RNA–Protein interactions for RNA: ENST00000558739.1

SMAD3-206, Transcript of SMAD family member 3, humanhuman

TSL 3

Gene SMAD3, Length 586 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-206ENST00000558739 PMPCBO75439 489 aa11.32□□□□□ -0.6
SMAD3-206ENST00000558739 RNF8O76064 485 aa11.32□□□□□ -0.6
SMAD3-206ENST00000558739 BMP10O95393 424 aa11.32□□□□□ -0.6
SMAD3-206ENST00000558739 TSPAN12O95859 305 aa11.32□□□□□ -0.6
SMAD3-206ENST00000558739 TPBGLP0DKB5 382 aa11.32□□□□□ -0.6
SMAD3-206ENST00000558739 PYGMP11217 842 aa11.32□□□□□ -0.6
SMAD3-206ENST00000558739 PDHA2P29803 388 aa11.32□□□□□ -0.6
SMAD3-206ENST00000558739 HOXC12P31275 282 aa11.32□□□□□ -0.6
SMAD3-206ENST00000558739 PTGER1P34995 402 aa11.32□□□□□ -0.6
SMAD3-206ENST00000558739 EFNA3P52797 238 aa11.32□□□□□ -0.6
SMAD3-206ENST00000558739 GBE1Q04446 702 aa11.32□□□□□ -0.6
SMAD3-206ENST00000558739 PTPRCAPQ14761 206 aa11.32□□□□□ -0.6
SMAD3-206ENST00000558739 ATP13A4Q4VNC1 1196 aa11.32□□□□□ -0.6
SMAD3-206ENST00000558739 LDLRAP1Q5SW96 308 aa11.32□□□□□ -0.6
SMAD3-206ENST00000558739 CNSTQ6PJW8 725 aa11.32□□□□□ -0.6
SMAD3-206ENST00000558739 NDUFAF7Q7L592 441 aa11.32□□□□□ -0.6
SMAD3-206ENST00000558739 CD163Q86VB7 1156 aa11.32□□□□□ -0.6
SMAD3-206ENST00000558739 ELOA2Q8IYF1 753 aaPredicted RBP11.32□□□□□ -0.6
SMAD3-206ENST00000558739 CFAP206Q8IYR0 622 aa11.32□□□□□ -0.6
SMAD3-206ENST00000558739 LMNTD1Q8N9Z9 388 aa11.32□□□□□ -0.6
SMAD3-206ENST00000558739 SUN3Q8TAQ9 357 aa11.32□□□□□ -0.6
SMAD3-206ENST00000558739 STT3BQ8TCJ2 826 aa11.32□□□□□ -0.6
SMAD3-206ENST00000558739 BRSK1Q8TDC3 778 aa11.32□□□□□ -0.6
SMAD3-206ENST00000558739 HDAC10Q969S8 669 aa11.32□□□□□ -0.6
SMAD3-206ENST00000558739 AGPAT1Q99943 283 aa11.32□□□□□ -0.6
SMAD3-206ENST00000558739 OR52A5Q9H2C5 316 aa11.32□□□□□ -0.6
SMAD3-206ENST00000558739 TFB2MQ9H5Q4 396 aaKnown RBP11.32□□□□□ -0.6
SMAD3-206ENST00000558739 CUTCQ9NTM9 273 aa11.32□□□□□ -0.6
SMAD3-206ENST00000558739 PARVAQ9NVD7 372 aa11.32□□□□□ -0.6
SMAD3-206ENST00000558739 STOX2Q9P2F5 926 aaPredicted RBP11.32□□□□□ -0.6
SMAD3-206ENST00000558739 NXT1Q9UKK6 140 aaKnown RBP11.32□□□□□ -0.6
SMAD3-206ENST00000558739 PLAGL1Q9UM63 463 aa11.32□□□□□ -0.6
SMAD3-206ENST00000558739 DNMT3AQ9Y6K1 912 aaPredicted RBP11.32□□□□□ -0.6
SMAD3-206ENST00000558739 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.32□□□□□ -0.66e-7■■■■□ 21.4
SMAD3-206ENST00000558739 IGHV1-45A0A0A0MS14 117 aa11.31□□□□□ -0.6
SMAD3-206ENST00000558739 MAN1A2O60476 641 aa11.31□□□□□ -0.6
SMAD3-206ENST00000558739 ZRANB2O95218 330 aaKnown RBP eCLIP11.31□□□□□ -0.6
SMAD3-206ENST00000558739 CHRM5P08912 532 aaPredicted RBP11.31□□□□□ -0.6
SMAD3-206ENST00000558739 CHRNB4P30926 498 aa11.31□□□□□ -0.6
SMAD3-206ENST00000558739 SPAM1P38567 509 aa11.31□□□□□ -0.6
SMAD3-206ENST00000558739 LONRF2Q1L5Z9 754 aa11.31□□□□□ -0.6
SMAD3-206ENST00000558739 KRTCAP3Q53RY4 240 aa11.31□□□□□ -0.6
SMAD3-206ENST00000558739 PAMR1Q6UXH9 720 aa11.31□□□□□ -0.6
SMAD3-206ENST00000558739 UNC5AQ6ZN44 842 aa11.31□□□□□ -0.6
SMAD3-206ENST00000558739 HOOK3Q86VS8 718 aa11.31□□□□□ -0.6
SMAD3-206ENST00000558739 BEST3Q8N1M1 668 aa11.31□□□□□ -0.6
SMAD3-206ENST00000558739 LILRB4Q8NHJ6 448 aa11.31□□□□□ -0.6
SMAD3-206ENST00000558739 SPATA22Q8NHS9 363 aa11.31□□□□□ -0.6
SMAD3-206ENST00000558739 DLG3Q92796 817 aa11.31□□□□□ -0.6
SMAD3-206ENST00000558739 TBRG4Q969Z0 631 aaKnown RBP eCLIP11.31□□□□□ -0.62e-6■■■■■ 42.3
SMAD3-206ENST00000558739 MBD6Q96DN6 1003 aa11.31□□□□□ -0.6
SMAD3-206ENST00000558739 KCNJ16Q9NPI9 418 aa11.31□□□□□ -0.6
SMAD3-206ENST00000558739 TAB2Q9NYJ8 693 aa11.31□□□□□ -0.6
SMAD3-206ENST00000558739 AMACRQ9UHK6 382 aa11.31□□□□□ -0.6
SMAD3-206ENST00000558739 PLCL2Q9UPR0 1127 aa11.31□□□□□ -0.6
SMAD3-206ENST00000558739 HEBP2Q9Y5Z4 205 aa11.31□□□□□ -0.6
SMAD3-206ENST00000558739 GLYATL1P3A0A0U1RQE8 302 aa11.3□□□□□ -0.6
SMAD3-206ENST00000558739 ASPDHA6ND91 283 aa11.3□□□□□ -0.6
SMAD3-206ENST00000558739 PRRG2O14669 202 aa11.3□□□□□ -0.6
SMAD3-206ENST00000558739 WFS1O76024 890 aa11.3□□□□□ -0.6
SMAD3-206ENST00000558739 ATE1O95260 518 aa11.3□□□□□ -0.6
SMAD3-206ENST00000558739 ZGLP1P0C6A0 271 aa11.3□□□□□ -0.6
SMAD3-206ENST00000558739 MSH3P20585 1137 aa11.3□□□□□ -0.6
SMAD3-206ENST00000558739 MAGP20916 626 aa11.3□□□□□ -0.6
SMAD3-206ENST00000558739 NR0B1P51843 470 aaKnown RBP11.3□□□□□ -0.6
SMAD3-206ENST00000558739 YBX1P67809 324 aaKnown RBP11.3□□□□□ -0.6
SMAD3-206ENST00000558739 SLC25A11Q02978 314 aaKnown RBP11.3□□□□□ -0.6
SMAD3-206ENST00000558739 SLC10A2Q12908 348 aaPredicted RBP11.3□□□□□ -0.6
SMAD3-206ENST00000558739 IFI16Q16666 785 aaKnown RBP11.3□□□□□ -0.6
SMAD3-206ENST00000558739 TPD52L1Q16890 204 aaPredicted RBP11.3□□□□□ -0.6
SMAD3-206ENST00000558739 DEFB113Q30KQ7 82 aa11.3□□□□□ -0.6
SMAD3-206ENST00000558739 ABHD17BQ5VST6 288 aa11.3□□□□□ -0.6
SMAD3-206ENST00000558739 TIGD7Q6NT04 549 aaPredicted RBP11.3□□□□□ -0.6
SMAD3-206ENST00000558739 SARM1Q6SZW1 724 aa11.3□□□□□ -0.6
SMAD3-206ENST00000558739 CDC20BQ86Y33 519 aa11.3□□□□□ -0.6
SMAD3-206ENST00000558739 TMTC1Q8IUR5 882 aa11.3□□□□□ -0.6
SMAD3-206ENST00000558739 LRRC49Q8IUZ0 686 aa11.3□□□□□ -0.6
SMAD3-206ENST00000558739 GHDCQ8N2G8 530 aa11.3□□□□□ -0.6
SMAD3-206ENST00000558739 MDS2Q8NDY4 140 aa11.3□□□□□ -0.6
SMAD3-206ENST00000558739 OR5AR1Q8NGP9 310 aa11.3□□□□□ -0.6
SMAD3-206ENST00000558739 FATE1Q969F0 183 aa11.3□□□□□ -0.6
SMAD3-206ENST00000558739 IMP4Q96G21 291 aaKnown RBP11.3□□□□□ -0.6
SMAD3-206ENST00000558739 SEC16BQ96JE7 1060 aa11.3□□□□□ -0.6
SMAD3-206ENST00000558739 TSGA13Q96PP4 275 aa11.3□□□□□ -0.6
SMAD3-206ENST00000558739 CHRNA10Q9GZZ6 450 aa11.3□□□□□ -0.6
SMAD3-206ENST00000558739 ZNF395Q9H8N7 513 aaPredicted RBP11.3□□□□□ -0.6
SMAD3-206ENST00000558739 FANCLQ9NW38 375 aa11.3□□□□□ -0.6
SMAD3-206ENST00000558739 PKD1L1Q8TDX9 2849 aa11.3□□□□□ -0.6
SMAD3-206ENST00000558739 TTI1O43156 1089 aa11.29□□□□□ -0.6
SMAD3-206ENST00000558739 KLK8O60259 260 aa11.29□□□□□ -0.6
SMAD3-206ENST00000558739 ATP1A3P13637 1013 aa11.29□□□□□ -0.6
SMAD3-206ENST00000558739 FDXRP22570 491 aa11.29□□□□□ -0.6
SMAD3-206ENST00000558739 CCNCP24863 283 aa11.29□□□□□ -0.6
SMAD3-206ENST00000558739 PCK1P35558 622 aa11.29□□□□□ -0.6
SMAD3-206ENST00000558739 HMGCLP35914 325 aa11.29□□□□□ -0.6
SMAD3-206ENST00000558739 GRIA3P42263 894 aa11.29□□□□□ -0.6
SMAD3-206ENST00000558739 CHRNA4P43681 627 aa11.29□□□□□ -0.6
SMAD3-206ENST00000558739 RAB28P51157 221 aa11.29□□□□□ -0.6
SMAD3-206ENST00000558739 FANCCQ00597 558 aa11.29□□□□□ -0.6
SMAD3-206ENST00000558739 TUBA3CQ13748 450 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms