RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 OR1L3Q8NH93 324 aa14.52□□□□□ -0.09
VPS39-210ENST00000568357 GIMAP7Q8NHV1 300 aa14.52□□□□□ -0.09
VPS39-210ENST00000568357 CALML6Q8TD86 181 aa14.52□□□□□ -0.09
VPS39-210ENST00000568357 SNF8Q96H20 258 aa14.52□□□□□ -0.09
VPS39-210ENST00000568357 PIEZO2Q9H5I5 2752 aa14.51□□□□□ -0.09
VPS39-210ENST00000568357 EFCAB8A8MWE9 144 aa14.51□□□□□ -0.09
VPS39-210ENST00000568357 E5RI56 91 aa14.51□□□□□ -0.09
VPS39-210ENST00000568357 TERTO14746 1132 aaKnown RBP14.51□□□□□ -0.09
VPS39-210ENST00000568357 RASGRF2O14827 1237 aa14.51□□□□□ -0.09
VPS39-210ENST00000568357 NKX2-8O15522 239 aa14.51□□□□□ -0.09
VPS39-210ENST00000568357 HCRTR1O43613 425 aa14.51□□□□□ -0.09
VPS39-210ENST00000568357 KDM1AO60341 852 aa14.51□□□□□ -0.09
VPS39-210ENST00000568357 TTC4O95801 387 aa14.51□□□□□ -0.09
VPS39-210ENST00000568357 ATP5DP30049 168 aa14.51□□□□□ -0.09
VPS39-210ENST00000568357 BDKRB1P46663 353 aa14.51□□□□□ -0.09
VPS39-210ENST00000568357 CSRP3P50461 194 aa14.51□□□□□ -0.09
VPS39-210ENST00000568357 KIR2DS3Q14952 304 aa14.51□□□□□ -0.09
VPS39-210ENST00000568357 LINC00303Q3SY05 128 aa14.51□□□□□ -0.09
VPS39-210ENST00000568357 SPANXN3Q5MJ09 141 aa14.51□□□□□ -0.09
VPS39-210ENST00000568357 C2CD4AQ8NCU7 369 aaPredicted RBP14.51□□□□□ -0.09
VPS39-210ENST00000568357 OR2L8Q8NGY9 312 aa14.51□□□□□ -0.09
VPS39-210ENST00000568357 OR8K5Q8NH50 307 aa14.51□□□□□ -0.09
VPS39-210ENST00000568357 RAD51AP1Q96B01 352 aa14.51□□□□□ -0.09
VPS39-210ENST00000568357 MED8Q96G25 268 aa14.51□□□□□ -0.09
VPS39-210ENST00000568357 SLC45A3Q96JT2 553 aa14.51□□□□□ -0.09
VPS39-210ENST00000568357 FAM167BQ9BTA0 163 aa14.51□□□□□ -0.09
VPS39-210ENST00000568357 NAT9Q9BTE0 207 aa14.51□□□□□ -0.09
VPS39-210ENST00000568357 LHX9Q9NQ69 397 aa14.51□□□□□ -0.09
VPS39-210ENST00000568357 PADI1Q9ULC6 663 aa14.51□□□□□ -0.09
VPS39-210ENST00000568357 KLHL20Q9Y2M5 609 aa14.51□□□□□ -0.09
VPS39-210ENST00000568357 MRPS18BQ9Y676 258 aaKnown RBP14.51□□□□□ -0.09
VPS39-210ENST00000568357 TEX264Q9Y6I9 313 aa14.51□□□□□ -0.09
VPS39-210ENST00000568357 A0A0J9YY10 115 aa14.5□□□□□ -0.09
VPS39-210ENST00000568357 TMEM150CB9EJG8 249 aa14.5□□□□□ -0.09
VPS39-210ENST00000568357 SMAPO00193 183 aa14.5□□□□□ -0.09
VPS39-210ENST00000568357 SCRG1O75711 98 aa14.5□□□□□ -0.09
VPS39-210ENST00000568357 CCNYL3P0C7X3 344 aa14.5□□□□□ -0.09
VPS39-210ENST00000568357 MSL3P1P0C860 447 aa14.5□□□□□ -0.09
VPS39-210ENST00000568357 DLSTP36957 453 aa14.5□□□□□ -0.09
VPS39-210ENST00000568357 CARSP49589 748 aaKnown RBP14.5□□□□□ -0.09
VPS39-210ENST00000568357 TIAL1Q01085 375 aaKnown RBP eCLIP14.5□□□□□ -0.09
VPS39-210ENST00000568357 C2orf54Q08AI8 447 aa14.5□□□□□ -0.09
VPS39-210ENST00000568357 SLC5A12Q1EHB4 618 aa14.5□□□□□ -0.09
VPS39-210ENST00000568357 KLHL38Q2WGJ6 581 aa14.5□□□□□ -0.09
VPS39-210ENST00000568357 FAM199XQ6PEV8 388 aaPredicted RBP14.5□□□□□ -0.09
VPS39-210ENST00000568357 TTC23LQ6PF05 361 aa14.5□□□□□ -0.09
VPS39-210ENST00000568357 TAX1BP1Q86VP1 789 aa14.5□□□□□ -0.09
VPS39-210ENST00000568357 TMEM126BQ8IUX1 230 aa14.5□□□□□ -0.09
VPS39-210ENST00000568357 C19orf47Q8N9M1 422 aaKnown RBP14.5□□□□□ -0.09
VPS39-210ENST00000568357 DENND1AQ8TEH3 1009 aa14.5□□□□□ -0.09
VPS39-210ENST00000568357 KCNJ9Q92806 393 aa14.5□□□□□ -0.09
VPS39-210ENST00000568357 EXTL1Q92935 676 aa14.5□□□□□ -0.09
VPS39-210ENST00000568357 KIAA1143Q96AT1 154 aaPredicted RBP14.5□□□□□ -0.09
VPS39-210ENST00000568357 CFAP36Q96G28 342 aa14.5□□□□□ -0.09
VPS39-210ENST00000568357 TCTN2Q96GX1 697 aa14.5□□□□□ -0.09
VPS39-210ENST00000568357 FOPNLQ96NB1 174 aa14.5□□□□□ -0.09
VPS39-210ENST00000568357 GPR21Q99679 349 aa14.5□□□□□ -0.09
VPS39-210ENST00000568357 SYTL2Q9HCH5 934 aa14.5□□□□□ -0.09
VPS39-210ENST00000568357 KLHL42Q9P2K6 505 aa14.5□□□□□ -0.09
VPS39-210ENST00000568357 ZC3H7BQ9UGR2 993 aaKnown RBP14.5□□□□□ -0.09
VPS39-210ENST00000568357 CROTQ9UKG9 612 aa14.5□□□□□ -0.09
VPS39-210ENST00000568357 SLC39A10Q9ULF5 831 aa14.5□□□□□ -0.09
VPS39-210ENST00000568357 CHMP2BQ9UQN3 213 aa14.5□□□□□ -0.09
VPS39-210ENST00000568357 DHRS7Q9Y394 339 aa14.5□□□□□ -0.09
VPS39-210ENST00000568357 UBR5O95071 2799 aaPredicted RBP14.5□□□□□ -0.09
VPS39-210ENST00000568357 COL12A1Q99715 3063 aa14.5□□□□□ -0.09
VPS39-210ENST00000568357 MAP3K7O43318 606 aa14.49□□□□□ -0.09
VPS39-210ENST00000568357 RAD51CO43502 376 aa14.49□□□□□ -0.09
VPS39-210ENST00000568357 PRICKLE3O43900 615 aaPredicted RBP14.49□□□□□ -0.09
VPS39-210ENST00000568357 PSIP1O75475 530 aaKnown RBP14.49□□□□□ -0.09
VPS39-210ENST00000568357 AHSGP02765 367 aa14.49□□□□□ -0.09
VPS39-210ENST00000568357 MT-ND3P03897 115 aa14.49□□□□□ -0.09
VPS39-210ENST00000568357 CTSBP07858 339 aa14.49□□□□□ -0.09
VPS39-210ENST00000568357 CCNFP41002 786 aa14.49□□□□□ -0.09
VPS39-210ENST00000568357 GABRA4P48169 554 aa14.49□□□□□ -0.09
VPS39-210ENST00000568357 ARL4CP56559 192 aa14.49□□□□□ -0.09
VPS39-210ENST00000568357 GPS2Q13227 327 aa14.49□□□□□ -0.09
VPS39-210ENST00000568357 CUL1Q13616 776 aa14.49□□□□□ -0.09
VPS39-210ENST00000568357 TBR1Q16650 682 aa14.49□□□□□ -0.09
VPS39-210ENST00000568357 HIF1AQ16665 826 aa14.49□□□□□ -0.09
VPS39-210ENST00000568357 EEF1AKMT2Q5JPI9 291 aaKnown RBP14.49□□□□□ -0.09
VPS39-210ENST00000568357 TEDDM1Q5T9Z0 273 aa14.49□□□□□ -0.09
VPS39-210ENST00000568357 TRMT10BQ6PF06 316 aaKnown RBP14.49□□□□□ -0.09
VPS39-210ENST00000568357 CYHR1Q6ZMK1 362 aa14.49□□□□□ -0.09
VPS39-210ENST00000568357 ANKMY2Q8IV38 441 aa14.49□□□□□ -0.09
VPS39-210ENST00000568357 CNTN4Q8IWV2 1026 aa14.49□□□□□ -0.09
VPS39-210ENST00000568357 INPP5DQ92835 1189 aa14.49□□□□□ -0.09
VPS39-210ENST00000568357 CERS2Q96G23 380 aa14.49□□□□□ -0.09
VPS39-210ENST00000568357 NDNQ99608 321 aa14.49□□□□□ -0.09
VPS39-210ENST00000568357 ERP44Q9BS26 406 aa14.49□□□□□ -0.09
VPS39-210ENST00000568357 AARSD1Q9BTE6 412 aaKnown RBP14.49□□□□□ -0.09
VPS39-210ENST00000568357 EFHD1Q9BUP0 239 aa14.49□□□□□ -0.09
VPS39-210ENST00000568357 CHRNA10Q9GZZ6 450 aa14.49□□□□□ -0.09
VPS39-210ENST00000568357 CCDC68Q9H2F9 335 aa14.49□□□□□ -0.09
VPS39-210ENST00000568357 SLC17A6Q9P2U8 582 aa14.49□□□□□ -0.09
VPS39-210ENST00000568357 SERTAD3Q9UJW9 196 aa14.49□□□□□ -0.09
VPS39-210ENST00000568357 PCDHB3Q9Y5E6 796 aa14.49□□□□□ -0.09
VPS39-210ENST00000568357 COMMD10Q9Y6G5 202 aa14.49□□□□□ -0.09
VPS39-210ENST00000568357 DOPEY2Q9Y3R5 2298 aa14.48□□□□□ -0.09
VPS39-210ENST00000568357 FAM187AA6NFU0 413 aa14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms