RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 NPPAP01160 153 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 LMNAP02545 664 aaKnown RBP7.76□□□□□ -1.17
VPS39-213ENST00000570062 SLC35G4P0C7Q5 338 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 T-ENOLP0DO92 83 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 CHRNB1P11230 501 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 GNAZP19086 355 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 IDSP22304 550 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 CXCR2P25025 360 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 EPHA3P29320 983 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 SERPINB1P30740 379 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 HALP42357 657 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 CASP2P42575 452 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 RABIFP47224 123 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 HSPA7P48741 367 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 METAP1P53582 386 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 CTSCP53634 463 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 ERVK-8P63133 956 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 PHEXP78562 749 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 ABRQ12979 859 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 RIPK1Q13546 671 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 NAA25Q14CX7 972 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 IRF4Q15306 451 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 PHKG1Q16816 387 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 SPATS1Q496A3 300 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 ZNF658BQ4V348 819 aaPredicted RBP7.76□□□□□ -1.17
VPS39-213ENST00000570062 VWA5B1Q5TIE3 1220 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 KIAA1324Q6UXG2 1013 aaKnown RBP7.76□□□□□ -1.17
VPS39-213ENST00000570062 WASH2PQ6VEQ5 465 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 PRR23BQ6ZRT6 265 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 MAVSQ7Z434 540 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 PDZD3Q86UT5 571 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 DCUN1D3Q8IWE4 304 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 TBC1D21Q8IYX1 336 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 PELI3Q8N2H9 469 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 PGBD3Q8N328 593 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 MIER2Q8N344 545 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 CAMKK1Q8N5S9 505 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 L3MBTL4Q8NA19 623 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 ST13P5Q8NFI4 369 aaPredicted RBP7.76□□□□□ -1.17
VPS39-213ENST00000570062 OR4F6Q8NGB9 312 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 OR56A3Q8NH54 315 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 DNAJB8Q8NHS0 232 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 ZFPM2Q8WW38 1151 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 TUBGCP3Q96CW5 907 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 OR52B2Q96RD2 323 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 MRPL1Q9BYD6 325 aaKnown RBP7.76□□□□□ -1.17
VPS39-213ENST00000570062 TRIT1Q9H3H1 467 aaKnown RBP7.76□□□□□ -1.17
VPS39-213ENST00000570062 ELOVL6Q9H5J4 265 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 WDR55Q9H6Y2 383 aaPredicted RBP7.76□□□□□ -1.17
VPS39-213ENST00000570062 LMAN1LQ9HAT1 526 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 ZBTB26Q9HCK0 441 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 WASH6PQ9NQA3 447 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 USP36Q9P275 1121 aaKnown RBP7.76□□□□□ -1.17
VPS39-213ENST00000570062 ADAMTS6Q9UKP5 1117 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 PRPF19Q9UMS4 504 aaKnown RBP7.76□□□□□ -1.17
VPS39-213ENST00000570062 ZFR2Q9UPR6 939 aaKnown RBP7.76□□□□□ -1.17
VPS39-213ENST00000570062 EIF3LQ9Y262 564 aaKnown RBP7.76□□□□□ -1.17
VPS39-213ENST00000570062 NDUFAF1Q9Y375 327 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 DYRK1BQ9Y463 629 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 PCDHGA11Q9Y5H2 935 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 COLEC10Q9Y6Z7 277 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 TRANK1O15050 2925 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 MYO7AQ13402 2215 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 C2orf16Q68DN1 1984 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 KANSL1LA0AUZ9 987 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 K7ESM1 405 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 OR7A17O14581 309 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 PIP5K1BO14986 540 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 LATO43561 262 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 SKAP2O75563 359 aaPredicted RBP7.75□□□□□ -1.17
VPS39-213ENST00000570062 CIB2O75838 187 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 CBX6O95503 412 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 C1orf105O95561 183 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 SEMA4FO95754 770 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 CAPN1P07384 714 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 SNRPB2P08579 225 aaKnown RBP7.75□□□□□ -1.17
VPS39-213ENST00000570062 SLC2A4P14672 509 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 DDX5P17844 614 aaKnown RBP7.75□□□□□ -1.17
VPS39-213ENST00000570062 PRPH2P23942 346 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 HRH2P25021 359 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 PIK3R1P27986 724 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 ACADLP28330 430 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 GNPDA1P46926 289 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 AGTR2P50052 363 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 BLKP51451 505 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 TPMTP51580 245 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 ERVPABLB-1P60509 514 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 IRF8Q02556 426 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 EMX2Q04743 252 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 ART3Q13508 389 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 NFATC4Q14934 902 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 CCDC85BQ15834 202 aaPredicted RBP7.75□□□□□ -1.17
VPS39-213ENST00000570062 IMPG1Q17R60 797 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 PTCHD3Q3KNS1 767 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 KHDC1Q4VXA5 237 aaKnown RBP7.75□□□□□ -1.17
VPS39-213ENST00000570062 PDCD4Q53EL6 469 aaKnown RBP7.75□□□□□ -1.17
VPS39-213ENST00000570062 XKR7Q5GH72 579 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 WASHC2DQ5SRD0 308 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 CACHD1Q5VU97 1274 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 PRMT9Q6P2P2 845 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms