RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 M0QYG6 137 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 SLC33A1O00400 549 aaPredicted RBP6.03□□□□□ -1.44
VPS53-212ENST00000572259 ZNF185O15231 689 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 ZSCAN9O15535 394 aaPredicted RBP6.03□□□□□ -1.44
VPS53-212ENST00000572259 DIAPH2O60879 1101 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 ERN1O75460 977 aaKnown RBP6.03□□□□□ -1.44
VPS53-212ENST00000572259 VNN1O95497 513 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 GPANK1O95872 356 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 ONECUT2O95948 504 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 RHOXF2BP0C7M4 288 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 TRIM49P0CI25 452 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 TRIM49CP0CI26 452 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 PRG2P13727 222 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 PSMC3P17980 439 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 GABRB1P18505 474 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 TCEA1P23193 301 aaKnown RBP6.03□□□□□ -1.44
VPS53-212ENST00000572259 CYP2F1P24903 491 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 AVPR1AP37288 418 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 VIPR2P41587 438 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 MAGEA4P43358 317 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 MFAP4P55083 255 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 STX17P56962 302 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 DEUP1Q05D60 604 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 TRA2AQ13595 282 aaKnown RBP eCLIP6.03□□□□□ -1.44
VPS53-212ENST00000572259 SNX1Q13596 522 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 HTR4Q13639 388 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 THOC5Q13769 683 aaKnown RBP6.03□□□□□ -1.44
VPS53-212ENST00000572259 RPS6KA1Q15418 735 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 TEAD2Q15562 447 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 ZNF750Q32MQ0 723 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 SLC9B1Q4ZJI4 515 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 RABL3Q5HYI8 236 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 MDH1BQ5I0G3 518 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 CRB2Q5IJ48 1285 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 TEX35Q5T0J7 233 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 GKAP1Q5VSY0 366 aaPredicted RBP6.03□□□□□ -1.44
VPS53-212ENST00000572259 SASS6Q6UVJ0 657 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 SCARA5Q6ZMJ2 495 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 GBP6Q6ZN66 633 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 RRM2BQ7LG56 351 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 TMPRSS6Q8IU80 811 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 C1orf210Q8IVY1 113 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 ZC3H3Q8IXZ2 948 aaKnown RBP6.03□□□□□ -1.44
VPS53-212ENST00000572259 FAM185AQ8N0U4 392 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 CRYBG2Q8N1P7 616 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP6.03□□□□□ -1.44
VPS53-212ENST00000572259 PDPRQ8NCN5 879 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 BCAS4Q8TDM0 211 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 TAS1R2Q8TE23 839 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 ABHD5Q8WTS1 349 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 ING5Q8WYH8 240 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 ITFG2Q969R8 447 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 MYLPFQ96A32 169 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 EEF2KMTQ96G04 330 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 SMARCD1Q96GM5 515 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 ZDHHC12Q96GR4 267 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 PCED1BQ96HM7 432 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 CNOT6LQ96LI5 555 aaKnown RBP6.03□□□□□ -1.44
VPS53-212ENST00000572259 FAM210AQ96ND0 272 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 AGAP3Q96P47 875 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 SLITRK1Q96PX8 696 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 SMOQ99835 787 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 RHOXF2Q9BQY4 288 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 MRPL45Q9BRJ2 306 aaKnown RBP6.03□□□□□ -1.44
VPS53-212ENST00000572259 TRMT61BQ9BVS5 477 aaKnown RBP6.03□□□□□ -1.44
VPS53-212ENST00000572259 TLR10Q9BXR5 811 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 SERHL2Q9H4I8 314 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 DDX18Q9NVP1 670 aaKnown RBP6.03□□□□□ -1.44
VPS53-212ENST00000572259 PARPBPQ9NWS1 579 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 SH3BP4Q9P0V3 963 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 ITM2BQ9Y287 266 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 TESMINQ9Y4I5 508 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 UTP18Q9Y5J1 556 aaKnown RBP eCLIP6.03□□□□□ -1.44
VPS53-212ENST00000572259 CLCA3PQ9Y6N3 262 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 CACNA1HO95180 2353 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 CACNA1IQ9P0X4 2223 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 MUC6Q6W4X9 2439 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 ZNF318Q5VUA4 2279 aa6.02□□□□□ -1.44
VPS53-212ENST00000572259 MYO18AQ92614 2054 aaKnown RBP6.02□□□□□ -1.45
VPS53-212ENST00000572259 ATG2BQ96BY7 2078 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 MIA3Q5JRA6 1907 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 TRAV19A0A0A6YYK7 116 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 LINC00854A0A1B0GVQ3 168 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 CTAGE15A4D2H0 777 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 ZSCAN5CA6NGD5 496 aaPredicted RBP6.02□□□□□ -1.45
VPS53-212ENST00000572259 L7N2F9 121 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 MAGEB3O15480 346 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 FAM20BO75063 409 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 ATP2C2O75185 946 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 NOL4O94818 638 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 LETM1O95202 739 aaPredicted RBP6.02□□□□□ -1.45
VPS53-212ENST00000572259 VNN2O95498 520 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 CER1O95813 267 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 CTAGE8P0CG41 777 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 PIM1P11309 404 aaPredicted RBP6.02□□□□□ -1.45
VPS53-212ENST00000572259 CEBPBP17676 345 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 ATF6P18850 670 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 CD9P21926 228 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 GDI1P31150 447 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 SOX6P35712 828 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms