RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 RHBDD1Q8TEB9 315 aa13.92□□□□□ -0.18
UPF1-211ENST00000600868 SETD7Q8WTS6 366 aaKnown RBP13.92□□□□□ -0.18
UPF1-211ENST00000600868 ZNF480Q8WV37 535 aa13.92□□□□□ -0.18
UPF1-211ENST00000600868 LCN9Q8WX39 176 aa13.92□□□□□ -0.18
UPF1-211ENST00000600868 NAT6Q93015 286 aa13.92□□□□□ -0.18
UPF1-211ENST00000600868 CCDC126Q96EE4 140 aa13.92□□□□□ -0.18
UPF1-211ENST00000600868 SLC38A3Q99624 504 aa13.92□□□□□ -0.18
UPF1-211ENST00000600868 NKIRAS1Q9NYS0 192 aa13.92□□□□□ -0.18
UPF1-211ENST00000600868 OR6C2Q9NZP2 312 aa13.92□□□□□ -0.18
UPF1-211ENST00000600868 LRIT1Q9P2V4 623 aa13.92□□□□□ -0.18
UPF1-211ENST00000600868 CIDEBQ9UHD4 219 aa13.92□□□□□ -0.18
UPF1-211ENST00000600868 RAPGEFL1Q9UHV5 662 aa13.92□□□□□ -0.18
UPF1-211ENST00000600868 PLAGL1Q9UM63 463 aa13.92□□□□□ -0.18
UPF1-211ENST00000600868 ANKRD12Q6UB98 2062 aa13.92□□□□□ -0.18
UPF1-211ENST00000600868 A8MT66 165 aa13.91□□□□□ -0.18
UPF1-211ENST00000600868 TAPBPO15533 448 aa13.91□□□□□ -0.18
UPF1-211ENST00000600868 GDF9O60383 454 aa13.91□□□□□ -0.18
UPF1-211ENST00000600868 IPO13O94829 963 aaKnown RBP13.91□□□□□ -0.18
UPF1-211ENST00000600868 LDOC1O95751 146 aaPredicted RBP13.91□□□□□ -0.18
UPF1-211ENST00000600868 NR1D1P20393 614 aa13.91□□□□□ -0.18
UPF1-211ENST00000600868 SERPINB4P48594 390 aa13.91□□□□□ -0.18
UPF1-211ENST00000600868 LIMK1P53667 647 aa13.91□□□□□ -0.18
UPF1-211ENST00000600868 PNLIPRP1P54315 467 aa13.91□□□□□ -0.18
UPF1-211ENST00000600868 EPHA4P54764 986 aa13.91□□□□□ -0.18
UPF1-211ENST00000600868 SETDB1Q15047 1291 aa13.91□□□□□ -0.18
UPF1-211ENST00000600868 PLCL1Q15111 1095 aa13.91□□□□□ -0.18
UPF1-211ENST00000600868 ZXDCQ2QGD7 858 aaPredicted RBP13.91□□□□□ -0.18
UPF1-211ENST00000600868 METTL2BQ6P1Q9 378 aaKnown RBP13.91□□□□□ -0.18
UPF1-211ENST00000600868 AMIGO1Q86WK6 493 aa13.91□□□□□ -0.18
UPF1-211ENST00000600868 NAXDQ8IW45 347 aa13.91□□□□□ -0.18
UPF1-211ENST00000600868 KLHDC8AQ8IYD2 350 aa13.91□□□□□ -0.18
UPF1-211ENST00000600868 LRRC56Q8IYG6 542 aaPredicted RBP13.91□□□□□ -0.18
UPF1-211ENST00000600868 ANKRD42Q8N9B4 389 aa13.91□□□□□ -0.18
UPF1-211ENST00000600868 OR4E2Q8NGC2 313 aa13.91□□□□□ -0.18
UPF1-211ENST00000600868 OR2L8Q8NGY9 312 aa13.91□□□□□ -0.18
UPF1-211ENST00000600868 OR56A3Q8NH54 315 aa13.91□□□□□ -0.18
UPF1-211ENST00000600868 UBTD2Q8WUN7 234 aa13.91□□□□□ -0.18
UPF1-211ENST00000600868 CNDP2Q96KP4 475 aaKnown RBP13.91□□□□□ -0.18
UPF1-211ENST00000600868 TWSG1Q9GZX9 223 aa13.91□□□□□ -0.18
UPF1-211ENST00000600868 SRMSQ9H3Y6 488 aa13.91□□□□□ -0.18
UPF1-211ENST00000600868 CNOT10Q9H9A5 744 aaKnown RBP13.91□□□□□ -0.18
UPF1-211ENST00000600868 OXSMQ9NWU1 459 aa13.91□□□□□ -0.18
UPF1-211ENST00000600868 TNPO3Q9Y5L0 923 aaKnown RBP13.91□□□□□ -0.18
UPF1-211ENST00000600868 EP300Q09472 2414 aaPredicted RBP13.9□□□□□ -0.18
UPF1-211ENST00000600868 E7ENX8 843 aa13.9□□□□□ -0.18
UPF1-211ENST00000600868 BIRC5O15392 142 aa13.9□□□□□ -0.18
UPF1-211ENST00000600868 ZW10O43264 779 aa13.9□□□□□ -0.18
UPF1-211ENST00000600868 SH3BP5O60239 455 aa13.9□□□□□ -0.18
UPF1-211ENST00000600868 CBFA2T3O75081 653 aa13.9□□□□□ -0.18
UPF1-211ENST00000600868 BPGMP07738 259 aa13.9□□□□□ -0.18
UPF1-211ENST00000600868 MYF5P13349 255 aa13.9□□□□□ -0.18
UPF1-211ENST00000600868 SLC6A12P48065 614 aa13.9□□□□□ -0.18
UPF1-211ENST00000600868 PRKAA2P54646 552 aa13.9□□□□□ -0.18
UPF1-211ENST00000600868 WDR4P57081 412 aaKnown RBP13.9□□□□□ -0.18
UPF1-211ENST00000600868 DNAJB13P59910 316 aa13.9□□□□□ -0.18
UPF1-211ENST00000600868 TAP2Q03519 686 aa13.9□□□□□ -0.18
UPF1-211ENST00000600868 PCLAFQ15004 111 aa13.9□□□□□ -0.18
UPF1-211ENST00000600868 HHATQ5VTY9 493 aa13.9□□□□□ -0.18
UPF1-211ENST00000600868 GUSBP11Q6P575 273 aa13.9□□□□□ -0.18
UPF1-211ENST00000600868 KLHL35Q6PF15 583 aa13.9□□□□□ -0.18
UPF1-211ENST00000600868 RAB44Q7Z6P3 723 aaPredicted RBP13.9□□□□□ -0.18
UPF1-211ENST00000600868 ZNF761Q86XN6 746 aaPredicted RBP13.9□□□□□ -0.18
UPF1-211ENST00000600868 SYTL1Q8IYJ3 562 aa13.9□□□□□ -0.18
UPF1-211ENST00000600868 ADGRF3Q8IZF5 1079 aa13.9□□□□□ -0.18
UPF1-211ENST00000600868 PTGR2Q8N8N7 351 aaPredicted RBP13.9□□□□□ -0.18
UPF1-211ENST00000600868 LINC01555Q8NAE3 123 aa13.9□□□□□ -0.18
UPF1-211ENST00000600868 BAHD1Q8TBE0 780 aaPredicted RBP13.9□□□□□ -0.18
UPF1-211ENST00000600868 JPH3Q8WXH2 748 aaPredicted RBP13.9□□□□□ -0.18
UPF1-211ENST00000600868 SMPDL3AQ92484 453 aa13.9□□□□□ -0.18
UPF1-211ENST00000600868 PHF21BQ96EK2 531 aa13.9□□□□□ -0.18
UPF1-211ENST00000600868 IL17FQ96PD4 163 aa13.9□□□□□ -0.18
UPF1-211ENST00000600868 NRTNQ99748 197 aa13.9□□□□□ -0.18
UPF1-211ENST00000600868 TBC1D10AQ9BXI6 508 aa13.9□□□□□ -0.18
UPF1-211ENST00000600868 C1QTNF3Q9BXJ4 246 aa13.9□□□□□ -0.18
UPF1-211ENST00000600868 CD244Q9BZW8 370 aa13.9□□□□□ -0.18
UPF1-211ENST00000600868 EPB41L1Q9H4G0 881 aa13.9□□□□□ -0.18
UPF1-211ENST00000600868 XKR8Q9H6D3 395 aa13.9□□□□□ -0.18
UPF1-211ENST00000600868 WWOXQ9NZC7 414 aa13.9□□□□□ -0.18
UPF1-211ENST00000600868 FTSJ1Q9UET6 329 aa13.9□□□□□ -0.18
UPF1-211ENST00000600868 ZFHX2Q9C0A1 2572 aaPredicted RBP13.9□□□□□ -0.18
UPF1-211ENST00000600868 DNAH14Q0VDD8 3507 aa13.9□□□□□ -0.18
UPF1-211ENST00000600868 ASCC3Q8N3C0 2202 aaKnown RBP13.9□□□□□ -0.18
UPF1-211ENST00000600868 GOLGA4Q13439 2230 aaKnown RBP13.89□□□□□ -0.19
UPF1-211ENST00000600868 STK16O75716 305 aa13.89□□□□□ -0.19
UPF1-211ENST00000600868 UBXN7O94888 489 aa13.89□□□□□ -0.19
UPF1-211ENST00000600868 CKMT2P17540 419 aa13.89□□□□□ -0.19
UPF1-211ENST00000600868 IMPDH1P20839 514 aa13.89□□□□□ -0.19
UPF1-211ENST00000600868 CCND1P24385 295 aa13.89□□□□□ -0.19
UPF1-211ENST00000600868 ACP1P24666 158 aa13.89□□□□□ -0.19
UPF1-211ENST00000600868 ALDH3A1P30838 453 aa13.89□□□□□ -0.19
UPF1-211ENST00000600868 AGTR2P50052 363 aa13.89□□□□□ -0.19
UPF1-211ENST00000600868 GPLD1P80108 840 aa13.89□□□□□ -0.19
UPF1-211ENST00000600868 DAB2P98082 770 aa13.89□□□□□ -0.19
UPF1-211ENST00000600868 ASPHQ12797 758 aa13.89□□□□□ -0.19
UPF1-211ENST00000600868 NAE1Q13564 534 aa13.89□□□□□ -0.19
UPF1-211ENST00000600868 FASTKQ14296 549 aaKnown RBP13.89□□□□□ -0.19
UPF1-211ENST00000600868 PCBP2Q15366 365 aaKnown RBP eCLIP13.89□□□□□ -0.19
UPF1-211ENST00000600868 PTCHD3Q3KNS1 767 aa13.89□□□□□ -0.19
UPF1-211ENST00000600868 LIPMQ5VYY2 423 aa13.89□□□□□ -0.19
UPF1-211ENST00000600868 EFL1Q7Z2Z2 1120 aaKnown RBP13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms