RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 LOC390937A0A1W2PQ73 354 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 NOBOXO60393 691 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 SELENOFO60613 162 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 WDR47O94967 919 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 MPC2O95563 127 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 CBX7O95931 251 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 MPOP05164 745 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 S100A9P06702 114 aaKnown RBP13.51□□□□□ -0.25
SHMT2-226ENST00000556825 APOA4P06727 396 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 HEXBP07686 556 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 NCK1P16333 377 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 SLC6A2P23975 617 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 ITGB8P26012 769 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 KCNJ5P48544 419 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 LIG4P49917 911 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 NAGLUP54802 743 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 NOMO3P69849 1222 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 PIGHQ14442 188 aaPredicted RBP13.51□□□□□ -0.25
SHMT2-226ENST00000556825 ZC3H12BQ5HYM0 836 aaKnown RBP13.51□□□□□ -0.25
SHMT2-226ENST00000556825 ATRAIDQ6UW56 229 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 CCDC149Q6ZUS6 474 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 IKBIPQ70UQ0 350 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 CMC1Q7Z7K0 106 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 AMIGO3Q86WK7 504 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 DCP1BQ8IZD4 617 aaKnown RBP13.51□□□□□ -0.25
SHMT2-226ENST00000556825 STPG2Q8N412 459 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 STX19Q8N4C7 294 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 SETD9Q8NE22 299 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 OR1M1Q8NGA1 313 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 ZNF384Q8TF68 577 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 COA7Q96BR5 231 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 CCDC126Q96EE4 140 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 QRFPRQ96P65 431 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 FAM126AQ9BYI3 521 aaPredicted RBP13.51□□□□□ -0.25
SHMT2-226ENST00000556825 SMURF1Q9HCE7 757 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 C3orf18Q9UK00 162 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 ADAM28Q9UKQ2 775 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 MINPP1Q9UNW1 487 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 SIPA1L1O43166 1804 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 A0A0G2JPF8 293 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 LOC100506127A0A0U1RQW1 187 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 USP17L3A6NCW0 530 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 USP17L4A6NCW7 530 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 HNRNPCL3B7ZW38 293 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 BCKDKO14874 412 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 MMP20O60882 483 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 NIPSNAP2O75323 286 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 DHFRP00374 187 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 APRTP07741 180 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 ZNF806P0C7X5 589 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 HNRNPCL4P0DMR1 293 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 KDELR1P24390 212 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 PCP4P48539 62 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 CLK2P49760 499 aaKnown RBP13.51□□□□□ -0.25
SHMT2-226ENST00000556825 GSK3BP49841 420 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 ZNF143P52747 638 aaPredicted RBP13.51□□□□□ -0.25
SHMT2-226ENST00000556825 SPIRE1Q08AE8 756 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 GPR17Q13304 367 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 KLHL17Q6TDP4 642 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 TMPRSS11AQ6ZMR5 421 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 FAM196AQ6ZSG2 479 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 FAM92BQ6ZTR7 304 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 CHMP1BQ7LBR1 199 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 USP17L1Q7RTZ2 530 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 RFX6Q8HWS3 928 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 FAM178BQ8IXR5 827 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 MS4A15Q8N5U1 240 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 TTLL6Q8N841 843 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 CEP76Q8TAP6 659 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 SFT2D1Q8WV19 159 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 VAT1Q99536 393 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 WNT5BQ9H1J7 359 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 PIGUQ9H490 435 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 ZNF768Q9H5H4 540 aaKnown RBP13.51□□□□□ -0.25
SHMT2-226ENST00000556825 RNF167Q9H6Y7 350 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 NIT2Q9NQR4 276 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 ABCB8Q9NUT2 735 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 COQ4Q9Y3A0 265 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 PCDHB14Q9Y5E9 798 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 PCDHA9Q9Y5H5 950 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 CACNA1SQ13698 1873 aa13.51□□□□□ -0.25
SHMT2-226ENST00000556825 TMEM233B4DJY2 109 aa13.5□□□□□ -0.25
SHMT2-226ENST00000556825 PCDH17O14917 1159 aa13.5□□□□□ -0.25
SHMT2-226ENST00000556825 CABYRO75952 493 aa13.5□□□□□ -0.25
SHMT2-226ENST00000556825 CTPS1P17812 591 aa13.5□□□□□ -0.25
SHMT2-226ENST00000556825 AZGP1P25311 298 aaKnown RBP13.5□□□□□ -0.25
SHMT2-226ENST00000556825 GRK5P34947 590 aa13.5□□□□□ -0.25
SHMT2-226ENST00000556825 SPAM1P38567 509 aa13.5□□□□□ -0.25
SHMT2-226ENST00000556825 ATP4BP51164 291 aa13.5□□□□□ -0.25
SHMT2-226ENST00000556825 RPS8P62241 208 aaKnown RBP13.5□□□□□ -0.25
SHMT2-226ENST00000556825 ABATP80404 500 aa13.5□□□□□ -0.25
SHMT2-226ENST00000556825 FRG1Q14331 258 aaKnown RBP13.5□□□□□ -0.25
SHMT2-226ENST00000556825 TRAM2Q15035 370 aa13.5□□□□□ -0.25
SHMT2-226ENST00000556825 TEX30Q5JUR7 227 aa13.5□□□□□ -0.25
SHMT2-226ENST00000556825 SAXO2Q658L1 398 aa13.5□□□□□ -0.25
SHMT2-226ENST00000556825 USP17L6PQ6QN14 398 aa13.5□□□□□ -0.25
SHMT2-226ENST00000556825 ZNF534Q76KX8 674 aa13.5□□□□□ -0.25
SHMT2-226ENST00000556825 SLC16A13Q7RTY0 426 aa13.5□□□□□ -0.25
SHMT2-226ENST00000556825 MICALL2Q8IY33 904 aa13.5□□□□□ -0.25
SHMT2-226ENST00000556825 CHPFQ8IZ52 775 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms