RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 SLC39A10Q9ULF5 831 aa16.93■□□□□ 0.3
SHKBP1-223ENST00000600552 CAPN6Q9Y6Q1 641 aa16.93■□□□□ 0.3
SHKBP1-223ENST00000600552 PRRC2CQ9Y520 2896 aaKnown RBP16.93■□□□□ 0.3
SHKBP1-223ENST00000600552 SPTAN1Q13813 2472 aaKnown RBP16.92■□□□□ 0.3
SHKBP1-223ENST00000600552 MDC1Q14676 2089 aaKnown RBP16.92■□□□□ 0.3
SHKBP1-223ENST00000600552 TCP11X1B4DZS4 312 aa16.92■□□□□ 0.3
SHKBP1-223ENST00000600552 ALOX12BO75342 701 aa16.92■□□□□ 0.3
SHKBP1-223ENST00000600552 APRTP07741 180 aa16.92■□□□□ 0.3
SHKBP1-223ENST00000600552 ZSCAN5DPP0CG00 497 aa16.92■□□□□ 0.3
SHKBP1-223ENST00000600552 PKLRP30613 574 aa16.92■□□□□ 0.3
SHKBP1-223ENST00000600552 STIP1P31948 543 aaKnown RBP16.92■□□□□ 0.3
SHKBP1-223ENST00000600552 PPARGP37231 505 aaPredicted RBP16.92■□□□□ 0.3
SHKBP1-223ENST00000600552 SESN2P58004 480 aaPredicted RBP16.92■□□□□ 0.3
SHKBP1-223ENST00000600552 CYP2A13Q16696 494 aa16.92■□□□□ 0.3
SHKBP1-223ENST00000600552 SLC5A12Q1EHB4 618 aa16.92■□□□□ 0.3
SHKBP1-223ENST00000600552 DNAJC21Q5F1R6 531 aaKnown RBP16.92■□□□□ 0.3
SHKBP1-223ENST00000600552 PTRHD1Q6GMV3 140 aaKnown RBP16.92■□□□□ 0.3
SHKBP1-223ENST00000600552 ZNF534Q76KX8 674 aa16.92■□□□□ 0.3
SHKBP1-223ENST00000600552 MCATQ8IVS2 390 aaKnown RBP16.92■□□□□ 0.3
SHKBP1-223ENST00000600552 GALNT16Q8N428 558 aa16.92■□□□□ 0.3
SHKBP1-223ENST00000600552 METTL27Q8N6F8 245 aaPredicted RBP16.92■□□□□ 0.3
SHKBP1-223ENST00000600552 PPHLN1Q8NEY8 458 aaKnown RBP16.92■□□□□ 0.3
SHKBP1-223ENST00000600552 GSDMBQ8TAX9 411 aa16.92■□□□□ 0.3
SHKBP1-223ENST00000600552 PROKR1Q8TCW9 393 aa16.92■□□□□ 0.3
SHKBP1-223ENST00000600552 PNPLA2Q96AD5 504 aa16.92■□□□□ 0.3
SHKBP1-223ENST00000600552 HES6Q96HZ4 224 aa16.92■□□□□ 0.3
SHKBP1-223ENST00000600552 SLC29A3Q9BZD2 475 aa16.92■□□□□ 0.3
SHKBP1-223ENST00000600552 GUCA1BQ9UMX6 200 aa16.92■□□□□ 0.3
SHKBP1-223ENST00000600552 SRPK3Q9UPE1 567 aa16.92■□□□□ 0.3
SHKBP1-223ENST00000600552 TCAF1Q9Y4C2 921 aa16.92■□□□□ 0.3
SHKBP1-223ENST00000600552 ERI2A8K979 691 aaKnown RBP16.91■□□□□ 0.3
SHKBP1-223ENST00000600552 CNOT3O75175 753 aaKnown RBP16.91■□□□□ 0.3
SHKBP1-223ENST00000600552 APOA4P06727 396 aa16.91■□□□□ 0.3
SHKBP1-223ENST00000600552 RAB28P51157 221 aa16.91■□□□□ 0.3
SHKBP1-223ENST00000600552 TERF1P54274 439 aa16.91■□□□□ 0.3
SHKBP1-223ENST00000600552 CRADDP78560 199 aa16.91■□□□□ 0.3
SHKBP1-223ENST00000600552 SF1Q15637 639 aaKnown RBP16.91■□□□□ 0.3
SHKBP1-223ENST00000600552 KCTD19Q17RG1 926 aaPredicted RBP16.91■□□□□ 0.3
SHKBP1-223ENST00000600552 DCAF10Q5QP82 559 aa16.91■□□□□ 0.3
SHKBP1-223ENST00000600552 VWA5B1Q5TIE3 1220 aa16.91■□□□□ 0.3
SHKBP1-223ENST00000600552 SHISA6Q6ZSJ9 500 aa16.91■□□□□ 0.3
SHKBP1-223ENST00000600552 SLC13A5Q86YT5 568 aaPredicted RBP16.91■□□□□ 0.3
SHKBP1-223ENST00000600552 TMEM139Q8IV31 216 aa16.91■□□□□ 0.3
SHKBP1-223ENST00000600552 SLC22A15Q8IZD6 547 aa16.91■□□□□ 0.3
SHKBP1-223ENST00000600552 OR2Y1Q8NGV0 311 aa16.91■□□□□ 0.3
SHKBP1-223ENST00000600552 SSC4DQ8WTU2 575 aa16.91■□□□□ 0.3
SHKBP1-223ENST00000600552 ASZ1Q8WWH4 475 aa16.91■□□□□ 0.3
SHKBP1-223ENST00000600552 PTERQ96BW5 349 aa16.91■□□□□ 0.3
SHKBP1-223ENST00000600552 IP6K3Q96PC2 410 aa16.91■□□□□ 0.3
SHKBP1-223ENST00000600552 SMAD5Q99717 465 aaKnown RBP16.91■□□□□ 0.3
SHKBP1-223ENST00000600552 ILKAPQ9H0C8 392 aaPredicted RBP16.91■□□□□ 0.3
SHKBP1-223ENST00000600552 CHRAC1Q9NRG0 131 aa16.91■□□□□ 0.3
SHKBP1-223ENST00000600552 CATSPERZQ9NTU4 200 aa16.91■□□□□ 0.3
SHKBP1-223ENST00000600552 MARCH4Q9P2E8 410 aaPredicted RBP16.91■□□□□ 0.3
SHKBP1-223ENST00000600552 PLEKHB1Q9UF11 243 aaPredicted RBP16.91■□□□□ 0.3
SHKBP1-223ENST00000600552 ANKRD12Q6UB98 2062 aa16.91■□□□□ 0.3
SHKBP1-223ENST00000600552 H3BMH7 237 aa16.9■□□□□ 0.3
SHKBP1-223ENST00000600552 RPN2P04844 631 aa16.9■□□□□ 0.3
SHKBP1-223ENST00000600552 ALPPP05187 535 aa16.9■□□□□ 0.3
SHKBP1-223ENST00000600552 MCM3P25205 808 aa16.9■□□□□ 0.3
SHKBP1-223ENST00000600552 PSMA3P25788 255 aa16.9■□□□□ 0.3
SHKBP1-223ENST00000600552 ITGA3P26006 1051 aa16.9■□□□□ 0.3
SHKBP1-223ENST00000600552 GLRBP48167 497 aa16.9■□□□□ 0.3
SHKBP1-223ENST00000600552 TMED2Q15363 201 aa16.9■□□□□ 0.3
SHKBP1-223ENST00000600552 NR6A1Q15406 480 aa16.9■□□□□ 0.3
SHKBP1-223ENST00000600552 OASLQ15646 514 aaKnown RBP16.9■□□□□ 0.3
SHKBP1-223ENST00000600552 NLRP9Q7RTR0 991 aa16.9■□□□□ 0.3
SHKBP1-223ENST00000600552 PPP1R32Q7Z5V6 425 aa16.9■□□□□ 0.3
SHKBP1-223ENST00000600552 LINC01555Q8NAE3 123 aa16.9■□□□□ 0.3
SHKBP1-223ENST00000600552 ZDHHC19Q8WVZ1 309 aaPredicted RBP16.9■□□□□ 0.3
SHKBP1-223ENST00000600552 RANBP9Q96S59 729 aa16.9■□□□□ 0.3
SHKBP1-223ENST00000600552 CARD6Q9BX69 1037 aa16.9■□□□□ 0.3
SHKBP1-223ENST00000600552 CDC23Q9UJX2 597 aa16.9■□□□□ 0.3
SHKBP1-223ENST00000600552 RUVBL2Q9Y230 463 aaKnown RBP16.9■□□□□ 0.3
SHKBP1-223ENST00000600552 KRT87PA6NCN2 255 aa16.89■□□□□ 0.29
SHKBP1-223ENST00000600552 CD3EAPO15446 510 aaKnown RBP16.89■□□□□ 0.29
SHKBP1-223ENST00000600552 SUN1O94901 812 aa16.89■□□□□ 0.29
SHKBP1-223ENST00000600552 UMODP07911 640 aa16.89■□□□□ 0.29
SHKBP1-223ENST00000600552 CD63P08962 238 aa16.89■□□□□ 0.29
SHKBP1-223ENST00000600552 RNF224P0DH78 156 aa16.89■□□□□ 0.29
SHKBP1-223ENST00000600552 CD9P21926 228 aa16.89■□□□□ 0.29
SHKBP1-223ENST00000600552 BDKRB1P46663 353 aa16.89■□□□□ 0.29
SHKBP1-223ENST00000600552 MYBPC3Q14896 1274 aa16.89■□□□□ 0.29
SHKBP1-223ENST00000600552 TTC23LQ6PF05 361 aa16.89■□□□□ 0.29
SHKBP1-223ENST00000600552 FIGLAQ6QHK4 219 aa16.89■□□□□ 0.29
SHKBP1-223ENST00000600552 HPS6Q86YV9 775 aa16.89■□□□□ 0.29
SHKBP1-223ENST00000600552 DCUN1D3Q8IWE4 304 aa16.89■□□□□ 0.29
SHKBP1-223ENST00000600552 IQCKQ8N0W5 287 aa16.89■□□□□ 0.29
SHKBP1-223ENST00000600552 DLG3Q92796 817 aa16.89■□□□□ 0.29
SHKBP1-223ENST00000600552 SNRNP40Q96DI7 357 aaKnown RBP16.89■□□□□ 0.29
SHKBP1-223ENST00000600552 ZBTB20Q9HC78 741 aaPredicted RBP16.89■□□□□ 0.29
SHKBP1-223ENST00000600552 ATP13A2Q9NQ11 1180 aa16.89■□□□□ 0.29
SHKBP1-223ENST00000600552 INTS7Q9NVH2 962 aaKnown RBP16.89■□□□□ 0.29
SHKBP1-223ENST00000600552 ASF1BQ9NVP2 202 aa16.89■□□□□ 0.29
SHKBP1-223ENST00000600552 C5AR2Q9P296 337 aa16.89■□□□□ 0.29
SHKBP1-223ENST00000600552 TTC7AQ9ULT0 858 aaPredicted RBP16.89■□□□□ 0.29
SHKBP1-223ENST00000600552 GPC4O75487 556 aa16.88■□□□□ 0.29
SHKBP1-223ENST00000600552 NDUFS3O75489 264 aa16.88■□□□□ 0.29
SHKBP1-223ENST00000600552 IGHEP01854 428 aa16.88■□□□□ 0.29
SHKBP1-223ENST00000600552 AOAHP28039 575 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms