RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 PRR11Q96HE9 360 aaPredicted RBP13.87□□□□□ -0.19
USP3-205ENST00000557884 CD180Q99467 661 aa13.87□□□□□ -0.19
USP3-205ENST00000557884 PAFAH2Q99487 392 aa13.87□□□□□ -0.19
USP3-205ENST00000557884 RAB11FIP5Q9BXF6 653 aa13.87□□□□□ -0.19
USP3-205ENST00000557884 EPB41L4BQ9H329 900 aa13.87□□□□□ -0.19
USP3-205ENST00000557884 ZNF768Q9H5H4 540 aaKnown RBP13.87□□□□□ -0.19
USP3-205ENST00000557884 LNPEPQ9UIQ6 1025 aa13.87□□□□□ -0.19
USP3-205ENST00000557884 PCDHGA8Q9Y5G5 932 aa13.87□□□□□ -0.19
USP3-205ENST00000557884 UNC13CQ8NB66 2214 aa13.87□□□□□ -0.19
USP3-205ENST00000557884 KNTC1P50748 2209 aa13.86□□□□□ -0.19
USP3-205ENST00000557884 EXOC1LA0A1B0GW35 172 aa13.86□□□□□ -0.19
USP3-205ENST00000557884 SLC9B1P1A6NJY1 282 aa13.86□□□□□ -0.19
USP3-205ENST00000557884 PRAMEF10O60809 474 aa13.86□□□□□ -0.19
USP3-205ENST00000557884 FGF3P11487 239 aaPredicted RBP13.86□□□□□ -0.19
USP3-205ENST00000557884 CYP2A7P20853 494 aa13.86□□□□□ -0.19
USP3-205ENST00000557884 MSH2P43246 934 aa13.86□□□□□ -0.19
USP3-205ENST00000557884 ARL4DP49703 201 aa13.86□□□□□ -0.19
USP3-205ENST00000557884 RAB10P61026 200 aa13.86□□□□□ -0.19
USP3-205ENST00000557884 PHKG1Q16816 387 aa13.86□□□□□ -0.19
USP3-205ENST00000557884 ANKS6Q68DC2 871 aa13.86□□□□□ -0.19
USP3-205ENST00000557884 RAPH1Q70E73 1250 aa13.86□□□□□ -0.19
USP3-205ENST00000557884 PPFIBP2Q8ND30 876 aa13.86□□□□□ -0.19
USP3-205ENST00000557884 KLHL6Q8WZ60 621 aa13.86□□□□□ -0.19
USP3-205ENST00000557884 RNF31Q96EP0 1072 aa13.86□□□□□ -0.19
USP3-205ENST00000557884 OR2A14Q96R47 310 aa13.86□□□□□ -0.19
USP3-205ENST00000557884 CTRCQ99895 268 aa13.86□□□□□ -0.19
USP3-205ENST00000557884 SLC12A9Q9BXP2 914 aa13.86□□□□□ -0.19
USP3-205ENST00000557884 CCDC86Q9H6F5 360 aaKnown RBP13.86□□□□□ -0.19
USP3-205ENST00000557884 POPDC3Q9HBV1 291 aa13.86□□□□□ -0.19
USP3-205ENST00000557884 SYTL2Q9HCH5 934 aa13.86□□□□□ -0.19
USP3-205ENST00000557884 ABCF3Q9NUQ8 709 aa13.86□□□□□ -0.19
USP3-205ENST00000557884 SOHLH2Q9NX45 425 aa13.86□□□□□ -0.19
USP3-205ENST00000557884 SPATA7Q9P0W8 599 aa13.86□□□□□ -0.19
USP3-205ENST00000557884 PDE10AQ9Y233 779 aa13.86□□□□□ -0.19
USP3-205ENST00000557884 IKBKGQ9Y6K9 419 aa13.86□□□□□ -0.19
USP3-205ENST00000557884 HMX2A2RU54 273 aa13.85□□□□□ -0.19
USP3-205ENST00000557884 CDC7O00311 574 aa13.85□□□□□ -0.19
USP3-205ENST00000557884 TOX3O15405 576 aaPredicted RBP13.85□□□□□ -0.19
USP3-205ENST00000557884 WISP3O95389 354 aaPredicted RBP13.85□□□□□ -0.19
USP3-205ENST00000557884 SLC16A8O95907 504 aa13.85□□□□□ -0.19
USP3-205ENST00000557884 CCDC166P0CW27 439 aa13.85□□□□□ -0.19
USP3-205ENST00000557884 ST6GAL1P15907 406 aa13.85□□□□□ -0.19
USP3-205ENST00000557884 NELFEP18615 380 aaKnown RBP13.85□□□□□ -0.19
USP3-205ENST00000557884 PSMB5P28074 263 aa13.85□□□□□ -0.19
USP3-205ENST00000557884 PNLIPRP1P54315 467 aa13.85□□□□□ -0.19
USP3-205ENST00000557884 FOXM1Q08050 763 aa13.85□□□□□ -0.19
USP3-205ENST00000557884 SP140Q13342 867 aa13.85□□□□□ -0.19
USP3-205ENST00000557884 SLC29A2Q14542 456 aa13.85□□□□□ -0.19
USP3-205ENST00000557884 NAA30Q147X3 362 aaPredicted RBP13.85□□□□□ -0.19
USP3-205ENST00000557884 KIR2DS3Q14952 304 aa13.85□□□□□ -0.19
USP3-205ENST00000557884 ZKSCAN8Q15776 578 aaPredicted RBP13.85□□□□□ -0.19
USP3-205ENST00000557884 CYP2A13Q16696 494 aa13.85□□□□□ -0.19
USP3-205ENST00000557884 SUSD1Q6UWL2 747 aa13.85□□□□□ -0.19
USP3-205ENST00000557884 SYTL1Q8IYJ3 562 aa13.85□□□□□ -0.19
USP3-205ENST00000557884 FBXO15Q8NCQ5 510 aaPredicted RBP13.85□□□□□ -0.19
USP3-205ENST00000557884 FLVCR1-AS1Q8TAF5 88 aa13.85□□□□□ -0.19
USP3-205ENST00000557884 MCOLN3Q8TDD5 553 aa13.85□□□□□ -0.19
USP3-205ENST00000557884 ZNF480Q8WV37 535 aa13.85□□□□□ -0.19
USP3-205ENST00000557884 UBLCP1Q8WVY7 318 aaPredicted RBP13.85□□□□□ -0.19
USP3-205ENST00000557884 USP7Q93009 1102 aa13.85□□□□□ -0.19
USP3-205ENST00000557884 PDLIM5Q96HC4 596 aaKnown RBP13.85□□□□□ -0.19
USP3-205ENST00000557884 SLC46A1Q96NT5 459 aa13.85□□□□□ -0.19
USP3-205ENST00000557884 PARVBQ9HBI1 364 aa13.85□□□□□ -0.19
USP3-205ENST00000557884 APMAPQ9HDC9 416 aa13.85□□□□□ -0.19
USP3-205ENST00000557884 ASCL3Q9NQ33 180 aa13.85□□□□□ -0.19
USP3-205ENST00000557884 C1GALT1Q9NS00 363 aa13.85□□□□□ -0.19
USP3-205ENST00000557884 SIDT1Q9NXL6 827 aaKnown RBP13.85□□□□□ -0.19
USP3-205ENST00000557884 SLC39A1Q9NY26 324 aa13.85□□□□□ -0.19
USP3-205ENST00000557884 SEMA5BQ9P283 1151 aa13.85□□□□□ -0.19
USP3-205ENST00000557884 KLHL20Q9Y2M5 609 aa13.85□□□□□ -0.19
USP3-205ENST00000557884 LAMA5O15230 3695 aa13.84□□□□□ -0.19
USP3-205ENST00000557884 A0A0J9YY10 115 aa13.84□□□□□ -0.19
USP3-205ENST00000557884 PABPN1LA6NDY0 278 aaKnown RBP13.84□□□□□ -0.19
USP3-205ENST00000557884 B4E171 279 aa13.84□□□□□ -0.19
USP3-205ENST00000557884 SLC16A5O15375 505 aa13.84□□□□□ -0.19
USP3-205ENST00000557884 ZBTB11O95625 1053 aaPredicted RBP13.84□□□□□ -0.19
USP3-205ENST00000557884 EBLN1P0CF75 366 aa13.84□□□□□ -0.19
USP3-205ENST00000557884 SLC35E2BP0CK96 405 aa13.84□□□□□ -0.19
USP3-205ENST00000557884 FOLR1P15328 257 aa13.84□□□□□ -0.19
USP3-205ENST00000557884 CRABP2P29373 138 aa13.84□□□□□ -0.19
USP3-205ENST00000557884 OAS2P29728 719 aaKnown RBP13.84□□□□□ -0.19
USP3-205ENST00000557884 TSPAN7P41732 249 aa13.84□□□□□ -0.19
USP3-205ENST00000557884 HSD11B2P80365 405 aa13.84□□□□□ -0.19
USP3-205ENST00000557884 CSHL1Q14406 222 aa13.84□□□□□ -0.19
USP3-205ENST00000557884 TSNQ15631 228 aaKnown RBP13.84□□□□□ -0.19
USP3-205ENST00000557884 SF1Q15637 639 aaKnown RBP13.84□□□□□ -0.19
USP3-205ENST00000557884 SBSNQ6UWP8 590 aa13.84□□□□□ -0.19
USP3-205ENST00000557884 LSMEM2Q8N112 164 aa13.84□□□□□ -0.19
USP3-205ENST00000557884 BMPERQ8N8U9 685 aa13.84□□□□□ -0.19
USP3-205ENST00000557884 DCAKDQ8WVC6 231 aa13.84□□□□□ -0.19
USP3-205ENST00000557884 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.84□□□□□ -0.19
USP3-205ENST00000557884 ZCCHC14Q8WYQ9 949 aaKnown RBP13.84□□□□□ -0.19
USP3-205ENST00000557884 SMPDL3AQ92484 453 aa13.84□□□□□ -0.19
USP3-205ENST00000557884 SLC41A2Q96JW4 573 aa13.84□□□□□ -0.19
USP3-205ENST00000557884 TRAPPC9Q96Q05 1148 aa13.84□□□□□ -0.19
USP3-205ENST00000557884 MIPEPQ99797 713 aa13.84□□□□□ -0.19
USP3-205ENST00000557884 ACAT2Q9BWD1 397 aa13.84□□□□□ -0.19
USP3-205ENST00000557884 PARD6BQ9BYG5 372 aa13.84□□□□□ -0.19
USP3-205ENST00000557884 PITPNM3Q9BZ71 974 aa13.84□□□□□ -0.19
USP3-205ENST00000557884 SNX15Q9NRS6 342 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms