RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 PDLIM1O00151 329 aa19.74■□□□□ 0.75
CLN3-230ENST00000568076 KPNA3O00505 521 aaPredicted RBP19.74■□□□□ 0.75
CLN3-230ENST00000568076 IL6P05231 212 aa19.74■□□□□ 0.75
CLN3-230ENST00000568076 POU2F2P09086 479 aa19.74■□□□□ 0.75
CLN3-230ENST00000568076 PREPP48147 710 aa19.74■□□□□ 0.75
CLN3-230ENST00000568076 PHC1P78364 1004 aa19.74■□□□□ 0.75
CLN3-230ENST00000568076 TXNL4AP83876 142 aaKnown RBP19.74■□□□□ 0.75
CLN3-230ENST00000568076 ABRQ12979 859 aa19.74■□□□□ 0.75
CLN3-230ENST00000568076 MAPKAPK3Q16644 382 aa19.74■□□□□ 0.75
CLN3-230ENST00000568076 GAB4Q2WGN9 574 aa19.74■□□□□ 0.75
CLN3-230ENST00000568076 NHSL2Q5HYW2 709 aa19.74■□□□□ 0.75
CLN3-230ENST00000568076 LDLRAP1Q5SW96 308 aa19.74■□□□□ 0.75
CLN3-230ENST00000568076 GLYATQ6IB77 296 aa19.74■□□□□ 0.75
CLN3-230ENST00000568076 CBR4Q8N4T8 237 aa19.74■□□□□ 0.75
CLN3-230ENST00000568076 ST13P5Q8NFI4 369 aaPredicted RBP19.74■□□□□ 0.75
CLN3-230ENST00000568076 SMG7Q92540 1137 aaKnown RBP19.74■□□□□ 0.75
CLN3-230ENST00000568076 ZNF583Q96ND8 569 aa19.74■□□□□ 0.75
CLN3-230ENST00000568076 WRAP53Q9BUR4 548 aaKnown RBP19.74■□□□□ 0.75
CLN3-230ENST00000568076 ANAPC2Q9UJX6 822 aa19.74■□□□□ 0.75
CLN3-230ENST00000568076 DLGAP1O14490 977 aa19.74■□□□□ 0.75
CLN3-230ENST00000568076 PSIP1O75475 530 aaKnown RBP19.74■□□□□ 0.75
CLN3-230ENST00000568076 ADH1CP00326 375 aa19.74■□□□□ 0.75
CLN3-230ENST00000568076 FAM58BPP0C7Q3 252 aa19.74■□□□□ 0.75
CLN3-230ENST00000568076 UMPSP11172 480 aa19.74■□□□□ 0.75
CLN3-230ENST00000568076 HLA-EP13747 358 aa19.74■□□□□ 0.75
CLN3-230ENST00000568076 ST8SIA6P61647 398 aa19.74■□□□□ 0.75
CLN3-230ENST00000568076 RPS14P62263 151 aaKnown RBP19.74■□□□□ 0.75
CLN3-230ENST00000568076 TMEM115Q12893 351 aaPredicted RBP19.74■□□□□ 0.75
CLN3-230ENST00000568076 CCSMST1Q4G0I0 132 aa19.74■□□□□ 0.75
CLN3-230ENST00000568076 INTS11Q5TA45 600 aaKnown RBP19.74■□□□□ 0.75
CLN3-230ENST00000568076 ERAP2Q6P179 960 aa19.74■□□□□ 0.75
CLN3-230ENST00000568076 IYDQ6PHW0 289 aa19.74■□□□□ 0.75
CLN3-230ENST00000568076 CARM1Q86X55 608 aa19.74■□□□□ 0.75
CLN3-230ENST00000568076 RNF175Q8N4F7 328 aa19.74■□□□□ 0.75
CLN3-230ENST00000568076 CENPNQ96H22 339 aaPredicted RBP19.74■□□□□ 0.75
CLN3-230ENST00000568076 IKZF5Q9H5V7 419 aa19.74■□□□□ 0.75
CLN3-230ENST00000568076 ZNF696Q9H7X3 374 aa19.74■□□□□ 0.75
CLN3-230ENST00000568076 MAGEL2Q9UJ55 1249 aa19.74■□□□□ 0.75
CLN3-230ENST00000568076 COQ6Q9Y2Z9 468 aa19.74■□□□□ 0.75
CLN3-230ENST00000568076 TNFAIP8O95379 198 aa19.73■□□□□ 0.75
CLN3-230ENST00000568076 CD22P20273 847 aa19.73■□□□□ 0.75
CLN3-230ENST00000568076 PRPH2P23942 346 aa19.73■□□□□ 0.75
CLN3-230ENST00000568076 TACR1P25103 407 aa19.73■□□□□ 0.75
CLN3-230ENST00000568076 PRLHRP49683 370 aa19.73■□□□□ 0.75
CLN3-230ENST00000568076 TMC5Q6UXY8 1006 aa19.73■□□□□ 0.75
CLN3-230ENST00000568076 SFTPA1Q8IWL2 248 aa19.73■□□□□ 0.75
CLN3-230ENST00000568076 HOMEZQ8IX15 550 aa19.73■□□□□ 0.75
CLN3-230ENST00000568076 VN1R2Q8NFZ6 395 aa19.73■□□□□ 0.75
CLN3-230ENST00000568076 APIPQ96GX9 242 aa19.73■□□□□ 0.75
CLN3-230ENST00000568076 COQ10AQ96MF6 247 aa19.73■□□□□ 0.75
CLN3-230ENST00000568076 V9GYQ6 96 aa19.73■□□□□ 0.75
CLN3-230ENST00000568076 NUP210Q8TEM1 1887 aaPredicted RBP19.73■□□□□ 0.75
CLN3-230ENST00000568076 SLC5A10A0PJK1 596 aa19.72■□□□□ 0.75
CLN3-230ENST00000568076 WNT9AO14904 365 aa19.72■□□□□ 0.75
CLN3-230ENST00000568076 ACOX3O15254 700 aa19.72■□□□□ 0.75
CLN3-230ENST00000568076 PGM3O95394 542 aa19.72■□□□□ 0.75
CLN3-230ENST00000568076 SOD1P00441 154 aa19.72■□□□□ 0.75
CLN3-230ENST00000568076 MT-ND1P03886 318 aa19.72■□□□□ 0.75
CLN3-230ENST00000568076 RB1P06400 928 aa19.72■□□□□ 0.75
CLN3-230ENST00000568076 EN2P19622 333 aaPredicted RBP19.72■□□□□ 0.75
CLN3-230ENST00000568076 HALP42357 657 aa19.72■□□□□ 0.75
CLN3-230ENST00000568076 CHIT1Q13231 466 aa19.72■□□□□ 0.75
CLN3-230ENST00000568076 ATP6AP1Q15904 470 aa19.72■□□□□ 0.75
CLN3-230ENST00000568076 GTDC1Q4AE62 458 aa19.72■□□□□ 0.75
CLN3-230ENST00000568076 DNAJC14Q6Y2X3 702 aaPredicted RBP19.72■□□□□ 0.75
CLN3-230ENST00000568076 CMTM7Q96FZ5 175 aa19.72■□□□□ 0.75
CLN3-230ENST00000568076 NSMCE2Q96MF7 247 aa19.72■□□□□ 0.75
CLN3-230ENST00000568076 SEPHS2Q99611 448 aa19.72■□□□□ 0.75
CLN3-230ENST00000568076 SLC6A13Q9NSD5 602 aa19.72■□□□□ 0.75
CLN3-230ENST00000568076 CIDEBQ9UHD4 219 aa19.72■□□□□ 0.75
CLN3-230ENST00000568076 OAZ3Q9UMX2 235 aa19.72■□□□□ 0.75
CLN3-230ENST00000568076 GRXCR1A8MXD5 290 aa19.72■□□□□ 0.75
CLN3-230ENST00000568076 NPIPB8E9PQR5 432 aa19.72■□□□□ 0.75
CLN3-230ENST00000568076 QSOX1O00391 747 aa19.72■□□□□ 0.75
CLN3-230ENST00000568076 PLOD2O00469 737 aa19.72■□□□□ 0.75
CLN3-230ENST00000568076 ATG13O75143 517 aa19.72■□□□□ 0.75
CLN3-230ENST00000568076 JUPP14923 745 aa19.72■□□□□ 0.75
CLN3-230ENST00000568076 SDC1P18827 310 aa19.72■□□□□ 0.75
CLN3-230ENST00000568076 GGT1P19440 569 aa19.72■□□□□ 0.75
CLN3-230ENST00000568076 CLDN8P56748 225 aa19.72■□□□□ 0.75
CLN3-230ENST00000568076 SYTL3Q4VX76 610 aa19.72■□□□□ 0.75
CLN3-230ENST00000568076 PYCR3Q53H96 274 aa19.72■□□□□ 0.75
CLN3-230ENST00000568076 FAM78AQ5JUQ0 283 aa19.72■□□□□ 0.75
CLN3-230ENST00000568076 C9orf64Q5T6V5 341 aa19.72■□□□□ 0.75
CLN3-230ENST00000568076 FRG2Q64ET8 278 aa19.72■□□□□ 0.75
CLN3-230ENST00000568076 CYP2U1Q7Z449 544 aa19.72■□□□□ 0.75
CLN3-230ENST00000568076 C7orf61Q8IZ16 206 aa19.72■□□□□ 0.75
CLN3-230ENST00000568076 NRSN1Q8IZ57 195 aa19.72■□□□□ 0.75
CLN3-230ENST00000568076 PACRGLQ8N7B6 248 aa19.72■□□□□ 0.75
CLN3-230ENST00000568076 GLMNQ92990 594 aa19.72■□□□□ 0.75
CLN3-230ENST00000568076 ARRDC3Q96B67 414 aa19.72■□□□□ 0.75
CLN3-230ENST00000568076 DTD2Q96FN9 168 aa19.72■□□□□ 0.75
CLN3-230ENST00000568076 FRG2BQ96QU4 278 aa19.72■□□□□ 0.75
CLN3-230ENST00000568076 OR52E6Q96RD3 313 aa19.72■□□□□ 0.75
CLN3-230ENST00000568076 CENPKQ9BS16 269 aa19.72■□□□□ 0.75
CLN3-230ENST00000568076 CCM2Q9BSQ5 444 aa19.72■□□□□ 0.75
CLN3-230ENST00000568076 TRBV5-3A0A0A0MS03 114 aa19.71■□□□□ 0.75
CLN3-230ENST00000568076 A0A1B0GTW7 788 aa19.71■□□□□ 0.75
CLN3-230ENST00000568076 KANSL1LA0AUZ9 987 aa19.71■□□□□ 0.75
CLN3-230ENST00000568076 FCGR1AP12314 374 aa19.71■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms