RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 CFAP36Q96G28 342 aa12.94□□□□□ -0.34
CLK3-213ENST00000563842 SLC45A3Q96JT2 553 aa12.94□□□□□ -0.34
CLK3-213ENST00000563842 C16orf45Q96MC5 204 aaPredicted RBP12.94□□□□□ -0.34
CLK3-213ENST00000563842 PPM1MQ96MI6 270 aa12.94□□□□□ -0.34
CLK3-213ENST00000563842 AARSD1Q9BTE6 412 aaKnown RBP12.94□□□□□ -0.34
CLK3-213ENST00000563842 TWSG1Q9GZX9 223 aa12.94□□□□□ -0.34
CLK3-213ENST00000563842 TAS2R13Q9NYV9 303 aa12.94□□□□□ -0.34
CLK3-213ENST00000563842 SPATA7Q9P0W8 599 aa12.94□□□□□ -0.34
CLK3-213ENST00000563842 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.94□□□□□ -0.34
CLK3-213ENST00000563842 CDC23Q9UJX2 597 aa12.94□□□□□ -0.34
CLK3-213ENST00000563842 KCND3Q9UK17 655 aa12.94□□□□□ -0.34
CLK3-213ENST00000563842 CORO1CQ9ULV4 474 aaPredicted RBP12.94□□□□□ -0.34
CLK3-213ENST00000563842 PCDHGA4Q9Y5G9 962 aa12.94□□□□□ -0.34
CLK3-213ENST00000563842 HELZ2Q9BYK8 2649 aaKnown RBP12.94□□□□□ -0.34
CLK3-213ENST00000563842 MDC1Q14676 2089 aaKnown RBP12.93□□□□□ -0.34
CLK3-213ENST00000563842 MGAQ8IWI9 3026 aa12.93□□□□□ -0.34
CLK3-213ENST00000563842 LOC101059948A0A1B0GTJ6 334 aa12.93□□□□□ -0.34
CLK3-213ENST00000563842 E7ESA3 106 aa12.93□□□□□ -0.34
CLK3-213ENST00000563842 KIF2AO00139 706 aaPredicted RBP12.93□□□□□ -0.34
CLK3-213ENST00000563842 TK2O00142 265 aa12.93□□□□□ -0.34
CLK3-213ENST00000563842 EIF3HO15372 352 aaKnown RBP eCLIP12.93□□□□□ -0.34
CLK3-213ENST00000563842 RAD51CO43502 376 aa12.93□□□□□ -0.34
CLK3-213ENST00000563842 BANF1O75531 89 aa12.93□□□□□ -0.34
CLK3-213ENST00000563842 SCRG1O75711 98 aa12.93□□□□□ -0.34
CLK3-213ENST00000563842 KLK3P07288 261 aaPredicted RBP12.93□□□□□ -0.34
CLK3-213ENST00000563842 HBQ1P09105 142 aa12.93□□□□□ -0.34
CLK3-213ENST00000563842 ZNF28P17035 718 aa12.93□□□□□ -0.34
CLK3-213ENST00000563842 HSD17B2P37059 387 aa12.93□□□□□ -0.34
CLK3-213ENST00000563842 CARSP49589 748 aaKnown RBP12.93□□□□□ -0.34
CLK3-213ENST00000563842 RGS4P49798 205 aa12.93□□□□□ -0.34
CLK3-213ENST00000563842 MPP1Q00013 466 aa12.93□□□□□ -0.34
CLK3-213ENST00000563842 CAV1Q03135 178 aa12.93□□□□□ -0.34
CLK3-213ENST00000563842 ILF2Q12905 390 aaKnown RBP12.93□□□□□ -0.34
CLK3-213ENST00000563842 PDIA2Q13087 525 aaKnown RBP12.93□□□□□ -0.34
CLK3-213ENST00000563842 GRB7Q14451 532 aa12.93□□□□□ -0.34
CLK3-213ENST00000563842 NAA25Q14CX7 972 aa12.93□□□□□ -0.34
CLK3-213ENST00000563842 TAF1BQ53T94 588 aaPredicted RBP12.93□□□□□ -0.34
CLK3-213ENST00000563842 STEAP4Q687X5 459 aa12.93□□□□□ -0.34
CLK3-213ENST00000563842 ZNF549Q6P9A3 640 aa12.93□□□□□ -0.34
CLK3-213ENST00000563842 ZNF572Q7Z3I7 529 aaPredicted RBP12.93□□□□□ -0.34
CLK3-213ENST00000563842 IGDCC3Q8IVU1 814 aa12.93□□□□□ -0.34
CLK3-213ENST00000563842 GPR135Q8IZ08 494 aa12.93□□□□□ -0.34
CLK3-213ENST00000563842 HMGCLL1Q8TB92 370 aa12.93□□□□□ -0.34
CLK3-213ENST00000563842 GPR21Q99679 349 aa12.93□□□□□ -0.34
CLK3-213ENST00000563842 MENTQ9BUN1 341 aa12.93□□□□□ -0.34
CLK3-213ENST00000563842 FAM117AQ9C073 453 aa12.93□□□□□ -0.34
CLK3-213ENST00000563842 SLC7A5P2Q9GIP4 190 aa12.93□□□□□ -0.34
CLK3-213ENST00000563842 SPHK1Q9NYA1 384 aa12.93□□□□□ -0.34
CLK3-213ENST00000563842 TRMT6Q9UJA5 497 aaKnown RBP12.93□□□□□ -0.34
CLK3-213ENST00000563842 PCDHB3Q9Y5E6 796 aa12.93□□□□□ -0.34
CLK3-213ENST00000563842 NFS1Q9Y697 457 aa12.93□□□□□ -0.34
CLK3-213ENST00000563842 IGSF10Q6WRI0 2623 aa12.93□□□□□ -0.34
CLK3-213ENST00000563842 C21orf140B9A014 251 aa12.92□□□□□ -0.34
CLK3-213ENST00000563842 TMEM150CB9EJG8 249 aa12.92□□□□□ -0.34
CLK3-213ENST00000563842 ATXN7O15265 892 aaPredicted RBP12.92□□□□□ -0.34
CLK3-213ENST00000563842 ZBTB14O43829 449 aa12.92□□□□□ -0.34
CLK3-213ENST00000563842 PSIP1O75475 530 aaKnown RBP12.92□□□□□ -0.34
CLK3-213ENST00000563842 URI1O94763 535 aaPredicted RBP12.92□□□□□ -0.34
CLK3-213ENST00000563842 ITGB2P05107 769 aa12.92□□□□□ -0.34
CLK3-213ENST00000563842 PVRP15151 417 aa12.92□□□□□ -0.34
CLK3-213ENST00000563842 CYP2A7P20853 494 aa12.92□□□□□ -0.34
CLK3-213ENST00000563842 OAS2P29728 719 aaKnown RBP12.92□□□□□ -0.34
CLK3-213ENST00000563842 DLSTP36957 453 aa12.92□□□□□ -0.34
CLK3-213ENST00000563842 BDKRB1P46663 353 aa12.92□□□□□ -0.34
CLK3-213ENST00000563842 ITGA1P56199 1179 aa12.92□□□□□ -0.34
CLK3-213ENST00000563842 MGAT5Q09328 741 aa12.92□□□□□ -0.34
CLK3-213ENST00000563842 SRSF6Q13247 344 aaKnown RBP12.92□□□□□ -0.34
CLK3-213ENST00000563842 ARHGAP19Q14CB8 494 aa12.92□□□□□ -0.34
CLK3-213ENST00000563842 SF1Q15637 639 aaKnown RBP12.92□□□□□ -0.34
CLK3-213ENST00000563842 HP1BP3Q5SSJ5 553 aaPredicted RBP12.92□□□□□ -0.34
CLK3-213ENST00000563842 TEDDM1Q5T9Z0 273 aa12.92□□□□□ -0.34
CLK3-213ENST00000563842 ANKMY2Q8IV38 441 aa12.92□□□□□ -0.34
CLK3-213ENST00000563842 UNC5BQ8IZJ1 945 aa12.92□□□□□ -0.34
CLK3-213ENST00000563842 LINC01555Q8NAE3 123 aa12.92□□□□□ -0.34
CLK3-213ENST00000563842 FBXO15Q8NCQ5 510 aaPredicted RBP12.92□□□□□ -0.34
CLK3-213ENST00000563842 FBXO36Q8NEA4 188 aa12.92□□□□□ -0.34
CLK3-213ENST00000563842 OR9A1PQ8NGU1 263 aa12.92□□□□□ -0.34
CLK3-213ENST00000563842 PYROXD1Q8WU10 500 aa12.92□□□□□ -0.34
CLK3-213ENST00000563842 TRIM44Q96DX7 344 aaPredicted RBP12.92□□□□□ -0.34
CLK3-213ENST00000563842 PWWP2AQ96N64 755 aa12.92□□□□□ -0.34
CLK3-213ENST00000563842 LRFN5Q96NI6 719 aa12.92□□□□□ -0.34
CLK3-213ENST00000563842 CATSPER2Q96P56 530 aa12.92□□□□□ -0.34
CLK3-213ENST00000563842 NRTNQ99748 197 aa12.92□□□□□ -0.34
CLK3-213ENST00000563842 DPH5Q9H2P9 285 aa12.92□□□□□ -0.34
CLK3-213ENST00000563842 LHX9Q9NQ69 397 aa12.92□□□□□ -0.34
CLK3-213ENST00000563842 NSMCE4AQ9NXX6 385 aa12.92□□□□□ -0.34
CLK3-213ENST00000563842 CCDC88CQ9P219 2028 aa12.92□□□□□ -0.34
CLK3-213ENST00000563842 ZFATQ9P243 1243 aa12.92□□□□□ -0.34
CLK3-213ENST00000563842 GALPQ9UBC7 116 aa12.92□□□□□ -0.34
CLK3-213ENST00000563842 AP1M2Q9Y6Q5 423 aa12.92□□□□□ -0.34
CLK3-213ENST00000563842 TARM1B6A8C7 271 aa12.91□□□□□ -0.34
CLK3-213ENST00000563842 E7EQ34 232 aa12.91□□□□□ -0.34
CLK3-213ENST00000563842 TIAF1O95411 115 aa12.91□□□□□ -0.34
CLK3-213ENST00000563842 AHSGP02765 367 aa12.91□□□□□ -0.34
CLK3-213ENST00000563842 NTRK1P04629 796 aa12.91□□□□□ -0.34
CLK3-213ENST00000563842 PEBP1P30086 187 aaKnown RBP12.91□□□□□ -0.34
CLK3-213ENST00000563842 CYP2A13Q16696 494 aa12.91□□□□□ -0.34
CLK3-213ENST00000563842 WHAMMP3Q1A5X7 153 aa12.91□□□□□ -0.34
CLK3-213ENST00000563842 CRTC2Q53ET0 693 aaPredicted RBP12.91□□□□□ -0.34
CLK3-213ENST00000563842 ZC3H12BQ5HYM0 836 aaKnown RBP12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms