RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 CCDC126Q96EE4 140 aa11.5□□□□□ -0.57
LDLR-212ENST00000560467 OLFM1Q99784 485 aa11.5□□□□□ -0.57
LDLR-212ENST00000560467 MRPL57Q9BQC6 102 aaKnown RBP11.5□□□□□ -0.57
LDLR-212ENST00000560467 MRPL46Q9H2W6 279 aaKnown RBP11.5□□□□□ -0.57
LDLR-212ENST00000560467 SEMA6CQ9H3T2 930 aa11.5□□□□□ -0.57
LDLR-212ENST00000560467 MRPL40Q9NQ50 206 aaKnown RBP11.5□□□□□ -0.57
LDLR-212ENST00000560467 FAM53CQ9NYF3 392 aa11.5□□□□□ -0.57
LDLR-212ENST00000560467 CAMSAP3Q9P1Y5 1249 aaPredicted RBP11.5□□□□□ -0.57
LDLR-212ENST00000560467 TMCO1Q9UM00 188 aa11.5□□□□□ -0.57
LDLR-212ENST00000560467 PLLPQ9Y342 182 aa11.5□□□□□ -0.57
LDLR-212ENST00000560467 DGKBQ9Y6T7 804 aa11.5□□□□□ -0.57
LDLR-212ENST00000560467 C17orf113A0A1B0GUU1 675 aa11.49□□□□□ -0.57
LDLR-212ENST00000560467 FOXO6A8MYZ6 492 aa11.49□□□□□ -0.57
LDLR-212ENST00000560467 LIN7AO14910 233 aaPredicted RBP11.49□□□□□ -0.57
LDLR-212ENST00000560467 GRID2O43424 1007 aa11.49□□□□□ -0.57
LDLR-212ENST00000560467 SNX2O60749 519 aa11.49□□□□□ -0.57
LDLR-212ENST00000560467 SMIM24O75264 130 aa11.49□□□□□ -0.57
LDLR-212ENST00000560467 POP7O75817 140 aaKnown RBP11.49□□□□□ -0.57
LDLR-212ENST00000560467 TNFP01375 233 aa11.49□□□□□ -0.57
LDLR-212ENST00000560467 F7P08709 466 aaPredicted RBP11.49□□□□□ -0.57
LDLR-212ENST00000560467 HIST1H2AGP0C0S8 130 aaPredicted RBP11.49□□□□□ -0.57
LDLR-212ENST00000560467 TPBGLP0DKB5 382 aa11.49□□□□□ -0.57
LDLR-212ENST00000560467 CPA3P15088 417 aa11.49□□□□□ -0.57
LDLR-212ENST00000560467 CHN1P15882 459 aa11.49□□□□□ -0.57
LDLR-212ENST00000560467 GLB1P16278 677 aa11.49□□□□□ -0.57
LDLR-212ENST00000560467 HIST1H2ADP20671 130 aa11.49□□□□□ -0.57
LDLR-212ENST00000560467 MAP4P27816 1152 aaKnown RBP11.49□□□□□ -0.57
LDLR-212ENST00000560467 KIAA1024LP59773 190 aa11.49□□□□□ -0.57
LDLR-212ENST00000560467 BOP1Q14137 746 aaKnown RBP11.49□□□□□ -0.57
LDLR-212ENST00000560467 C16orf72Q14CZ0 275 aa11.49□□□□□ -0.57
LDLR-212ENST00000560467 BCL7AQ4VC05 210 aa11.49□□□□□ -0.57
LDLR-212ENST00000560467 C14orf28Q4W4Y0 310 aa11.49□□□□□ -0.57
LDLR-212ENST00000560467 CTSL3PQ5NE16 218 aa11.49□□□□□ -0.57
LDLR-212ENST00000560467 OGFOD3Q6PK18 319 aa11.49□□□□□ -0.57
LDLR-212ENST00000560467 XKR5Q6UX68 686 aa11.49□□□□□ -0.57
LDLR-212ENST00000560467 FRA10AC1Q70Z53 315 aa11.49□□□□□ -0.57
LDLR-212ENST00000560467 ADGRG6Q86SQ4 1221 aa11.49□□□□□ -0.57
LDLR-212ENST00000560467 DTX1Q86Y01 620 aa11.49□□□□□ -0.57
LDLR-212ENST00000560467 GALNT13Q8IUC8 556 aa11.49□□□□□ -0.57
LDLR-212ENST00000560467 NUDCD3Q8IVD9 361 aa11.49□□□□□ -0.57
LDLR-212ENST00000560467 RASGEF1AQ8N9B8 481 aa11.49□□□□□ -0.57
LDLR-212ENST00000560467 SIDT2Q8NBJ9 832 aaKnown RBP11.49□□□□□ -0.57
LDLR-212ENST00000560467 CCL4L1Q8NHW4 92 aa11.49□□□□□ -0.57
LDLR-212ENST00000560467 PMEPA1Q969W9 287 aa11.49□□□□□ -0.57
LDLR-212ENST00000560467 FUBP1Q96AE4 644 aaKnown RBP11.49□□□□□ -0.57
LDLR-212ENST00000560467 LINGO1Q96FE5 620 aa11.49□□□□□ -0.57
LDLR-212ENST00000560467 COX14Q96I36 57 aa11.49□□□□□ -0.57
LDLR-212ENST00000560467 HIST1H2AHQ96KK5 128 aa11.49□□□□□ -0.57
LDLR-212ENST00000560467 HIST1H2AJQ99878 128 aa11.49□□□□□ -0.57
LDLR-212ENST00000560467 H2AFJQ9BTM1 129 aa11.49□□□□□ -0.57
LDLR-212ENST00000560467 DERL2Q9GZP9 239 aa11.49□□□□□ -0.57
LDLR-212ENST00000560467 TMEM168Q9H0V1 697 aa11.49□□□□□ -0.57
LDLR-212ENST00000560467 LRIT1Q9P2V4 623 aa11.49□□□□□ -0.57
LDLR-212ENST00000560467 ATXN10Q9UBB4 475 aa11.49□□□□□ -0.57
LDLR-212ENST00000560467 CNOT6Q9ULM6 557 aaKnown RBP11.49□□□□□ -0.57
LDLR-212ENST00000560467 TMEM98Q9Y2Y6 226 aa11.49□□□□□ -0.57
LDLR-212ENST00000560467 COL12A1Q99715 3063 aa11.49□□□□□ -0.57
LDLR-212ENST00000560467 NBASA2RRP1 2371 aa11.48□□□□□ -0.57
LDLR-212ENST00000560467 FLNCQ14315 2725 aa11.48□□□□□ -0.57
LDLR-212ENST00000560467 MGAT4DA6NG13 374 aa11.48□□□□□ -0.57
LDLR-212ENST00000560467 IQCF5A8MTL0 148 aa11.48□□□□□ -0.57
LDLR-212ENST00000560467 TNFRSF10CO14798 259 aa11.48□□□□□ -0.57
LDLR-212ENST00000560467 BIRC5O15392 142 aa11.48□□□□□ -0.57
LDLR-212ENST00000560467 TYROBPO43914 113 aa11.48□□□□□ -0.57
LDLR-212ENST00000560467 NUAK1O60285 661 aa11.48□□□□□ -0.57
LDLR-212ENST00000560467 SOD1P00441 154 aa11.48□□□□□ -0.57
LDLR-212ENST00000560467 RPN2P04844 631 aa11.48□□□□□ -0.57
LDLR-212ENST00000560467 MYL2P10916 166 aa11.48□□□□□ -0.57
LDLR-212ENST00000560467 CCL4P13236 92 aa11.48□□□□□ -0.57
LDLR-212ENST00000560467 ZNF37AP17032 561 aaPredicted RBP11.48□□□□□ -0.57
LDLR-212ENST00000560467 ZNF8P17098 575 aaPredicted RBP11.48□□□□□ -0.57
LDLR-212ENST00000560467 AOAHP28039 575 aa11.48□□□□□ -0.57
LDLR-212ENST00000560467 ALDH3A1P30838 453 aa11.48□□□□□ -0.57
LDLR-212ENST00000560467 MDH1P40925 334 aaKnown RBP11.48□□□□□ -0.57
LDLR-212ENST00000560467 PRLHRP49683 370 aa11.48□□□□□ -0.57
LDLR-212ENST00000560467 CLCN7P51798 805 aa11.48□□□□□ -0.57
LDLR-212ENST00000560467 PRKAA2P54646 552 aa11.48□□□□□ -0.57
LDLR-212ENST00000560467 MAZP56270 477 aaKnown RBP11.48□□□□□ -0.57
LDLR-212ENST00000560467 AMZ1Q400G9 498 aa11.48□□□□□ -0.57
LDLR-212ENST00000560467 ATG16L1Q676U5 607 aa11.48□□□□□ -0.57
LDLR-212ENST00000560467 CRTC3Q6UUV7 619 aa11.48□□□□□ -0.57
LDLR-212ENST00000560467 ADAMTSL2Q86TH1 951 aa11.48□□□□□ -0.57
LDLR-212ENST00000560467 TRIM74Q86UV6 250 aa11.48□□□□□ -0.57
LDLR-212ENST00000560467 PIM3Q86V86 326 aa11.48□□□□□ -0.57
LDLR-212ENST00000560467 SLC22A9Q8IVM8 553 aa11.48□□□□□ -0.57
LDLR-212ENST00000560467 CFAP206Q8IYR0 622 aa11.48□□□□□ -0.57
LDLR-212ENST00000560467 PELI3Q8N2H9 469 aa11.48□□□□□ -0.57
LDLR-212ENST00000560467 ZSCAN1Q8NBB4 408 aa11.48□□□□□ -0.57
LDLR-212ENST00000560467 ACVR1CQ8NER5 493 aa11.48□□□□□ -0.57
LDLR-212ENST00000560467 OR56A4Q8NGH8 313 aa11.48□□□□□ -0.57
LDLR-212ENST00000560467 KCTD4Q8WVF5 259 aa11.48□□□□□ -0.57
LDLR-212ENST00000560467 NXNL1Q96CM4 212 aa11.48□□□□□ -0.57
LDLR-212ENST00000560467 PDLIM5Q96HC4 596 aaKnown RBP11.48□□□□□ -0.57
LDLR-212ENST00000560467 UBXN10Q96LJ8 280 aa11.48□□□□□ -0.57
LDLR-212ENST00000560467 FAM111AQ96PZ2 611 aa11.48□□□□□ -0.57
LDLR-212ENST00000560467 CMKLR1Q99788 373 aa11.48□□□□□ -0.57
LDLR-212ENST00000560467 CAPS2Q9BXY5 557 aa11.48□□□□□ -0.57
LDLR-212ENST00000560467 DPEP2Q9H4A9 486 aa11.48□□□□□ -0.57
LDLR-212ENST00000560467 TFB2MQ9H5Q4 396 aaKnown RBP11.48□□□□□ -0.57
LDLR-212ENST00000560467 RDH14Q9HBH5 336 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms