RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 SORBS2O94875 1100 aaKnown RBP9.43□□□□□ -0.9
VRK3-216ENST00000599342 ALPPP05187 535 aa9.43□□□□□ -0.9
VRK3-216ENST00000599342 ALAS2P22557 587 aa9.43□□□□□ -0.9
VRK3-216ENST00000599342 AOAHP28039 575 aa9.43□□□□□ -0.9
VRK3-216ENST00000599342 PEBP1P30086 187 aaKnown RBP9.43□□□□□ -0.9
VRK3-216ENST00000599342 RPL22P35268 128 aaKnown RBP9.43□□□□□ -0.9
VRK3-216ENST00000599342 GABRA4P48169 554 aa9.43□□□□□ -0.9
VRK3-216ENST00000599342 ARSFP54793 590 aa9.43□□□□□ -0.9
VRK3-216ENST00000599342 CRADDP78560 199 aa9.43□□□□□ -0.9
VRK3-216ENST00000599342 RAPSNQ13702 412 aa9.43□□□□□ -0.9
VRK3-216ENST00000599342 SLC9A5Q14940 896 aa9.43□□□□□ -0.9
VRK3-216ENST00000599342 SF1Q15637 639 aaKnown RBP9.43□□□□□ -0.9
VRK3-216ENST00000599342 CYP2A13Q16696 494 aa9.43□□□□□ -0.9
VRK3-216ENST00000599342 ZC3H12BQ5HYM0 836 aaKnown RBP9.43□□□□□ -0.9
VRK3-216ENST00000599342 VWA5B1Q5TIE3 1220 aa9.43□□□□□ -0.9
VRK3-216ENST00000599342 DRICH1Q6PGQ1 229 aaPredicted RBP9.43□□□□□ -0.9
VRK3-216ENST00000599342 OTOAQ7RTW8 1153 aa9.43□□□□□ -0.9
VRK3-216ENST00000599342 LRRC6Q86X45 466 aa9.43□□□□□ -0.9
VRK3-216ENST00000599342 FAM20CQ8IXL6 584 aa9.43□□□□□ -0.9
VRK3-216ENST00000599342 KRT222Q8N1A0 295 aa9.43□□□□□ -0.9
VRK3-216ENST00000599342 MPP5Q8N3R9 675 aa9.43□□□□□ -0.9
VRK3-216ENST00000599342 DNAJC22Q8N4W6 341 aa9.43□□□□□ -0.9
VRK3-216ENST00000599342 C2orf73Q8N5S3 287 aaPredicted RBP9.43□□□□□ -0.9
VRK3-216ENST00000599342 GALNT11Q8NCW6 608 aa9.43□□□□□ -0.9
VRK3-216ENST00000599342 OR2Y1Q8NGV0 311 aa9.43□□□□□ -0.9
VRK3-216ENST00000599342 OR2L8Q8NGY9 312 aa9.43□□□□□ -0.9
VRK3-216ENST00000599342 FOPNLQ96NB1 174 aa9.43□□□□□ -0.9
VRK3-216ENST00000599342 IL17FQ96PD4 163 aa9.43□□□□□ -0.9
VRK3-216ENST00000599342 SMAD5Q99717 465 aaKnown RBP9.43□□□□□ -0.9
VRK3-216ENST00000599342 LZTFL1Q9NQ48 299 aa9.43□□□□□ -0.9
VRK3-216ENST00000599342 EURLQ9NYK6 297 aa9.43□□□□□ -0.9
VRK3-216ENST00000599342 BFARQ9NZS9 450 aa9.43□□□□□ -0.9
VRK3-216ENST00000599342 MARCH4Q9P2E8 410 aaPredicted RBP9.43□□□□□ -0.9
VRK3-216ENST00000599342 CIDEBQ9UHD4 219 aa9.43□□□□□ -0.9
VRK3-216ENST00000599342 CDYLQ9Y232 598 aa9.43□□□□□ -0.9
VRK3-216ENST00000599342 PIKFYVEQ9Y2I7 2098 aa9.43□□□□□ -0.9
VRK3-216ENST00000599342 A0A1B0GX78 115 aa9.42□□□□□ -0.9
VRK3-216ENST00000599342 CLEC18AA5D8T8 446 aa9.42□□□□□ -0.9
VRK3-216ENST00000599342 CYSRT1A8MQ03 144 aa9.42□□□□□ -0.9
VRK3-216ENST00000599342 RASGRF2O14827 1237 aa9.42□□□□□ -0.9
VRK3-216ENST00000599342 SLCO2B1O94956 709 aa9.42□□□□□ -0.9
VRK3-216ENST00000599342 FGGP02679 453 aa9.42□□□□□ -0.9
VRK3-216ENST00000599342 CCDC175P0C221 793 aa9.42□□□□□ -0.9
VRK3-216ENST00000599342 PIM1P11309 404 aaPredicted RBP9.42□□□□□ -0.9
VRK3-216ENST00000599342 GNLYP22749 145 aa9.42□□□□□ -0.9
VRK3-216ENST00000599342 RPS3P23396 243 aaKnown RBP eCLIP9.42□□□□□ -0.9
VRK3-216ENST00000599342 VARSP26640 1264 aaKnown RBP9.42□□□□□ -0.9
VRK3-216ENST00000599342 UQCRFS1P47985 274 aa9.42□□□□□ -0.9
VRK3-216ENST00000599342 NPY2RP49146 381 aa9.42□□□□□ -0.9
VRK3-216ENST00000599342 EIF3BP55884 814 aaKnown RBP9.42□□□□□ -0.9
VRK3-216ENST00000599342 SRSF1Q07955 248 aaKnown RBP eCLIP9.42□□□□□ -0.9
VRK3-216ENST00000599342 SIX1Q15475 284 aaPredicted RBP9.42□□□□□ -0.9
VRK3-216ENST00000599342 NKAIN1Q4KMZ8 207 aa9.42□□□□□ -0.9
VRK3-216ENST00000599342 FHL5Q5TD97 284 aa9.42□□□□□ -0.9
VRK3-216ENST00000599342 MRNIPQ6NTE8 343 aa9.42□□□□□ -0.9
VRK3-216ENST00000599342 JMJD6Q6NYC1 403 aaPredicted RBP9.42□□□□□ -0.9
VRK3-216ENST00000599342 CLEC18BQ6UXF7 455 aa9.42□□□□□ -0.9
VRK3-216ENST00000599342 TTLL10Q6ZVT0 673 aa9.42□□□□□ -0.9
VRK3-216ENST00000599342 SDCCAG8Q86SQ7 713 aaPredicted RBP9.42□□□□□ -0.9
VRK3-216ENST00000599342 MCATQ8IVS2 390 aaKnown RBP9.42□□□□□ -0.9
VRK3-216ENST00000599342 TTC29Q8NA56 475 aaPredicted RBP9.42□□□□□ -0.9
VRK3-216ENST00000599342 LINC01555Q8NAE3 123 aa9.42□□□□□ -0.9
VRK3-216ENST00000599342 CLEC18CQ8NCF0 446 aa9.42□□□□□ -0.9
VRK3-216ENST00000599342 MAGEC3Q8TD91 643 aa9.42□□□□□ -0.9
VRK3-216ENST00000599342 PNPLA2Q96AD5 504 aa9.42□□□□□ -0.9
VRK3-216ENST00000599342 RAD51AP1Q96B01 352 aa9.42□□□□□ -0.9
VRK3-216ENST00000599342 PTERQ96BW5 349 aa9.42□□□□□ -0.9
VRK3-216ENST00000599342 MENTQ9BUN1 341 aa9.42□□□□□ -0.9
VRK3-216ENST00000599342 MFRPQ9BY79 579 aa9.42□□□□□ -0.9
VRK3-216ENST00000599342 SLC29A3Q9BZD2 475 aa9.42□□□□□ -0.9
VRK3-216ENST00000599342 TREX1Q9NSU2 369 aa9.42□□□□□ -0.9
VRK3-216ENST00000599342 LUZP4Q9P127 313 aa9.42□□□□□ -0.9
VRK3-216ENST00000599342 C5AR2Q9P296 337 aa9.42□□□□□ -0.9
VRK3-216ENST00000599342 TTC7AQ9ULT0 858 aaPredicted RBP9.42□□□□□ -0.9
VRK3-216ENST00000599342 DRG1Q9Y295 367 aaKnown RBP9.42□□□□□ -0.9
VRK3-216ENST00000599342 KLHL20Q9Y2M5 609 aa9.42□□□□□ -0.9
VRK3-216ENST00000599342 MAP4K5Q9Y4K4 846 aa9.42□□□□□ -0.9
VRK3-216ENST00000599342 FAM169AQ9Y6X4 670 aa9.42□□□□□ -0.9
VRK3-216ENST00000599342 TNRC6AQ8NDV7 1962 aaKnown RBP9.41□□□□□ -0.9
VRK3-216ENST00000599342 IPO13O94829 963 aaKnown RBP9.41□□□□□ -0.9
VRK3-216ENST00000599342 AGFG2O95081 481 aa9.41□□□□□ -0.9
VRK3-216ENST00000599342 FKBP9O95302 570 aa9.41□□□□□ -0.9
VRK3-216ENST00000599342 CTSBP07858 339 aa9.41□□□□□ -0.9
VRK3-216ENST00000599342 GP1BBP13224 206 aa9.41□□□□□ -0.9
VRK3-216ENST00000599342 PAMP19021 973 aa9.41□□□□□ -0.9
VRK3-216ENST00000599342 MGAT1P26572 445 aa9.41□□□□□ -0.9
VRK3-216ENST00000599342 NMBRP28336 390 aa9.41□□□□□ -0.9
VRK3-216ENST00000599342 CCNFP41002 786 aa9.41□□□□□ -0.9
VRK3-216ENST00000599342 BDKRB1P46663 353 aa9.41□□□□□ -0.9
VRK3-216ENST00000599342 SARNPP82979 210 aaKnown RBP9.41□□□□□ -0.9
VRK3-216ENST00000599342 CDK16Q00536 496 aa9.41□□□□□ -0.9
VRK3-216ENST00000599342 GRM7Q14831 915 aa9.41□□□□□ -0.9
VRK3-216ENST00000599342 MYBPC3Q14896 1274 aa9.41□□□□□ -0.9
VRK3-216ENST00000599342 INPP5JQ15735 1006 aaPredicted RBP9.41□□□□□ -0.9
VRK3-216ENST00000599342 TCTE1Q5JU00 501 aa9.41□□□□□ -0.9
VRK3-216ENST00000599342 DCAF10Q5QP82 559 aa9.41□□□□□ -0.9
VRK3-216ENST00000599342 RNF187Q5TA31 235 aaPredicted RBP9.41□□□□□ -0.9
VRK3-216ENST00000599342 YOD1Q5VVQ6 348 aaPredicted RBP9.41□□□□□ -0.9
VRK3-216ENST00000599342 SLC6A19Q695T7 634 aa9.41□□□□□ -0.9
VRK3-216ENST00000599342 MRPL14Q6P1L8 145 aaKnown RBP9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms