RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 ZNF682O95780 498 aa12.57□□□□□ -0.4
LDLR-207ENST00000558013 FTH1P02794 183 aa12.57□□□□□ -0.4
LDLR-207ENST00000558013 HTR1BP28222 390 aa12.57□□□□□ -0.4
LDLR-207ENST00000558013 PTPN6P29350 595 aa12.57□□□□□ -0.4
LDLR-207ENST00000558013 LSM3P62310 102 aaKnown RBP12.57□□□□□ -0.4
LDLR-207ENST00000558013 SMARCB1Q12824 385 aa12.57□□□□□ -0.4
LDLR-207ENST00000558013 RAPSNQ13702 412 aa12.57□□□□□ -0.4
LDLR-207ENST00000558013 ATP1A4Q13733 1029 aa12.57□□□□□ -0.4
LDLR-207ENST00000558013 CBX2Q14781 532 aaPredicted RBP12.57□□□□□ -0.4
LDLR-207ENST00000558013 SERPINA13PQ6UXR4 307 aa12.57□□□□□ -0.4
LDLR-207ENST00000558013 Q6ZNX1 250 aa12.57□□□□□ -0.4
LDLR-207ENST00000558013 CYP4Z1Q86W10 505 aa12.57□□□□□ -0.4
LDLR-207ENST00000558013 NXPE1Q8N323 547 aa12.57□□□□□ -0.4
LDLR-207ENST00000558013 SELENOMQ8WWX9 145 aa12.57□□□□□ -0.4
LDLR-207ENST00000558013 FAM120BQ96EK7 910 aaKnown RBP12.57□□□□□ -0.4
LDLR-207ENST00000558013 PLEKHA8Q96JA3 519 aa12.57□□□□□ -0.4
LDLR-207ENST00000558013 APOLD1Q96LR9 279 aa12.57□□□□□ -0.4
LDLR-207ENST00000558013 DPH2Q9BQC3 489 aaPredicted RBP12.57□□□□□ -0.4
LDLR-207ENST00000558013 FUNDC2Q9BWH2 189 aa12.57□□□□□ -0.4
LDLR-207ENST00000558013 ARMC7Q9H6L4 198 aa12.57□□□□□ -0.4
LDLR-207ENST00000558013 C8orf4Q9NR00 106 aa12.57□□□□□ -0.4
LDLR-207ENST00000558013 DNMT3BQ9UBC3 853 aaKnown RBP12.57□□□□□ -0.4
LDLR-207ENST00000558013 INTS6Q9UL03 887 aaKnown RBP12.57□□□□□ -0.4
LDLR-207ENST00000558013 MYOFQ9NZM1 2061 aa12.57□□□□□ -0.4
LDLR-207ENST00000558013 DOCK6Q96HP0 2047 aa12.57□□□□□ -0.4
LDLR-207ENST00000558013 LOC100130705A0A1B0GUX0 176 aa12.57□□□□□ -0.4
LDLR-207ENST00000558013 IFRD1O00458 451 aaPredicted RBP12.57□□□□□ -0.4
LDLR-207ENST00000558013 PRRG1O14668 218 aa12.57□□□□□ -0.4
LDLR-207ENST00000558013 IL6P05231 212 aa12.57□□□□□ -0.4
LDLR-207ENST00000558013 CCR3P51677 355 aa12.57□□□□□ -0.4
LDLR-207ENST00000558013 ISL1P61371 349 aa12.57□□□□□ -0.4
LDLR-207ENST00000558013 LRRC66Q68CR7 880 aa12.57□□□□□ -0.4
LDLR-207ENST00000558013 OR4F3Q6IEY1 312 aa12.57□□□□□ -0.4
LDLR-207ENST00000558013 NEK5Q6P3R8 708 aa12.57□□□□□ -0.4
LDLR-207ENST00000558013 DOK6Q6PKX4 331 aa12.57□□□□□ -0.4
LDLR-207ENST00000558013 CRTC1Q6UUV9 634 aa12.57□□□□□ -0.4
LDLR-207ENST00000558013 CD99L2Q8TCZ2 262 aa12.57□□□□□ -0.4
LDLR-207ENST00000558013 C2orf15Q8WU43 125 aaKnown RBP12.57□□□□□ -0.4
LDLR-207ENST00000558013 ERLEC1Q96DZ1 483 aa12.57□□□□□ -0.4
LDLR-207ENST00000558013 ELAC1Q9H777 363 aaKnown RBP12.57□□□□□ -0.4
LDLR-207ENST00000558013 hCG_2039718K7EN88 272 aa12.56□□□□□ -0.4
LDLR-207ENST00000558013 PQBP1O60828 265 aaKnown RBP12.56□□□□□ -0.4
LDLR-207ENST00000558013 CLDN9O95484 217 aa12.56□□□□□ -0.4
LDLR-207ENST00000558013 LHCGRP22888 699 aa12.56□□□□□ -0.4
LDLR-207ENST00000558013 FMO3P31513 532 aa12.56□□□□□ -0.4
LDLR-207ENST00000558013 GZMMP51124 257 aa12.56□□□□□ -0.4
LDLR-207ENST00000558013 C21orf59P57076 290 aa12.56□□□□□ -0.4
LDLR-207ENST00000558013 RPS14P62263 151 aaKnown RBP12.56□□□□□ -0.4
LDLR-207ENST00000558013 GTF2H3Q13889 308 aa12.56□□□□□ -0.4
LDLR-207ENST00000558013 SMN1Q16637 294 aaKnown RBP12.56□□□□□ -0.4
LDLR-207ENST00000558013 ZNF648Q5T619 568 aaPredicted RBP12.56□□□□□ -0.4
LDLR-207ENST00000558013 ADNP2Q6IQ32 1131 aa12.56□□□□□ -0.4
LDLR-207ENST00000558013 VTCN1Q7Z7D3 282 aa12.56□□□□□ -0.4
LDLR-207ENST00000558013 DCP2Q8IU60 420 aaKnown RBP12.56□□□□□ -0.4
LDLR-207ENST00000558013 BBS7Q8IWZ6 715 aa12.56□□□□□ -0.4
LDLR-207ENST00000558013 SMYD1Q8NB12 490 aa12.56□□□□□ -0.4
LDLR-207ENST00000558013 CDC26Q8NHZ8 85 aa12.56□□□□□ -0.4
LDLR-207ENST00000558013 USP7Q93009 1102 aa12.56□□□□□ -0.4
LDLR-207ENST00000558013 NTMT1Q9BV86 223 aa12.56□□□□□ -0.4
LDLR-207ENST00000558013 BBS2Q9BXC9 721 aa12.56□□□□□ -0.4
LDLR-207ENST00000558013 SLC22A14Q9Y267 594 aa12.56□□□□□ -0.4
LDLR-207ENST00000558013 MYO7AQ13402 2215 aa12.56□□□□□ -0.4
LDLR-207ENST00000558013 SCN5AQ14524 2016 aa12.56□□□□□ -0.4
LDLR-207ENST00000558013 TRBV5-4A0A0C4DH59 114 aa12.56□□□□□ -0.4
LDLR-207ENST00000558013 GRXCR2A6NFK2 248 aa12.56□□□□□ -0.4
LDLR-207ENST00000558013 TRIM64BA6NI03 449 aa12.56□□□□□ -0.4
LDLR-207ENST00000558013 SLC28A1O00337 649 aa12.56□□□□□ -0.4
LDLR-207ENST00000558013 EBLN1P0CF75 366 aa12.56□□□□□ -0.4
LDLR-207ENST00000558013 RPS3P23396 243 aaKnown RBP eCLIP12.56□□□□□ -0.41e-7■■□□□ 12
LDLR-207ENST00000558013 SP3Q02447 781 aa12.56□□□□□ -0.4
LDLR-207ENST00000558013 LMAN2Q12907 356 aa12.56□□□□□ -0.4
LDLR-207ENST00000558013 MTA1Q13330 715 aa12.56□□□□□ -0.4
LDLR-207ENST00000558013 BOP1Q14137 746 aaKnown RBP12.56□□□□□ -0.4
LDLR-207ENST00000558013 PTCHD3Q3KNS1 767 aa12.56□□□□□ -0.4
LDLR-207ENST00000558013 GPR149Q86SP6 731 aa12.56□□□□□ -0.4
LDLR-207ENST00000558013 BEND7Q8N7W2 519 aaPredicted RBP12.56□□□□□ -0.4
LDLR-207ENST00000558013 SLC43A3Q8NBI5 491 aa12.56□□□□□ -0.4
LDLR-207ENST00000558013 LEMD2Q8NC56 503 aa12.56□□□□□ -0.4
LDLR-207ENST00000558013 OR7A2PQ8NGA2 310 aa12.56□□□□□ -0.4
LDLR-207ENST00000558013 FKBP10Q96AY3 582 aa12.56□□□□□ -0.4
LDLR-207ENST00000558013 PRDM8Q9NQV8 689 aa12.56□□□□□ -0.4
LDLR-207ENST00000558013 XIRP2A4UGR9 3374 aa12.56□□□□□ -0.4
LDLR-207ENST00000558013 RANBP2P49792 3224 aaKnown RBP12.56□□□□□ -0.4
LDLR-207ENST00000558013 SDC1P18827 310 aa12.55□□□□□ -0.4
LDLR-207ENST00000558013 S100A3P33764 101 aa12.55□□□□□ -0.4
LDLR-207ENST00000558013 TTKP33981 857 aa12.55□□□□□ -0.4
LDLR-207ENST00000558013 MAP2K4P45985 399 aa12.55□□□□□ -0.4
LDLR-207ENST00000558013 GRSF1Q12849 480 aaKnown RBP eCLIP12.55□□□□□ -0.4
LDLR-207ENST00000558013 ZNF829Q3KNS6 432 aaPredicted RBP12.55□□□□□ -0.4
LDLR-207ENST00000558013 C16orf87Q6PH81 154 aa12.55□□□□□ -0.4
LDLR-207ENST00000558013 SLC16A12Q6ZSM3 486 aa12.55□□□□□ -0.4
LDLR-207ENST00000558013 ZNF555Q8NEP9 628 aa12.55□□□□□ -0.4
LDLR-207ENST00000558013 IGSF21Q96ID5 467 aa12.55□□□□□ -0.4
LDLR-207ENST00000558013 CCDC138Q96M89 665 aa12.55□□□□□ -0.4
LDLR-207ENST00000558013 CPPED1Q9BRF8 314 aaPredicted RBP12.55□□□□□ -0.4
LDLR-207ENST00000558013 YTHDF1Q9BYJ9 559 aaKnown RBP12.55□□□□□ -0.4
LDLR-207ENST00000558013 TMPRSS11EQ9UL52 423 aa12.55□□□□□ -0.4
LDLR-207ENST00000558013 MYO1GB0I1T2 1018 aa12.55□□□□□ -0.4
LDLR-207ENST00000558013 YY2O15391 372 aa12.55□□□□□ -0.4
LDLR-207ENST00000558013 BCAS1O75363 584 aaPredicted RBP12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms