RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 PDYNP01213 254 aa25.61■■□□□ 1.69
CCDC88C-205ENST00000553403 TCN1P20061 433 aaPredicted RBP25.61■■□□□ 1.69
CCDC88C-205ENST00000553403 PRPH2P23942 346 aa25.61■■□□□ 1.69
CCDC88C-205ENST00000553403 HMGCS1Q01581 520 aa25.61■■□□□ 1.69
CCDC88C-205ENST00000553403 NFYCQ13952 458 aa25.61■■□□□ 1.69
CCDC88C-205ENST00000553403 CCDC85BQ15834 202 aaPredicted RBP25.61■■□□□ 1.69
CCDC88C-205ENST00000553403 CACHD1Q5VU97 1274 aa25.61■■□□□ 1.69
CCDC88C-205ENST00000553403 ZNF776Q68DI1 518 aaPredicted RBP25.61■■□□□ 1.69
CCDC88C-205ENST00000553403 TLDC1Q6P9B6 456 aa25.61■■□□□ 1.69
CCDC88C-205ENST00000553403 RNF111Q6ZNA4 994 aa25.61■■□□□ 1.69
CCDC88C-205ENST00000553403 ZNF547Q8IVP9 402 aa25.61■■□□□ 1.69
CCDC88C-205ENST00000553403 HDDC3Q8N4P3 179 aa25.61■■□□□ 1.69
CCDC88C-205ENST00000553403 OR2L2Q8NH16 312 aa25.61■■□□□ 1.69
CCDC88C-205ENST00000553403 OR56A3Q8NH54 315 aa25.61■■□□□ 1.69
CCDC88C-205ENST00000553403 VPS33AQ96AX1 596 aa25.61■■□□□ 1.69
CCDC88C-205ENST00000553403 SLC45A3Q96JT2 553 aa25.61■■□□□ 1.69
CCDC88C-205ENST00000553403 DPEP2Q9H4A9 486 aa25.61■■□□□ 1.69
CCDC88C-205ENST00000553403 CLDND1Q9NY35 253 aa25.61■■□□□ 1.69
CCDC88C-205ENST00000553403 CKAP5Q14008 2032 aa25.61■■□□□ 1.69
CCDC88C-205ENST00000553403 ANHXE9PGG2 379 aa25.61■■□□□ 1.69
CCDC88C-205ENST00000553403 DLL1O00548 723 aa25.61■■□□□ 1.69
CCDC88C-205ENST00000553403 CHIT1Q13231 466 aa25.61■■□□□ 1.69
CCDC88C-205ENST00000553403 HTR4Q13639 388 aa25.61■■□□□ 1.69
CCDC88C-205ENST00000553403 ADGRE1Q14246 886 aa25.61■■□□□ 1.69
CCDC88C-205ENST00000553403 C2orf27AQ580R0 203 aa25.61■■□□□ 1.69
CCDC88C-205ENST00000553403 XKR5Q6UX68 686 aa25.61■■□□□ 1.69
CCDC88C-205ENST00000553403 PRR23BQ6ZRT6 265 aa25.61■■□□□ 1.69
CCDC88C-205ENST00000553403 SLC15A3Q8IY34 581 aa25.61■■□□□ 1.69
CCDC88C-205ENST00000553403 DPP10Q8N608 796 aa25.61■■□□□ 1.69
CCDC88C-205ENST00000553403 PLA2G15Q8NCC3 412 aa25.61■■□□□ 1.69
CCDC88C-205ENST00000553403 FAM156AQ8NDB6 213 aa25.61■■□□□ 1.69
CCDC88C-205ENST00000553403 ZNF570Q96NI8 536 aa25.61■■□□□ 1.69
CCDC88C-205ENST00000553403 NECTIN4Q96NY8 510 aa25.61■■□□□ 1.69
CCDC88C-205ENST00000553403 ZBTB18Q99592 522 aa25.61■■□□□ 1.69
CCDC88C-205ENST00000553403 SLC39A3Q9BRY0 314 aa25.61■■□□□ 1.69
CCDC88C-205ENST00000553403 ACPTQ9BZG2 426 aa25.61■■□□□ 1.69
CCDC88C-205ENST00000553403 IL1RL2Q9HB29 575 aa25.61■■□□□ 1.69
CCDC88C-205ENST00000553403 C6orf203Q9P0P8 240 aaPredicted RBP25.61■■□□□ 1.69
CCDC88C-205ENST00000553403 KRT87PA6NCN2 255 aa25.6■■□□□ 1.69
CCDC88C-205ENST00000553403 MGAT4DA6NG13 374 aa25.6■■□□□ 1.69
CCDC88C-205ENST00000553403 PRAMEF4O60810 478 aa25.6■■□□□ 1.69
CCDC88C-205ENST00000553403 SEC22BO75396 215 aa25.6■■□□□ 1.69
CCDC88C-205ENST00000553403 HSD17B1P14061 328 aa25.6■■□□□ 1.69
CCDC88C-205ENST00000553403 ACADSP16219 412 aa25.6■■□□□ 1.69
CCDC88C-205ENST00000553403 TEAD1P28347 426 aa25.6■■□□□ 1.69
CCDC88C-205ENST00000553403 TIE1P35590 1138 aa25.6■■□□□ 1.69
CCDC88C-205ENST00000553403 HALP42357 657 aa25.6■■□□□ 1.69
CCDC88C-205ENST00000553403 RPS14P62263 151 aaKnown RBP25.6■■□□□ 1.69
CCDC88C-205ENST00000553403 NAE1Q13564 534 aa25.6■■□□□ 1.69
CCDC88C-205ENST00000553403 PAGE3Q5JUK9 113 aa25.6■■□□□ 1.69
CCDC88C-205ENST00000553403 PRAMEF9Q5VWM5 478 aa25.6■■□□□ 1.69
CCDC88C-205ENST00000553403 GLB1L3Q8NCI6 653 aaPredicted RBP25.6■■□□□ 1.69
CCDC88C-205ENST00000553403 OR2T3Q8NH03 318 aa25.6■■□□□ 1.69
CCDC88C-205ENST00000553403 NAF1Q96HR8 494 aaKnown RBP25.6■■□□□ 1.69
CCDC88C-205ENST00000553403 RSRC1Q96IZ7 334 aaKnown RBP25.6■■□□□ 1.69
CCDC88C-205ENST00000553403 MSLNLQ96KJ4 702 aa25.6■■□□□ 1.69
CCDC88C-205ENST00000553403 ZFC3H1O60293 1989 aaKnown RBP25.6■■□□□ 1.69
CCDC88C-205ENST00000553403 NME4O00746 187 aa25.59■■□□□ 1.69
CCDC88C-205ENST00000553403 PCDH8O95206 1070 aa25.59■■□□□ 1.69
CCDC88C-205ENST00000553403 ATP6V1C1P21283 382 aa25.59■■□□□ 1.69
CCDC88C-205ENST00000553403 SLC6A2P23975 617 aa25.59■■□□□ 1.69
CCDC88C-205ENST00000553403 VARSP26640 1264 aaKnown RBP25.59■■□□□ 1.69
CCDC88C-205ENST00000553403 IMPA1P29218 277 aa25.59■■□□□ 1.69
CCDC88C-205ENST00000553403 IRF8Q02556 426 aa25.59■■□□□ 1.69
CCDC88C-205ENST00000553403 WSCD2Q2TBF2 565 aa25.59■■□□□ 1.69
CCDC88C-205ENST00000553403 CCSMST1Q4G0I0 132 aa25.59■■□□□ 1.69
CCDC88C-205ENST00000553403 TIGD2Q4W5G0 525 aa25.59■■□□□ 1.69
CCDC88C-205ENST00000553403 EZH1Q92800 747 aaPredicted RBP25.59■■□□□ 1.69
CCDC88C-205ENST00000553403 FOXJ1Q92949 421 aa25.59■■□□□ 1.69
CCDC88C-205ENST00000553403 MTFMTQ96DP5 389 aaKnown RBP25.59■■□□□ 1.69
CCDC88C-205ENST00000553403 CMTM7Q96FZ5 175 aa25.59■■□□□ 1.69
CCDC88C-205ENST00000553403 VCX3BQ9H321 246 aa25.59■■□□□ 1.69
CCDC88C-205ENST00000553403 FBRSQ9HAH7 460 aa25.59■■□□□ 1.69
CCDC88C-205ENST00000553403 INTS7Q9NVH2 962 aaKnown RBP25.59■■□□□ 1.69
CCDC88C-205ENST00000553403 MCM8Q9UJA3 840 aa25.59■■□□□ 1.69
CCDC88C-205ENST00000553403 PCDHA9Q9Y5H5 950 aa25.59■■□□□ 1.69
CCDC88C-205ENST00000553403 CASQ2O14958 399 aaPredicted RBP25.58■■□□□ 1.69
CCDC88C-205ENST00000553403 PCCBP05166 539 aa25.58■■□□□ 1.69
CCDC88C-205ENST00000553403 C8BP07358 591 aa25.58■■□□□ 1.69
CCDC88C-205ENST00000553403 SEC13P55735 322 aa25.58■■□□□ 1.69
CCDC88C-205ENST00000553403 MRPS22P82650 360 aaKnown RBP25.58■■□□□ 1.69
CCDC88C-205ENST00000553403 KIAA0040Q15053 153 aa25.58■■□□□ 1.69
CCDC88C-205ENST00000553403 FRG2Q64ET8 278 aa25.58■■□□□ 1.69
CCDC88C-205ENST00000553403 EP400NLQ6ZTU2 488 aa25.58■■□□□ 1.69
CCDC88C-205ENST00000553403 HEATR4Q86WZ0 1026 aa25.58■■□□□ 1.69
CCDC88C-205ENST00000553403 FRG2BQ96QU4 278 aa25.58■■□□□ 1.69
CCDC88C-205ENST00000553403 GABRG3Q99928 467 aa25.58■■□□□ 1.69
CCDC88C-205ENST00000553403 CMTM6Q9NX76 183 aa25.58■■□□□ 1.69
CCDC88C-205ENST00000553403 GPRC5BQ9NZH0 403 aa25.58■■□□□ 1.69
CCDC88C-205ENST00000553403 DNMT3AQ9Y6K1 912 aaPredicted RBP25.58■■□□□ 1.69
CCDC88C-205ENST00000553403 TRANK1O15050 2925 aa25.58■■□□□ 1.69
CCDC88C-205ENST00000553403 C15orf38-AP3S2A0A0A6YYH1 394 aa25.58■■□□□ 1.68
CCDC88C-205ENST00000553403 CLGNO14967 610 aa25.58■■□□□ 1.68
CCDC88C-205ENST00000553403 STAMBPO95630 424 aa25.58■■□□□ 1.68
CCDC88C-205ENST00000553403 SLC16A8O95907 504 aa25.58■■□□□ 1.68
CCDC88C-205ENST00000553403 ACPPP15309 386 aa25.58■■□□□ 1.68
CCDC88C-205ENST00000553403 NTSR1P30989 418 aa25.58■■□□□ 1.68
CCDC88C-205ENST00000553403 LTBRP36941 435 aa25.58■■□□□ 1.68
CCDC88C-205ENST00000553403 CDK3Q00526 305 aa25.58■■□□□ 1.68
CCDC88C-205ENST00000553403 RPA4Q13156 261 aa25.58■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms