RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 RASGRF2O14827 1237 aa14.58□□□□□ -0.08
TRIM28-205ENST00000595028 NKX2-8O15522 239 aa14.58□□□□□ -0.08
TRIM28-205ENST00000595028 BANF1O75531 89 aa14.58□□□□□ -0.08
TRIM28-205ENST00000595028 C1orf105O95561 183 aa14.58□□□□□ -0.08
TRIM28-205ENST00000595028 CCNYL3P0C7X3 344 aa14.58□□□□□ -0.08
TRIM28-205ENST00000595028 NFKB2Q00653 900 aa14.58□□□□□ -0.08
TRIM28-205ENST00000595028 MC1RQ01726 317 aa14.58□□□□□ -0.08
TRIM28-205ENST00000595028 DHX9Q08211 1270 aaKnown RBP14.58□□□□□ -0.08
TRIM28-205ENST00000595028 CTBP1Q13363 440 aa14.58□□□□□ -0.08
TRIM28-205ENST00000595028 DNASE1L3Q13609 305 aa14.58□□□□□ -0.08
TRIM28-205ENST00000595028 MORF4L2Q15014 288 aa14.58□□□□□ -0.08
TRIM28-205ENST00000595028 TBR1Q16650 682 aa14.58□□□□□ -0.08
TRIM28-205ENST00000595028 CNSTQ6PJW8 725 aa14.58□□□□□ -0.08
TRIM28-205ENST00000595028 TAX1BP1Q86VP1 789 aa14.58□□□□□ -0.08
TRIM28-205ENST00000595028 KCNMB4Q86W47 210 aa14.58□□□□□ -0.08
TRIM28-205ENST00000595028 OR2L8Q8NGY9 312 aa14.58□□□□□ -0.08
TRIM28-205ENST00000595028 OR1L3Q8NH93 324 aa14.58□□□□□ -0.08
TRIM28-205ENST00000595028 CALML6Q8TD86 181 aa14.58□□□□□ -0.08
TRIM28-205ENST00000595028 RAD51AP1Q96B01 352 aa14.58□□□□□ -0.08
TRIM28-205ENST00000595028 FOPNLQ96NB1 174 aa14.58□□□□□ -0.08
TRIM28-205ENST00000595028 IL17FQ96PD4 163 aa14.58□□□□□ -0.08
TRIM28-205ENST00000595028 TRIM51Q9BSJ1 452 aa14.58□□□□□ -0.08
TRIM28-205ENST00000595028 CHRNA10Q9GZZ6 450 aa14.58□□□□□ -0.08
TRIM28-205ENST00000595028 RNF14Q9UBS8 474 aa14.58□□□□□ -0.08
TRIM28-205ENST00000595028 PADI1Q9ULC6 663 aa14.58□□□□□ -0.08
TRIM28-205ENST00000595028 PCDHB3Q9Y5E6 796 aa14.58□□□□□ -0.08
TRIM28-205ENST00000595028 MRPS18BQ9Y676 258 aaKnown RBP14.58□□□□□ -0.08
TRIM28-205ENST00000595028 FAM169AQ9Y6X4 670 aa14.58□□□□□ -0.08
TRIM28-205ENST00000595028 ISM1B1AKI9 464 aa14.57□□□□□ -0.08
TRIM28-205ENST00000595028 C21orf140B9A014 251 aa14.57□□□□□ -0.08
TRIM28-205ENST00000595028 TTI1O43156 1089 aa14.57□□□□□ -0.08
TRIM28-205ENST00000595028 TTC4O95801 387 aa14.57□□□□□ -0.08
TRIM28-205ENST00000595028 PRKAR1AP10644 381 aa14.57□□□□□ -0.08
TRIM28-205ENST00000595028 CHRM3P20309 590 aa14.57□□□□□ -0.08
TRIM28-205ENST00000595028 CYP2A7P20853 494 aa14.57□□□□□ -0.08
TRIM28-205ENST00000595028 CD9P21926 228 aa14.57□□□□□ -0.08
TRIM28-205ENST00000595028 OAS2P29728 719 aaKnown RBP14.57□□□□□ -0.08
TRIM28-205ENST00000595028 CCNFP41002 786 aa14.57□□□□□ -0.08
TRIM28-205ENST00000595028 PAFAH1B1P43034 410 aa14.57□□□□□ -0.08
TRIM28-205ENST00000595028 CLCN7P51798 805 aa14.57□□□□□ -0.08
TRIM28-205ENST00000595028 MPP1Q00013 466 aa14.57□□□□□ -0.08
TRIM28-205ENST00000595028 GPS2Q13227 327 aa14.57□□□□□ -0.08
TRIM28-205ENST00000595028 ZIC1Q15915 447 aa14.57□□□□□ -0.08
TRIM28-205ENST00000595028 CCSMST1Q4G0I0 132 aa14.57□□□□□ -0.08
TRIM28-205ENST00000595028 MSS51Q4VC12 460 aa14.57□□□□□ -0.08
TRIM28-205ENST00000595028 CRTC2Q53ET0 693 aaPredicted RBP14.57□□□□□ -0.08
TRIM28-205ENST00000595028 HSP90AA5PQ58FG0 334 aa14.57□□□□□ -0.08
TRIM28-205ENST00000595028 PRAMEF17Q5VTA0 474 aa14.57□□□□□ -0.08
TRIM28-205ENST00000595028 TTC23LQ6PF05 361 aa14.57□□□□□ -0.08
TRIM28-205ENST00000595028 ATG14Q6ZNE5 492 aa14.57□□□□□ -0.08
TRIM28-205ENST00000595028 GIMAP7Q8NHV1 300 aa14.57□□□□□ -0.08
TRIM28-205ENST00000595028 KCNJ9Q92806 393 aa14.57□□□□□ -0.08
TRIM28-205ENST00000595028 TCTN2Q96GX1 697 aa14.57□□□□□ -0.08
TRIM28-205ENST00000595028 LRFN5Q96NI6 719 aa14.57□□□□□ -0.08
TRIM28-205ENST00000595028 CATSPER2Q96P56 530 aa14.57□□□□□ -0.08
TRIM28-205ENST00000595028 EBNA1BP2Q99848 306 aaKnown RBP14.57□□□□□ -0.08
TRIM28-205ENST00000595028 ARHGAP9Q9BRR9 750 aa14.57□□□□□ -0.08
TRIM28-205ENST00000595028 NAT9Q9BTE0 207 aa14.57□□□□□ -0.08
TRIM28-205ENST00000595028 CCDC68Q9H2F9 335 aa14.57□□□□□ -0.08
TRIM28-205ENST00000595028 FAM60AQ9NP50 221 aa14.57□□□□□ -0.08
TRIM28-205ENST00000595028 GALPQ9UBC7 116 aa14.57□□□□□ -0.08
TRIM28-205ENST00000595028 TSR3Q9UJK0 312 aaKnown RBP14.57□□□□□ -0.08
TRIM28-205ENST00000595028 KCND3Q9UK17 655 aa14.57□□□□□ -0.08
TRIM28-205ENST00000595028 FBXO5Q9UKT4 447 aa14.57□□□□□ -0.08
TRIM28-205ENST00000595028 SLC39A10Q9ULF5 831 aa14.57□□□□□ -0.08
TRIM28-205ENST00000595028 MED16Q9Y2X0 877 aa14.57□□□□□ -0.08
TRIM28-205ENST00000595028 PCDHGA6Q9Y5G7 932 aa14.57□□□□□ -0.08
TRIM28-205ENST00000595028 KRT87PA6NCN2 255 aa14.56□□□□□ -0.08
TRIM28-205ENST00000595028 SMAPO00193 183 aa14.56□□□□□ -0.08
TRIM28-205ENST00000595028 SEC31AO94979 1220 aaKnown RBP14.56□□□□□ -0.08
TRIM28-205ENST00000595028 MATN4O95460 622 aa14.56□□□□□ -0.08
TRIM28-205ENST00000595028 GP1BBP13224 206 aa14.56□□□□□ -0.08
TRIM28-205ENST00000595028 TCN2P20062 427 aa14.56□□□□□ -0.08
TRIM28-205ENST00000595028 GABRA4P48169 554 aa14.56□□□□□ -0.08
TRIM28-205ENST00000595028 ITGA1P56199 1179 aa14.56□□□□□ -0.08
TRIM28-205ENST00000595028 DEFB110Q30KQ9 67 aa14.56□□□□□ -0.08
TRIM28-205ENST00000595028 TTLL9Q3SXZ7 439 aa14.56□□□□□ -0.08
TRIM28-205ENST00000595028 BBS9Q3SYG4 887 aa14.56□□□□□ -0.08
TRIM28-205ENST00000595028 ACSBG2Q5FVE4 666 aa14.56□□□□□ -0.08
TRIM28-205ENST00000595028 SPANXN3Q5MJ09 141 aa14.56□□□□□ -0.08
TRIM28-205ENST00000595028 HIBCHQ6NVY1 386 aaPredicted RBP14.56□□□□□ -0.08
TRIM28-205ENST00000595028 ZNF549Q6P9A3 640 aa14.56□□□□□ -0.08
TRIM28-205ENST00000595028 BORAQ6PGQ7 559 aa14.56□□□□□ -0.08
TRIM28-205ENST00000595028 ZNF517Q6ZMY9 492 aaPredicted RBP14.56□□□□□ -0.08
TRIM28-205ENST00000595028 PDIK1LQ8N165 341 aa14.56□□□□□ -0.08
TRIM28-205ENST00000595028 C17orf53Q8N3J3 647 aaPredicted RBP14.56□□□□□ -0.08
TRIM28-205ENST00000595028 RAB42Q8N4Z0 105 aa14.56□□□□□ -0.08
TRIM28-205ENST00000595028 LMNTD1Q8N9Z9 388 aa14.56□□□□□ -0.08
TRIM28-205ENST00000595028 SLC38A9Q8NBW4 561 aa14.56□□□□□ -0.08
TRIM28-205ENST00000595028 HMGCLL1Q8TB92 370 aa14.56□□□□□ -0.08
TRIM28-205ENST00000595028 DENND1AQ8TEH3 1009 aa14.56□□□□□ -0.08
TRIM28-205ENST00000595028 SLC22A18Q96BI1 424 aa14.56□□□□□ -0.08
TRIM28-205ENST00000595028 ACTR5Q9H9F9 607 aaPredicted RBP14.56□□□□□ -0.08
TRIM28-205ENST00000595028 AKIRIN1Q9H9L7 192 aaPredicted RBP14.56□□□□□ -0.08
TRIM28-205ENST00000595028 IARS2Q9NSE4 1012 aaKnown RBP14.56□□□□□ -0.08
TRIM28-205ENST00000595028 SPATA7Q9P0W8 599 aa14.56□□□□□ -0.08
TRIM28-205ENST00000595028 COMMD10Q9Y6G5 202 aa14.56□□□□□ -0.08
TRIM28-205ENST00000595028 ARHGEF33A8MVX0 844 aa14.55□□□□□ -0.08
TRIM28-205ENST00000595028 E7EQ34 232 aa14.55□□□□□ -0.08
TRIM28-205ENST00000595028 KATNA1O75449 491 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms