RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 ARMC6Q6NXE6 501 aa13.73□□□□□ -0.21
SHKBP1-217ENST00000598558 SPESP1Q6UW49 350 aa13.73□□□□□ -0.21
SHKBP1-217ENST00000598558 MBOAT1Q6ZNC8 495 aa13.73□□□□□ -0.21
SHKBP1-217ENST00000598558 UBE2R2Q712K3 238 aaPredicted RBP13.73□□□□□ -0.21
SHKBP1-217ENST00000598558 PROSER1Q86XN7 944 aa13.73□□□□□ -0.21
SHKBP1-217ENST00000598558 LRRC56Q8IYG6 542 aaPredicted RBP13.73□□□□□ -0.21
SHKBP1-217ENST00000598558 FBXO15Q8NCQ5 510 aaPredicted RBP13.73□□□□□ -0.21
SHKBP1-217ENST00000598558 PPFIBP2Q8ND30 876 aa13.73□□□□□ -0.21
SHKBP1-217ENST00000598558 CD180Q99467 661 aa13.73□□□□□ -0.21
SHKBP1-217ENST00000598558 SPRY4Q9C004 299 aa13.73□□□□□ -0.21
SHKBP1-217ENST00000598558 UNKQ9C0B0 810 aaKnown RBP13.73□□□□□ -0.21
SHKBP1-217ENST00000598558 TSPYL1Q9H0U9 437 aa13.73□□□□□ -0.21
SHKBP1-217ENST00000598558 FAM60AQ9NP50 221 aa13.73□□□□□ -0.21
SHKBP1-217ENST00000598558 SLC39A1Q9NY26 324 aa13.73□□□□□ -0.21
SHKBP1-217ENST00000598558 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.73□□□□□ -0.21
SHKBP1-217ENST00000598558 B3GALT1Q9Y5Z6 326 aa13.73□□□□□ -0.21
SHKBP1-217ENST00000598558 V9GYY5 206 aaPredicted RBP13.73□□□□□ -0.21
SHKBP1-217ENST00000598558 KIF26BQ2KJY2 2108 aa13.73□□□□□ -0.21
SHKBP1-217ENST00000598558 ISM1B1AKI9 464 aa13.72□□□□□ -0.21
SHKBP1-217ENST00000598558 CDC7O00311 574 aa13.72□□□□□ -0.21
SHKBP1-217ENST00000598558 NVLO15381 856 aaKnown RBP13.72□□□□□ -0.21
SHKBP1-217ENST00000598558 SLU7O95391 586 aaKnown RBP13.72□□□□□ -0.21
SHKBP1-217ENST00000598558 SLC16A8O95907 504 aa13.72□□□□□ -0.21
SHKBP1-217ENST00000598558 CATP04040 527 aaKnown RBP13.72□□□□□ -0.21
SHKBP1-217ENST00000598558 CTSBP07858 339 aa13.72□□□□□ -0.21
SHKBP1-217ENST00000598558 EBLN1P0CF75 366 aa13.72□□□□□ -0.21
SHKBP1-217ENST00000598558 ZNF37AP17032 561 aaPredicted RBP13.72□□□□□ -0.21
SHKBP1-217ENST00000598558 CDH3P22223 829 aa13.72□□□□□ -0.21
SHKBP1-217ENST00000598558 GCAP28676 217 aa13.72□□□□□ -0.21
SHKBP1-217ENST00000598558 SPRP35270 261 aaPredicted RBP13.72□□□□□ -0.21
SHKBP1-217ENST00000598558 CSRP3P50461 194 aa13.72□□□□□ -0.21
SHKBP1-217ENST00000598558 POU4F1Q01851 419 aa13.72□□□□□ -0.21
SHKBP1-217ENST00000598558 DLG1Q12959 904 aa13.72□□□□□ -0.21
SHKBP1-217ENST00000598558 BMPR2Q13873 1038 aa13.72□□□□□ -0.21
SHKBP1-217ENST00000598558 USP10Q14694 798 aaKnown RBP13.72□□□□□ -0.21
SHKBP1-217ENST00000598558 ZKSCAN8Q15776 578 aaPredicted RBP13.72□□□□□ -0.21
SHKBP1-217ENST00000598558 TTC23LQ6PF05 361 aa13.72□□□□□ -0.21
SHKBP1-217ENST00000598558 CMC1Q7Z7K0 106 aa13.72□□□□□ -0.21
SHKBP1-217ENST00000598558 ZFAND4Q86XD8 727 aa13.72□□□□□ -0.21
SHKBP1-217ENST00000598558 LSMEM2Q8N112 164 aa13.72□□□□□ -0.21
SHKBP1-217ENST00000598558 D2HGDHQ8N465 521 aa13.72□□□□□ -0.21
SHKBP1-217ENST00000598558 HMGCLL1Q8TB92 370 aa13.72□□□□□ -0.21
SHKBP1-217ENST00000598558 ZNF480Q8WV37 535 aa13.72□□□□□ -0.21
SHKBP1-217ENST00000598558 UBXN4Q92575 508 aa13.72□□□□□ -0.21
SHKBP1-217ENST00000598558 FGF11Q92914 225 aa13.72□□□□□ -0.21
SHKBP1-217ENST00000598558 PDLIM5Q96HC4 596 aaKnown RBP13.72□□□□□ -0.21
SHKBP1-217ENST00000598558 ZNF578Q96N58 590 aaPredicted RBP13.72□□□□□ -0.21
SHKBP1-217ENST00000598558 TAAR9Q96RI9 348 aa13.72□□□□□ -0.21
SHKBP1-217ENST00000598558 CYTH2Q99418 400 aa13.72□□□□□ -0.21
SHKBP1-217ENST00000598558 SLC12A9Q9BXP2 914 aa13.72□□□□□ -0.21
SHKBP1-217ENST00000598558 FBXO8Q9NRD0 319 aa13.72□□□□□ -0.21
SHKBP1-217ENST00000598558 C1GALT1Q9NS00 363 aa13.72□□□□□ -0.21
SHKBP1-217ENST00000598558 ZMIZ1Q9ULJ6 1067 aa13.72□□□□□ -0.21
SHKBP1-217ENST00000598558 PCDHGA7Q9Y5G6 932 aa13.72□□□□□ -0.21
SHKBP1-217ENST00000598558 E7ENX8 843 aa13.71□□□□□ -0.21
SHKBP1-217ENST00000598558 RIPK2O43353 540 aa13.71□□□□□ -0.21
SHKBP1-217ENST00000598558 ZBTB14O43829 449 aa13.71□□□□□ -0.21
SHKBP1-217ENST00000598558 NRP2O60462 931 aa13.71□□□□□ -0.21
SHKBP1-217ENST00000598558 TIAF1O95411 115 aa13.71□□□□□ -0.21
SHKBP1-217ENST00000598558 IMPA1P29218 277 aa13.71□□□□□ -0.21
SHKBP1-217ENST00000598558 GABRA4P48169 554 aa13.71□□□□□ -0.21
SHKBP1-217ENST00000598558 RGS4P49798 205 aa13.71□□□□□ -0.21
SHKBP1-217ENST00000598558 PMS2P54278 862 aa13.71□□□□□ -0.21
SHKBP1-217ENST00000598558 ERVPABLB-1P60509 514 aa13.71□□□□□ -0.21
SHKBP1-217ENST00000598558 VSNL1P62760 191 aa13.71□□□□□ -0.21
SHKBP1-217ENST00000598558 TAP2Q03519 686 aa13.71□□□□□ -0.21
SHKBP1-217ENST00000598558 NAB1Q13506 487 aa13.71□□□□□ -0.21
SHKBP1-217ENST00000598558 COL9A2Q14055 689 aaPredicted RBP13.71□□□□□ -0.21
SHKBP1-217ENST00000598558 NAA30Q147X3 362 aaPredicted RBP13.71□□□□□ -0.21
SHKBP1-217ENST00000598558 KIR2DS3Q14952 304 aa13.71□□□□□ -0.21
SHKBP1-217ENST00000598558 SLMAPQ14BN4 828 aa13.71□□□□□ -0.21
SHKBP1-217ENST00000598558 TGIF1Q15583 401 aa13.71□□□□□ -0.21
SHKBP1-217ENST00000598558 GPR19Q15760 415 aa13.71□□□□□ -0.21
SHKBP1-217ENST00000598558 SLC5A12Q1EHB4 618 aa13.71□□□□□ -0.21
SHKBP1-217ENST00000598558 KIAA1614Q5VZ46 1190 aa13.71□□□□□ -0.21
SHKBP1-217ENST00000598558 SUSD1Q6UWL2 747 aa13.71□□□□□ -0.21
SHKBP1-217ENST00000598558 CEP128Q6ZU80 1094 aa13.71□□□□□ -0.21
SHKBP1-217ENST00000598558 MYO1HQ8N1T3 1032 aa13.71□□□□□ -0.21
SHKBP1-217ENST00000598558 OR2A1Q8NGT9 310 aa13.71□□□□□ -0.21
SHKBP1-217ENST00000598558 SLC44A1Q8WWI5 657 aa13.71□□□□□ -0.21
SHKBP1-217ENST00000598558 OR6C1Q96RD1 312 aa13.71□□□□□ -0.21
SHKBP1-217ENST00000598558 AKAP7Q9P0M2 348 aaPredicted RBP13.71□□□□□ -0.21
SHKBP1-217ENST00000598558 SPATA7Q9P0W8 599 aa13.71□□□□□ -0.21
SHKBP1-217ENST00000598558 TXNDC16Q9P2K2 825 aa13.71□□□□□ -0.21
SHKBP1-217ENST00000598558 BTRCQ9Y297 605 aa13.71□□□□□ -0.21
SHKBP1-217ENST00000598558 PCDHGA3Q9Y5H0 932 aa13.71□□□□□ -0.21
SHKBP1-217ENST00000598558 FREM2Q5SZK8 3169 aa13.71□□□□□ -0.21
SHKBP1-217ENST00000598558 IGF2RP11717 2491 aa13.7□□□□□ -0.22
SHKBP1-217ENST00000598558 NPEPPSL1A6NEC2 478 aa13.7□□□□□ -0.22
SHKBP1-217ENST00000598558 MATN2O00339 956 aa13.7□□□□□ -0.22
SHKBP1-217ENST00000598558 ZBTB11O95625 1053 aaPredicted RBP13.7□□□□□ -0.22
SHKBP1-217ENST00000598558 SYF2O95926 243 aaKnown RBP13.7□□□□□ -0.22
SHKBP1-217ENST00000598558 ZNF28P17035 718 aa13.7□□□□□ -0.22
SHKBP1-217ENST00000598558 TNFRSF8P28908 595 aa13.7□□□□□ -0.22
SHKBP1-217ENST00000598558 PHBP35232 272 aa13.7□□□□□ -0.22
SHKBP1-217ENST00000598558 KCNC1P48547 511 aa13.7□□□□□ -0.22
SHKBP1-217ENST00000598558 PNLIPRP1P54315 467 aa13.7□□□□□ -0.22
SHKBP1-217ENST00000598558 HSD11B2P80365 405 aa13.7□□□□□ -0.22
SHKBP1-217ENST00000598558 FOXM1Q08050 763 aa13.7□□□□□ -0.22
SHKBP1-217ENST00000598558 SLC29A2Q14542 456 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms