RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 SERPINB1P30740 379 aa12.06□□□□□ -0.48
LDLR-205ENST00000557933 AKT1P31749 480 aa12.06□□□□□ -0.48
LDLR-205ENST00000557933 GRK5P34947 590 aa12.06□□□□□ -0.48
LDLR-205ENST00000557933 KRT20P35900 424 aa12.06□□□□□ -0.48
LDLR-205ENST00000557933 IDH2P48735 452 aaKnown RBP12.06□□□□□ -0.48
LDLR-205ENST00000557933 ZNF140P52738 457 aaPredicted RBP12.06□□□□□ -0.48
LDLR-205ENST00000557933 MRPS6P82932 125 aaKnown RBP12.06□□□□□ -0.48
LDLR-205ENST00000557933 VLDLRP98155 873 aa12.06□□□□□ -0.48
LDLR-205ENST00000557933 COL9A2Q14055 689 aaPredicted RBP12.06□□□□□ -0.48
LDLR-205ENST00000557933 ZNF691Q5VV52 312 aa12.06□□□□□ -0.48
LDLR-205ENST00000557933 STEAP3Q658P3 488 aa12.06□□□□□ -0.48
LDLR-205ENST00000557933 ANGPTL8Q6UXH0 198 aa12.06□□□□□ -0.48
LDLR-205ENST00000557933 BEND5Q7L4P6 421 aa12.06□□□□□ -0.48
LDLR-205ENST00000557933 DENND1CQ8IV53 801 aa12.06□□□□□ -0.48
LDLR-205ENST00000557933 ZNF683Q8IZ20 524 aa12.06□□□□□ -0.48
LDLR-205ENST00000557933 THEM5Q8N1Q8 247 aa12.06□□□□□ -0.48
LDLR-205ENST00000557933 ULK4Q96C45 1275 aa12.06□□□□□ -0.48
LDLR-205ENST00000557933 Q96MT0 163 aa12.06□□□□□ -0.48
LDLR-205ENST00000557933 ASPSCR1Q9BZE9 553 aa12.06□□□□□ -0.48
LDLR-205ENST00000557933 NDEL1Q9GZM8 345 aa12.06□□□□□ -0.48
LDLR-205ENST00000557933 QPCTLQ9NXS2 382 aa12.06□□□□□ -0.48
LDLR-205ENST00000557933 WWOXQ9NZC7 414 aa12.06□□□□□ -0.48
LDLR-205ENST00000557933 ORC6Q9Y5N6 252 aa12.06□□□□□ -0.48
LDLR-205ENST00000557933 FRMPD3Q5JV73 1810 aa12.06□□□□□ -0.48
LDLR-205ENST00000557933 RANBP2P49792 3224 aaKnown RBP12.05□□□□□ -0.48
LDLR-205ENST00000557933 FFAR2O15552 330 aa12.05□□□□□ -0.48
LDLR-205ENST00000557933 TULP3O75386 442 aa12.05□□□□□ -0.48
LDLR-205ENST00000557933 KCNK2O95069 426 aa12.05□□□□□ -0.48
LDLR-205ENST00000557933 CPSF4O95639 269 aaKnown RBP12.05□□□□□ -0.48
LDLR-205ENST00000557933 NDST3O95803 873 aa12.05□□□□□ -0.48
LDLR-205ENST00000557933 CYP11A1P05108 521 aa12.05□□□□□ -0.48
LDLR-205ENST00000557933 NUDT7P0C024 238 aa12.05□□□□□ -0.48
LDLR-205ENST00000557933 CYP2C18P33260 490 aa12.05□□□□□ -0.48
LDLR-205ENST00000557933 PRMT2P55345 433 aa12.05□□□□□ -0.48
LDLR-205ENST00000557933 KCNC4Q03721 635 aa12.05□□□□□ -0.48
LDLR-205ENST00000557933 ATAD3BQ5T9A4 648 aa12.05□□□□□ -0.48
LDLR-205ENST00000557933 PTRHD1Q6GMV3 140 aaKnown RBP12.05□□□□□ -0.48
LDLR-205ENST00000557933 OR4F3Q6IEY1 312 aa12.05□□□□□ -0.48
LDLR-205ENST00000557933 FAM180BQ6P0A1 224 aa12.05□□□□□ -0.48
LDLR-205ENST00000557933 CCDC103Q8IW40 242 aa12.05□□□□□ -0.48
LDLR-205ENST00000557933 COLGALT2Q8IYK4 626 aa12.05□□□□□ -0.48
LDLR-205ENST00000557933 NLGN4XQ8N0W4 816 aa12.05□□□□□ -0.48
LDLR-205ENST00000557933 PIK3C3Q8NEB9 887 aa12.05□□□□□ -0.48
LDLR-205ENST00000557933 STARD8Q92502 1023 aa12.05□□□□□ -0.48
LDLR-205ENST00000557933 EID2BQ96D98 161 aa12.05□□□□□ -0.48
LDLR-205ENST00000557933 PKMYT1Q99640 499 aa12.05□□□□□ -0.48
LDLR-205ENST00000557933 TMEM248Q9NWD8 314 aa12.05□□□□□ -0.48
LDLR-205ENST00000557933 KIAA1522Q9P206 1035 aaPredicted RBP12.05□□□□□ -0.48
LDLR-205ENST00000557933 TLR6Q9Y2C9 796 aa12.05□□□□□ -0.48
LDLR-205ENST00000557933 K7ERQ8 282 aa12.05□□□□□ -0.48
LDLR-205ENST00000557933 HLA-DPA1P20036 260 aa12.05□□□□□ -0.48
LDLR-205ENST00000557933 AZGP1P25311 298 aaKnown RBP12.05□□□□□ -0.48
LDLR-205ENST00000557933 TRAF3Q13114 568 aa12.05□□□□□ -0.48
LDLR-205ENST00000557933 PDE12Q6L8Q7 609 aaKnown RBP12.05□□□□□ -0.48
LDLR-205ENST00000557933 ADGRG2Q8IZP9 1017 aa12.05□□□□□ -0.48
LDLR-205ENST00000557933 LMNTD1Q8N9Z9 388 aa12.05□□□□□ -0.48
LDLR-205ENST00000557933 ZBTB18Q99592 522 aa12.05□□□□□ -0.48
LDLR-205ENST00000557933 AP5M1Q9H0R1 490 aa12.05□□□□□ -0.48
LDLR-205ENST00000557933 DCSTAMPQ9H295 470 aa12.05□□□□□ -0.48
LDLR-205ENST00000557933 DSN1Q9H410 356 aa12.05□□□□□ -0.48
LDLR-205ENST00000557933 RAI2Q9Y5P3 530 aa12.05□□□□□ -0.48
LDLR-205ENST00000557933 TTC34A8MYJ7 566 aa12.04□□□□□ -0.48
LDLR-205ENST00000557933 EFCAB9A8MZ26 197 aa12.04□□□□□ -0.48
LDLR-205ENST00000557933 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.04□□□□□ -0.48
LDLR-205ENST00000557933 S100BP04271 92 aaPredicted RBP12.04□□□□□ -0.48
LDLR-205ENST00000557933 SLC26A3P40879 764 aa12.04□□□□□ -0.48
LDLR-205ENST00000557933 SUOXP51687 545 aa12.04□□□□□ -0.48
LDLR-205ENST00000557933 COPZ1P61923 177 aa12.04□□□□□ -0.48
LDLR-205ENST00000557933 DGUOKQ16854 277 aa12.04□□□□□ -0.48
LDLR-205ENST00000557933 DESI1Q6ICB0 168 aa12.04□□□□□ -0.48
LDLR-205ENST00000557933 CCDC117Q8IWD4 279 aaPredicted RBP12.04□□□□□ -0.48
LDLR-205ENST00000557933 OR6Q1Q8NGQ2 317 aa12.04□□□□□ -0.48
LDLR-205ENST00000557933 SLC39A13Q96H72 371 aa12.04□□□□□ -0.48
LDLR-205ENST00000557933 CHCHD6Q9BRQ6 235 aa12.04□□□□□ -0.48
LDLR-205ENST00000557933 BTBD2Q9BX70 525 aa12.04□□□□□ -0.48
LDLR-205ENST00000557933 BBS2Q9BXC9 721 aa12.04□□□□□ -0.48
LDLR-205ENST00000557933 REXO4Q9GZR2 422 aaKnown RBP12.04□□□□□ -0.48
LDLR-205ENST00000557933 TNKS2Q9H2K2 1166 aa12.04□□□□□ -0.48
LDLR-205ENST00000557933 FCF1Q9Y324 198 aaKnown RBP12.04□□□□□ -0.48
LDLR-205ENST00000557933 SAMHD1Q9Y3Z3 626 aaKnown RBP12.04□□□□□ -0.48
LDLR-205ENST00000557933 DNMT3AQ9Y6K1 912 aaPredicted RBP12.04□□□□□ -0.48
LDLR-205ENST00000557933 PIKFYVEQ9Y2I7 2098 aa12.04□□□□□ -0.48
LDLR-205ENST00000557933 C2orf81A6NN90 581 aa12.04□□□□□ -0.48
LDLR-205ENST00000557933 RFXAPO00287 272 aa12.04□□□□□ -0.48
LDLR-205ENST00000557933 SNPHO15079 494 aa12.04□□□□□ -0.48
LDLR-205ENST00000557933 INSIG1O15503 277 aa12.04□□□□□ -0.48
LDLR-205ENST00000557933 TAPBPO15533 448 aa12.04□□□□□ -0.48
LDLR-205ENST00000557933 PCDHGA12O60330 932 aa12.04□□□□□ -0.48
LDLR-205ENST00000557933 VPS4BO75351 444 aa12.04□□□□□ -0.48
LDLR-205ENST00000557933 C7P10643 843 aa12.04□□□□□ -0.48
LDLR-205ENST00000557933 GADD45AP24522 165 aa12.04□□□□□ -0.48
LDLR-205ENST00000557933 HOXD9P28356 352 aaPredicted RBP12.04□□□□□ -0.48
LDLR-205ENST00000557933 TGM4P49221 684 aa12.04□□□□□ -0.48
LDLR-205ENST00000557933 ALDH7A1P49419 539 aaKnown RBP12.04□□□□□ -0.48
LDLR-205ENST00000557933 SBSNQ6UWP8 590 aa12.04□□□□□ -0.48
LDLR-205ENST00000557933 ADHFE1Q8IWW8 467 aa12.04□□□□□ -0.48
LDLR-205ENST00000557933 TTC29Q8NA56 475 aaPredicted RBP12.04□□□□□ -0.48
LDLR-205ENST00000557933 APOLD1Q96LR9 279 aa12.04□□□□□ -0.48
LDLR-205ENST00000557933 BEX2Q9BXY8 128 aa12.04□□□□□ -0.48
LDLR-205ENST00000557933 PARVBQ9HBI1 364 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms