MIER2	Q8N344	545 aa		11.4	□□□□□ -0.58
VRK3-223	ENST00000601341	EFCAB3	Q8N7B9	438 aa		11.4	□□□□□ -0.58
VRK3-223	ENST00000601341	PTGR2	Q8N8N7	351 aa	Predicted RBP	11.4	□□□□□ -0.58
VRK3-223	ENST00000601341	PHC3	Q8NDX5	983 aa		11.4	□□□□□ -0.58
VRK3-223	ENST00000601341	EDA	Q92838	391 aa		11.4	□□□□□ -0.58
VRK3-223	ENST00000601341	FOXJ1	Q92949	421 aa		11.4	□□□□□ -0.58
VRK3-223	ENST00000601341	TMEM159	Q96B96	161 aa		11.4	□□□□□ -0.58
VRK3-223	ENST00000601341	MARK4	Q96L34	752 aa		11.4	□□□□□ -0.58
VRK3-223	ENST00000601341	LINC00615	Q96LM1	132 aa	Predicted RBP	11.4	□□□□□ -0.58
VRK3-223	ENST00000601341	NECAB3	Q96P71	396 aa	Predicted RBP	11.4	□□□□□ -0.58
VRK3-223	ENST00000601341	APOO	Q9BUR5	198 aa		11.4	□□□□□ -0.58
VRK3-223	ENST00000601341	GPR174	Q9BXC1	333 aa		11.4	□□□□□ -0.58
VRK3-223	ENST00000601341	C6orf106	Q9H6K1	298 aa	Predicted RBP	11.4	□□□□□ -0.58
VRK3-223	ENST00000601341	AKTIP	Q9H8T0	292 aa		11.4	□□□□□ -0.58
VRK3-223	ENST00000601341	RNF112	Q9ULX5	631 aa		11.4	□□□□□ -0.58
VRK3-223	ENST00000601341	DMTF1	Q9Y222	760 aa		11.4	□□□□□ -0.58
VRK3-223	ENST00000601341	COMMD3-BMI1	R4GMX3	469 aa		11.4	□□□□□ -0.58
VRK3-223	ENST00000601341	PLXNB3	Q9ULL4	1909 aa		11.4	□□□□□ -0.58
VRK3-223	ENST00000601341	IGHV1OR15-9	A0A0B4J2B8	117 aa		11.39	□□□□□ -0.59
VRK3-223	ENST00000601341	C17orf113	A0A1B0GUU1	675 aa		11.39	□□□□□ -0.59
VRK3-223	ENST00000601341	NPEPPSL1	A6NEC2	478 aa		11.39	□□□□□ -0.59
VRK3-223	ENST00000601341	LILRB5	O75023	590 aa		11.39	□□□□□ -0.59
VRK3-223	ENST00000601341	SLCO2B1	O94956	709 aa		11.39	□□□□□ -0.59
VRK3-223	ENST00000601341	PRR35	P0CG20	571 aa		11.39	□□□□□ -0.59
VRK3-223	ENST00000601341	RPL5	P46777	297 aa	Known RBP	11.39	□□□□□ -0.59
VRK3-223	ENST00000601341	PXN	P49023	591 aa	Predicted RBP	11.39	□□□□□ -0.59
VRK3-223	ENST00000601341	PPP1R3A	Q16821	1122 aa		11.39	□□□□□ -0.59
VRK3-223	ENST00000601341	ANKS6	Q68DC2	871 aa		11.39	□□□□□ -0.59
VRK3-223	ENST00000601341	PAOX	Q6QHF9	649 aa		11.39	□□□□□ -0.59
VRK3-223	ENST00000601341	PRR23B	Q6ZRT6	265 aa		11.39	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms