RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 ADAMTSL2Q86TH1 951 aa11.75□□□□□ -0.53
SHKBP1-213ENST00000597325 SPATS2Q86XZ4 545 aaKnown RBP11.75□□□□□ -0.53
SHKBP1-213ENST00000597325 SLC22A15Q8IZD6 547 aa11.75□□□□□ -0.53
SHKBP1-213ENST00000597325 SPATA6LQ8N4H0 392 aa11.75□□□□□ -0.53
SHKBP1-213ENST00000597325 ARFGAP2Q8N6H7 521 aa11.75□□□□□ -0.53
SHKBP1-213ENST00000597325 ANKRD42Q8N9B4 389 aa11.75□□□□□ -0.53
SHKBP1-213ENST00000597325 CCDC63Q8NA47 563 aa11.75□□□□□ -0.53
SHKBP1-213ENST00000597325 ANKRD49Q8WVL7 239 aa11.75□□□□□ -0.53
SHKBP1-213ENST00000597325 NXNL1Q96CM4 212 aa11.75□□□□□ -0.53
SHKBP1-213ENST00000597325 PDLIM5Q96HC4 596 aaKnown RBP11.75□□□□□ -0.53
SHKBP1-213ENST00000597325 UNKQ9C0B0 810 aaKnown RBP11.75□□□□□ -0.53
SHKBP1-213ENST00000597325 TMEM168Q9H0V1 697 aa11.75□□□□□ -0.53
SHKBP1-213ENST00000597325 DPEP2Q9H4A9 486 aa11.75□□□□□ -0.53
SHKBP1-213ENST00000597325 THSD1Q9NS62 852 aa11.75□□□□□ -0.53
SHKBP1-213ENST00000597325 SPASTQ9UBP0 616 aa11.75□□□□□ -0.53
SHKBP1-213ENST00000597325 SLC23A2Q9UGH3 650 aa11.75□□□□□ -0.53
SHKBP1-213ENST00000597325 MID2Q9UJV3 735 aa11.75□□□□□ -0.53
SHKBP1-213ENST00000597325 TYROBPO43914 113 aa11.74□□□□□ -0.53
SHKBP1-213ENST00000597325 SNX2O60749 519 aa11.74□□□□□ -0.53
SHKBP1-213ENST00000597325 TSPAN12O95859 305 aa11.74□□□□□ -0.53
SHKBP1-213ENST00000597325 CSF2P04141 144 aa11.74□□□□□ -0.53
SHKBP1-213ENST00000597325 RPN2P04844 631 aa11.74□□□□□ -0.53
SHKBP1-213ENST00000597325 C8GP07360 202 aa11.74□□□□□ -0.53
SHKBP1-213ENST00000597325 CD1DP15813 335 aa11.74□□□□□ -0.53
SHKBP1-213ENST00000597325 EPHA8P29322 1005 aaPredicted RBP11.74□□□□□ -0.53
SHKBP1-213ENST00000597325 OAS2P29728 719 aaKnown RBP11.74□□□□□ -0.53
SHKBP1-213ENST00000597325 HALP42357 657 aa11.74□□□□□ -0.53
SHKBP1-213ENST00000597325 ARRB1P49407 418 aaPredicted RBP11.74□□□□□ -0.53
SHKBP1-213ENST00000597325 CLCNKAP51800 687 aa11.74□□□□□ -0.53
SHKBP1-213ENST00000597325 HNRNPKP61978 463 aaKnown RBP eCLIP11.74□□□□□ -0.53
SHKBP1-213ENST00000597325 CTBSQ01459 385 aa11.74□□□□□ -0.53
SHKBP1-213ENST00000597325 DLG1Q12959 904 aa11.74□□□□□ -0.53
SHKBP1-213ENST00000597325 SP140Q13342 867 aa11.74□□□□□ -0.53
SHKBP1-213ENST00000597325 ELOCQ15369 112 aa11.74□□□□□ -0.53
SHKBP1-213ENST00000597325 ZNF658BQ4V348 819 aaPredicted RBP11.74□□□□□ -0.53
SHKBP1-213ENST00000597325 PRRT3Q5FWE3 981 aa11.74□□□□□ -0.53
SHKBP1-213ENST00000597325 METRNLQ641Q3 311 aa11.74□□□□□ -0.53
SHKBP1-213ENST00000597325 SLC30A9Q6PML9 568 aa11.74□□□□□ -0.53
SHKBP1-213ENST00000597325 LVRNQ6Q4G3 990 aa11.74□□□□□ -0.53
SHKBP1-213ENST00000597325 TAF8Q7Z7C8 310 aa11.74□□□□□ -0.53
SHKBP1-213ENST00000597325 VRK3Q8IV63 474 aa11.74□□□□□ -0.53
SHKBP1-213ENST00000597325 PLD6Q8N2A8 252 aaKnown RBP11.74□□□□□ -0.53
SHKBP1-213ENST00000597325 FSTL5Q8N475 847 aaPredicted RBP11.74□□□□□ -0.53
SHKBP1-213ENST00000597325 LILRA3Q8N6C8 439 aaPredicted RBP11.74□□□□□ -0.53
SHKBP1-213ENST00000597325 FAM76AQ8TAV0 307 aa11.74□□□□□ -0.53
SHKBP1-213ENST00000597325 TCP10LQ8TDR4 215 aa11.74□□□□□ -0.53
SHKBP1-213ENST00000597325 EXTL1Q92935 676 aa11.74□□□□□ -0.53
SHKBP1-213ENST00000597325 WWP1Q9H0M0 922 aa11.74□□□□□ -0.53
SHKBP1-213ENST00000597325 EPN3Q9H201 632 aa11.74□□□□□ -0.53
SHKBP1-213ENST00000597325 MRPL46Q9H2W6 279 aaKnown RBP11.74□□□□□ -0.53
SHKBP1-213ENST00000597325 TFB2MQ9H5Q4 396 aaKnown RBP11.74□□□□□ -0.53
SHKBP1-213ENST00000597325 ALG9Q9H6U8 611 aa11.74□□□□□ -0.53
SHKBP1-213ENST00000597325 CNOT10Q9H9A5 744 aaKnown RBP11.74□□□□□ -0.53
SHKBP1-213ENST00000597325 ERVMER34-1Q9H9K5 563 aa11.74□□□□□ -0.53
SHKBP1-213ENST00000597325 XPR1Q9UBH6 696 aa11.74□□□□□ -0.53
SHKBP1-213ENST00000597325 PLEKHB1Q9UF11 243 aaPredicted RBP11.74□□□□□ -0.53
SHKBP1-213ENST00000597325 RNF112Q9ULX5 631 aa11.74□□□□□ -0.53
SHKBP1-213ENST00000597325 DOLKQ9UPQ8 538 aa11.74□□□□□ -0.53
SHKBP1-213ENST00000597325 CDYLQ9Y232 598 aa11.74□□□□□ -0.53
SHKBP1-213ENST00000597325 PLEKHM1Q9Y4G2 1056 aa11.74□□□□□ -0.53
SHKBP1-213ENST00000597325 A0A1W2PNU3 283 aaPredicted RBP11.73□□□□□ -0.53
SHKBP1-213ENST00000597325 SYCE1LA8MT33 242 aa11.73□□□□□ -0.53
SHKBP1-213ENST00000597325 SLC16A5O15375 505 aa11.73□□□□□ -0.53
SHKBP1-213ENST00000597325 ZBTB14O43829 449 aa11.73□□□□□ -0.53
SHKBP1-213ENST00000597325 KERAO60938 352 aa11.73□□□□□ -0.53
SHKBP1-213ENST00000597325 CATP04040 527 aaKnown RBP11.73□□□□□ -0.53
SHKBP1-213ENST00000597325 S100BP04271 92 aaPredicted RBP11.73□□□□□ -0.53
SHKBP1-213ENST00000597325 ITGB2P05107 769 aa11.73□□□□□ -0.53
SHKBP1-213ENST00000597325 FAM87AP0C7U9 286 aa11.73□□□□□ -0.53
SHKBP1-213ENST00000597325 SLC2A4P14672 509 aa11.73□□□□□ -0.53
SHKBP1-213ENST00000597325 TAC1P20366 129 aa11.73□□□□□ -0.53
SHKBP1-213ENST00000597325 CYP2A7P20853 494 aa11.73□□□□□ -0.53
SHKBP1-213ENST00000597325 AK4P27144 223 aaPredicted RBP11.73□□□□□ -0.53
SHKBP1-213ENST00000597325 MAP4P27816 1152 aaKnown RBP11.73□□□□□ -0.53
SHKBP1-213ENST00000597325 RPA3P35244 121 aaPredicted RBP11.73□□□□□ -0.53
SHKBP1-213ENST00000597325 SLC18A1P54219 525 aa11.73□□□□□ -0.53
SHKBP1-213ENST00000597325 E2F1Q01094 437 aa11.73□□□□□ -0.53
SHKBP1-213ENST00000597325 ABRQ12979 859 aa11.73□□□□□ -0.53
SHKBP1-213ENST00000597325 BNIP3Q12983 259 aa11.73□□□□□ -0.53
SHKBP1-213ENST00000597325 CLN3Q13286 438 aa11.73□□□□□ -0.53
SHKBP1-213ENST00000597325 TSNQ15631 228 aaKnown RBP11.73□□□□□ -0.53
SHKBP1-213ENST00000597325 IGFBP7Q16270 282 aa11.73□□□□□ -0.53
SHKBP1-213ENST00000597325 PROX2Q3B8N5 592 aa11.73□□□□□ -0.53
SHKBP1-213ENST00000597325 TECRLQ5HYJ1 363 aa11.73□□□□□ -0.53
SHKBP1-213ENST00000597325 HHATQ5VTY9 493 aa11.73□□□□□ -0.53
SHKBP1-213ENST00000597325 UNC5DQ6UXZ4 953 aa11.73□□□□□ -0.53
SHKBP1-213ENST00000597325 CDHR3Q6ZTQ4 885 aa11.73□□□□□ -0.53
SHKBP1-213ENST00000597325 UBE2R2Q712K3 238 aaPredicted RBP11.73□□□□□ -0.53
SHKBP1-213ENST00000597325 FBN3Q75N90 2809 aa11.73□□□□□ -0.53
SHKBP1-213ENST00000597325 MTERF4Q7Z6M4 381 aaKnown RBP11.73□□□□□ -0.53
SHKBP1-213ENST00000597325 GKN2Q86XP6 184 aa11.73□□□□□ -0.53
SHKBP1-213ENST00000597325 CFAP61Q8NHU2 1237 aa11.73□□□□□ -0.53
SHKBP1-213ENST00000597325 STAG3L4Q8TBR4 150 aa11.73□□□□□ -0.53
SHKBP1-213ENST00000597325 RDH11Q8TC12 318 aa11.73□□□□□ -0.53
SHKBP1-213ENST00000597325 GPBAR1Q8TDU6 330 aa11.73□□□□□ -0.53
SHKBP1-213ENST00000597325 SREK1Q8WXA9 508 aaKnown RBP11.73□□□□□ -0.53
SHKBP1-213ENST00000597325 EXT2Q93063 718 aa11.73□□□□□ -0.53
SHKBP1-213ENST00000597325 KIAA1191Q96A73 305 aa11.73□□□□□ -0.53
SHKBP1-213ENST00000597325 FAM111AQ96PZ2 611 aa11.73□□□□□ -0.53
SHKBP1-213ENST00000597325 MRPL57Q9BQC6 102 aaKnown RBP11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms