RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 ZNF501Q96CX3 271 aaPredicted RBP10.77□□□□□ -0.69
VRK3-210ENST00000596121 PKP4Q99569 1192 aa10.77□□□□□ -0.69
VRK3-210ENST00000596121 AKIRIN1Q9H9L7 192 aaPredicted RBP10.77□□□□□ -0.69
VRK3-210ENST00000596121 LRRC4CQ9HCJ2 640 aa10.77□□□□□ -0.69
VRK3-210ENST00000596121 C1GALT1Q9NS00 363 aa10.77□□□□□ -0.69
VRK3-210ENST00000596121 FGF21Q9NSA1 209 aa10.77□□□□□ -0.69
VRK3-210ENST00000596121 ADAMTS6Q9UKP5 1117 aa10.77□□□□□ -0.69
VRK3-210ENST00000596121 IKZF3Q9UKT9 509 aa10.77□□□□□ -0.69
VRK3-210ENST00000596121 TMEM184BQ9Y519 407 aaPredicted RBP10.77□□□□□ -0.69
VRK3-210ENST00000596121 COMMD10Q9Y6G5 202 aa10.77□□□□□ -0.69
VRK3-210ENST00000596121 TCRBV9S1A1TA0A576 114 aa10.76□□□□□ -0.69
VRK3-210ENST00000596121 CTAGE15A4D2H0 777 aa10.76□□□□□ -0.69
VRK3-210ENST00000596121 ISM1B1AKI9 464 aa10.76□□□□□ -0.69
VRK3-210ENST00000596121 STMND1H3BQB6 276 aa10.76□□□□□ -0.69
VRK3-210ENST00000596121 GFYI3L273 518 aa10.76□□□□□ -0.69
VRK3-210ENST00000596121 KIF2AO00139 706 aaPredicted RBP10.76□□□□□ -0.69
VRK3-210ENST00000596121 MYO1CO00159 1063 aa10.76□□□□□ -0.69
VRK3-210ENST00000596121 MATN2O00339 956 aa10.76□□□□□ -0.69
VRK3-210ENST00000596121 NDC80O14777 642 aa10.76□□□□□ -0.69
VRK3-210ENST00000596121 NRP2O60462 931 aa10.76□□□□□ -0.69
VRK3-210ENST00000596121 RAD1O60671 282 aa10.76□□□□□ -0.69
VRK3-210ENST00000596121 VPS26AO75436 327 aa10.76□□□□□ -0.69
VRK3-210ENST00000596121 STK17BO94768 372 aa10.76□□□□□ -0.69
VRK3-210ENST00000596121 CTAGE8P0CG41 777 aa10.76□□□□□ -0.69
VRK3-210ENST00000596121 MPC1LP0DKB6 136 aa10.76□□□□□ -0.69
VRK3-210ENST00000596121 FDXRP22570 491 aa10.76□□□□□ -0.69
VRK3-210ENST00000596121 CD82P27701 267 aa10.76□□□□□ -0.69
VRK3-210ENST00000596121 PSMB5P28074 263 aa10.76□□□□□ -0.69
VRK3-210ENST00000596121 ECHS1P30084 290 aa10.76□□□□□ -0.69
VRK3-210ENST00000596121 MAGEA4P43358 317 aa10.76□□□□□ -0.69
VRK3-210ENST00000596121 CAV1Q03135 178 aa10.76□□□□□ -0.69
VRK3-210ENST00000596121 TUBB3Q13509 450 aa10.76□□□□□ -0.69
VRK3-210ENST00000596121 IL11RAQ14626 422 aa10.76□□□□□ -0.69
VRK3-210ENST00000596121 CYP2A13Q16696 494 aa10.76□□□□□ -0.69
VRK3-210ENST00000596121 SLC5A12Q1EHB4 618 aa10.76□□□□□ -0.69
VRK3-210ENST00000596121 FCRL6Q6DN72 434 aa10.76□□□□□ -0.69
VRK3-210ENST00000596121 C3orf62Q6ZUJ4 267 aa10.76□□□□□ -0.69
VRK3-210ENST00000596121 NEK10Q6ZWH5 1172 aa10.76□□□□□ -0.69
VRK3-210ENST00000596121 STRA8Q7Z7C7 330 aa10.76□□□□□ -0.69
VRK3-210ENST00000596121 CTAGE6Q86UF2 777 aa10.76□□□□□ -0.69
VRK3-210ENST00000596121 ZC3HC1Q86WB0 502 aaKnown RBP10.76□□□□□ -0.69
VRK3-210ENST00000596121 CCDC25Q86WR0 208 aa10.76□□□□□ -0.69
VRK3-210ENST00000596121 CTAGE4Q8IX94 777 aa10.76□□□□□ -0.69
VRK3-210ENST00000596121 PALM2Q8IXS6 379 aa10.76□□□□□ -0.69
VRK3-210ENST00000596121 LRRC56Q8IYG6 542 aaPredicted RBP10.76□□□□□ -0.69
VRK3-210ENST00000596121 CARFQ8N187 725 aa10.76□□□□□ -0.69
VRK3-210ENST00000596121 SLC38A9Q8NBW4 561 aa10.76□□□□□ -0.69
VRK3-210ENST00000596121 OR9A1PQ8NGU1 263 aa10.76□□□□□ -0.69
VRK3-210ENST00000596121 OR1L3Q8NH93 324 aa10.76□□□□□ -0.69
VRK3-210ENST00000596121 KIF18AQ8NI77 898 aa10.76□□□□□ -0.69
VRK3-210ENST00000596121 HMGCLL1Q8TB92 370 aa10.76□□□□□ -0.69
VRK3-210ENST00000596121 TEFMQ96QE5 360 aaKnown RBP10.76□□□□□ -0.69
VRK3-210ENST00000596121 CCDC68Q9H2F9 335 aa10.76□□□□□ -0.69
VRK3-210ENST00000596121 SOHLH2Q9NX45 425 aa10.76□□□□□ -0.69
VRK3-210ENST00000596121 TRMT6Q9UJA5 497 aaKnown RBP10.76□□□□□ -0.69
VRK3-210ENST00000596121 SLC39A10Q9ULF5 831 aa10.76□□□□□ -0.69
VRK3-210ENST00000596121 LHX6Q9UPM6 363 aa10.76□□□□□ -0.69
VRK3-210ENST00000596121 VWA7Q9Y334 891 aa10.76□□□□□ -0.69
VRK3-210ENST00000596121 A0A0J9YY10 115 aa10.75□□□□□ -0.69
VRK3-210ENST00000596121 LOC101059948A0A1B0GTJ6 334 aa10.75□□□□□ -0.69
VRK3-210ENST00000596121 FAM159BA6NKW6 160 aa10.75□□□□□ -0.69
VRK3-210ENST00000596121 H3BMH7 237 aa10.75□□□□□ -0.69
VRK3-210ENST00000596121 KIAA0754O94854 1291 aa10.75□□□□□ -0.69
VRK3-210ENST00000596121 RPN2P04844 631 aa10.75□□□□□ -0.69
VRK3-210ENST00000596121 CBSLP0DN79 551 aa10.75□□□□□ -0.69
VRK3-210ENST00000596121 ERGP11308 486 aa10.75□□□□□ -0.69
VRK3-210ENST00000596121 CBSP35520 551 aa10.75□□□□□ -0.69
VRK3-210ENST00000596121 CCNFP41002 786 aa10.75□□□□□ -0.69
VRK3-210ENST00000596121 ARL4DP49703 201 aa10.75□□□□□ -0.69
VRK3-210ENST00000596121 TAS2R39P59534 338 aa10.75□□□□□ -0.69
VRK3-210ENST00000596121 TUBB4BP68371 445 aa10.75□□□□□ -0.69
VRK3-210ENST00000596121 CXADRP78310 365 aa10.75□□□□□ -0.69
VRK3-210ENST00000596121 TUBB2AQ13885 445 aa10.75□□□□□ -0.69
VRK3-210ENST00000596121 KIR2DS3Q14952 304 aa10.75□□□□□ -0.69
VRK3-210ENST00000596121 ZXDCQ2QGD7 858 aaPredicted RBP10.75□□□□□ -0.69
VRK3-210ENST00000596121 TTLL9Q3SXZ7 439 aa10.75□□□□□ -0.69
VRK3-210ENST00000596121 LARP7Q4G0J3 582 aaKnown RBP eCLIP10.75□□□□□ -0.69
VRK3-210ENST00000596121 KIAA1614Q5VZ46 1190 aa10.75□□□□□ -0.69
VRK3-210ENST00000596121 CYS1Q717R9 158 aa10.75□□□□□ -0.69
VRK3-210ENST00000596121 CEP97Q8IW35 865 aa10.75□□□□□ -0.69
VRK3-210ENST00000596121 CACNA2D3Q8IZS8 1091 aa10.75□□□□□ -0.69
VRK3-210ENST00000596121 DNAJC22Q8N4W6 341 aa10.75□□□□□ -0.69
VRK3-210ENST00000596121 GPATCH11Q8N954 259 aa10.75□□□□□ -0.69
VRK3-210ENST00000596121 C19orf47Q8N9M1 422 aaKnown RBP10.75□□□□□ -0.69
VRK3-210ENST00000596121 GALNT6Q8NCL4 622 aa10.75□□□□□ -0.69
VRK3-210ENST00000596121 MNS1Q8NEH6 495 aa10.75□□□□□ -0.69
VRK3-210ENST00000596121 OR2A1Q8NGT9 310 aa10.75□□□□□ -0.69
VRK3-210ENST00000596121 LINGO1Q96FE5 620 aa10.75□□□□□ -0.69
VRK3-210ENST00000596121 CCNL2Q96S94 520 aaPredicted RBP10.75□□□□□ -0.69
VRK3-210ENST00000596121 ZPBPQ9BS86 351 aa10.75□□□□□ -0.69
VRK3-210ENST00000596121 TUBB2BQ9BVA1 445 aa10.75□□□□□ -0.69
VRK3-210ENST00000596121 ULBP3Q9BZM4 244 aa10.75□□□□□ -0.69
VRK3-210ENST00000596121 PHACTR1Q9C0D0 580 aa10.75□□□□□ -0.69
VRK3-210ENST00000596121 SPRTNQ9H040 489 aaPredicted RBP10.75□□□□□ -0.69
VRK3-210ENST00000596121 ZFATQ9P243 1243 aa10.75□□□□□ -0.69
VRK3-210ENST00000596121 MTO1Q9Y2Z2 717 aaKnown RBP10.75□□□□□ -0.69
VRK3-210ENST00000596121 PCDHB11Q9Y5F2 797 aa10.75□□□□□ -0.69
VRK3-210ENST00000596121 IGSF10Q6WRI0 2623 aa10.75□□□□□ -0.69
VRK3-210ENST00000596121 CACNA1GO43497 2377 aa10.75□□□□□ -0.69
VRK3-210ENST00000596121 TERTO14746 1132 aaKnown RBP10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms