RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 KLHL3Q9UH77 587 aa18.72■□□□□ 0.59
UPF1-209ENST00000600310 TLK1Q9UKI8 766 aa18.72■□□□□ 0.59
UPF1-209ENST00000600310 ACOT9Q9Y305 439 aa18.72■□□□□ 0.59
UPF1-209ENST00000600310 MSRB2Q9Y3D2 182 aa18.72■□□□□ 0.59
UPF1-209ENST00000600310 KNTC1P50748 2209 aa18.72■□□□□ 0.59
UPF1-209ENST00000600310 CCDC187A0A096LP49 1063 aa18.71■□□□□ 0.59
UPF1-209ENST00000600310 A0A096LPK6 155 aa18.71■□□□□ 0.59
UPF1-209ENST00000600310 NPEPPSL1A6NEC2 478 aa18.71■□□□□ 0.59
UPF1-209ENST00000600310 TLCD2A6NGC4 264 aa18.71■□□□□ 0.59
UPF1-209ENST00000600310 A8MU76 341 aa18.71■□□□□ 0.59
UPF1-209ENST00000600310 TRIM49D1C9J1S8 452 aa18.71■□□□□ 0.59
UPF1-209ENST00000600310 CDC7O00311 574 aa18.71■□□□□ 0.59
UPF1-209ENST00000600310 SLC16A8O95907 504 aa18.71■□□□□ 0.59
UPF1-209ENST00000600310 HIST1H2AGP0C0S8 130 aaPredicted RBP18.71■□□□□ 0.59
UPF1-209ENST00000600310 CD1DP15813 335 aa18.71■□□□□ 0.59
UPF1-209ENST00000600310 HIST1H2ADP20671 130 aa18.71■□□□□ 0.59
UPF1-209ENST00000600310 PRDX3P30048 256 aaKnown RBP18.71■□□□□ 0.59
UPF1-209ENST00000600310 EIF3IQ13347 325 aaKnown RBP18.71■□□□□ 0.59
UPF1-209ENST00000600310 CAMK2BQ13554 666 aa18.71■□□□□ 0.59
UPF1-209ENST00000600310 C16orf72Q14CZ0 275 aa18.71■□□□□ 0.59
UPF1-209ENST00000600310 RASA2Q15283 850 aa18.71■□□□□ 0.59
UPF1-209ENST00000600310 TAF1BQ53T94 588 aaPredicted RBP18.71■□□□□ 0.59
UPF1-209ENST00000600310 CACHD1Q5VU97 1274 aa18.71■□□□□ 0.59
UPF1-209ENST00000600310 TIFABQ6ZNK6 161 aa18.71■□□□□ 0.59
UPF1-209ENST00000600310 ADAMTSL2Q86TH1 951 aa18.71■□□□□ 0.59
UPF1-209ENST00000600310 TBC1D1Q86TI0 1168 aaPredicted RBP18.71■□□□□ 0.59
UPF1-209ENST00000600310 TDRPQ86YL5 185 aa18.71■□□□□ 0.59
UPF1-209ENST00000600310 CARFQ8N187 725 aa18.71■□□□□ 0.59
UPF1-209ENST00000600310 SPATA6LQ8N4H0 392 aa18.71■□□□□ 0.59
UPF1-209ENST00000600310 LMNTD1Q8N9Z9 388 aa18.71■□□□□ 0.59
UPF1-209ENST00000600310 RCBTB1Q8NDN9 531 aa18.71■□□□□ 0.59
UPF1-209ENST00000600310 FLVCR1-AS1Q8TAF5 88 aa18.71■□□□□ 0.59
UPF1-209ENST00000600310 HIST1H2AHQ96KK5 128 aa18.71■□□□□ 0.59
UPF1-209ENST00000600310 CCDC138Q96M89 665 aa18.71■□□□□ 0.59
UPF1-209ENST00000600310 OR2A14Q96R47 310 aa18.71■□□□□ 0.59
UPF1-209ENST00000600310 MAP3K3Q99759 626 aa18.71■□□□□ 0.59
UPF1-209ENST00000600310 CMKLR1Q99788 373 aa18.71■□□□□ 0.59
UPF1-209ENST00000600310 HIST1H2AJQ99878 128 aa18.71■□□□□ 0.59
UPF1-209ENST00000600310 H2AFJQ9BTM1 129 aa18.71■□□□□ 0.59
UPF1-209ENST00000600310 PSMC3IPQ9P2W1 217 aaPredicted RBP18.71■□□□□ 0.59
UPF1-209ENST00000600310 CTNNAL1Q9UBT7 734 aa18.71■□□□□ 0.59
UPF1-209ENST00000600310 PTPRBP23467 1997 aa18.7■□□□□ 0.58
UPF1-209ENST00000600310 EPG5Q9HCE0 2579 aa18.7■□□□□ 0.58
UPF1-209ENST00000600310 IQANK1A0A1B0GTG1 560 aa18.7■□□□□ 0.58
UPF1-209ENST00000600310 ZNF839A8K0R7 811 aa18.7■□□□□ 0.58
UPF1-209ENST00000600310 ISM1B1AKI9 464 aa18.7■□□□□ 0.58
UPF1-209ENST00000600310 ACACBO00763 2458 aa18.7■□□□□ 0.58
UPF1-209ENST00000600310 KIF1CO43896 1103 aaKnown RBP18.7■□□□□ 0.58
UPF1-209ENST00000600310 PRICKLE3O43900 615 aaPredicted RBP18.7■□□□□ 0.58
UPF1-209ENST00000600310 LTA4HP09960 611 aaKnown RBP18.7■□□□□ 0.58
UPF1-209ENST00000600310 UGT2B7P16662 529 aa18.7■□□□□ 0.58
UPF1-209ENST00000600310 PEBP1P30086 187 aaKnown RBP18.7■□□□□ 0.58
UPF1-209ENST00000600310 GMPRP36959 345 aa18.7■□□□□ 0.58
UPF1-209ENST00000600310 PNLIPRP1P54315 467 aa18.7■□□□□ 0.58
UPF1-209ENST00000600310 AP1S2P56377 157 aa18.7■□□□□ 0.58
UPF1-209ENST00000600310 DLG1Q12959 904 aa18.7■□□□□ 0.58
UPF1-209ENST00000600310 FASTKQ14296 549 aaKnown RBP18.7■□□□□ 0.58
UPF1-209ENST00000600310 TSNQ15631 228 aaKnown RBP18.7■□□□□ 0.58
UPF1-209ENST00000600310 PPP1R3AQ16821 1122 aa18.7■□□□□ 0.58
UPF1-209ENST00000600310 RAB11FIP2Q7L804 512 aa18.7■□□□□ 0.58
UPF1-209ENST00000600310 C2orf73Q8N5S3 287 aaPredicted RBP18.7■□□□□ 0.58
UPF1-209ENST00000600310 ZNF480Q8WV37 535 aa18.7■□□□□ 0.58
UPF1-209ENST00000600310 KLHL6Q8WZ60 621 aa18.7■□□□□ 0.58
UPF1-209ENST00000600310 SLC22A18Q96BI1 424 aa18.7■□□□□ 0.58
UPF1-209ENST00000600310 ZNF768Q9H5H4 540 aaKnown RBP18.7■□□□□ 0.58
UPF1-209ENST00000600310 NMRAL1Q9HBL8 299 aa18.7■□□□□ 0.58
UPF1-209ENST00000600310 C1GALT1Q9NS00 363 aa18.7■□□□□ 0.58
UPF1-209ENST00000600310 IGSF5Q9NSI5 407 aa18.7■□□□□ 0.58
UPF1-209ENST00000600310 AKAP7Q9P0M2 348 aaPredicted RBP18.7■□□□□ 0.58
UPF1-209ENST00000600310 A0A1W2PNU3 283 aaPredicted RBP18.69■□□□□ 0.58
UPF1-209ENST00000600310 A0A1W2PPV9 198 aa18.69■□□□□ 0.58
UPF1-209ENST00000600310 RASSF9O75901 435 aa18.69■□□□□ 0.58
UPF1-209ENST00000600310 MPOP05164 745 aa18.69■□□□□ 0.58
UPF1-209ENST00000600310 IMPA1P29218 277 aa18.69■□□□□ 0.58
UPF1-209ENST00000600310 OAS2P29728 719 aaKnown RBP18.69■□□□□ 0.58
UPF1-209ENST00000600310 CSTF2P33240 577 aaKnown RBP eCLIP18.69■□□□□ 0.58
UPF1-209ENST00000600310 SLC5A12Q1EHB4 618 aa18.69■□□□□ 0.58
UPF1-209ENST00000600310 SPESP1Q6UW49 350 aa18.69■□□□□ 0.58
UPF1-209ENST00000600310 KMT5CQ86Y97 462 aa18.69■□□□□ 0.58
UPF1-209ENST00000600310 CENPLQ8N0S6 344 aaPredicted RBP18.69■□□□□ 0.58
UPF1-209ENST00000600310 AGBL5Q8NDL9 886 aa18.69■□□□□ 0.58
UPF1-209ENST00000600310 WDR36Q8NI36 951 aaKnown RBP18.69■□□□□ 0.58
UPF1-209ENST00000600310 SMPDL3AQ92484 453 aa18.69■□□□□ 0.58
UPF1-209ENST00000600310 KIAA1191Q96A73 305 aa18.69■□□□□ 0.58
UPF1-209ENST00000600310 NXNL1Q96CM4 212 aa18.69■□□□□ 0.58
UPF1-209ENST00000600310 PPM1MQ96MI6 270 aa18.69■□□□□ 0.58
UPF1-209ENST00000600310 PITPNM3Q9BZ71 974 aa18.69■□□□□ 0.58
UPF1-209ENST00000600310 UNKQ9C0B0 810 aaKnown RBP18.69■□□□□ 0.58
UPF1-209ENST00000600310 NRSN2Q9GZP1 204 aa18.69■□□□□ 0.58
UPF1-209ENST00000600310 STOX2Q9P2F5 926 aaPredicted RBP18.69■□□□□ 0.58
UPF1-209ENST00000600310 ANGPTL2Q9UKU9 493 aa18.69■□□□□ 0.58
UPF1-209ENST00000600310 OARD1Q9Y530 152 aa18.69■□□□□ 0.58
UPF1-209ENST00000600310 IGHV5-51A0A0C4DH38 117 aa18.68■□□□□ 0.58
UPF1-209ENST00000600310 CCDC151A5D8V7 595 aa18.68■□□□□ 0.58
UPF1-209ENST00000600310 PABPN1LA6NDY0 278 aaKnown RBP18.68■□□□□ 0.58
UPF1-209ENST00000600310 E7ENX8 843 aa18.68■□□□□ 0.58
UPF1-209ENST00000600310 CTIFO43310 598 aaKnown RBP18.68■□□□□ 0.58
UPF1-209ENST00000600310 CDH3P22223 829 aa18.68■□□□□ 0.58
UPF1-209ENST00000600310 LSSP48449 732 aa18.68■□□□□ 0.58
UPF1-209ENST00000600310 CDKL1Q00532 357 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms