RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 SIPA1Q96FS4 1042 aa4.64□□□□□ -1.67
LIMA1-205ENST00000550592 OXNAD1Q96HP4 312 aaPredicted RBP4.64□□□□□ -1.67
LIMA1-205ENST00000550592 THOC3Q96J01 351 aaKnown RBP4.64□□□□□ -1.67
LIMA1-205ENST00000550592 SPATA17Q96L03 361 aa4.64□□□□□ -1.67
LIMA1-205ENST00000550592 SEPHS2Q99611 448 aa4.64□□□□□ -1.67
LIMA1-205ENST00000550592 WACQ9BTA9 647 aa4.64□□□□□ -1.67
LIMA1-205ENST00000550592 LMF2Q9BU23 707 aaKnown RBP4.64□□□□□ -1.67
LIMA1-205ENST00000550592 FNDC11Q9BVV2 318 aa4.64□□□□□ -1.67
LIMA1-205ENST00000550592 TBC1D17Q9HA65 648 aa4.64□□□□□ -1.67
LIMA1-205ENST00000550592 LRRC4Q9HBW1 653 aa4.64□□□□□ -1.67
LIMA1-205ENST00000550592 PFDN4Q9NQP4 134 aa4.64□□□□□ -1.67
LIMA1-205ENST00000550592 OSER1Q9NX31 292 aa4.64□□□□□ -1.67
LIMA1-205ENST00000550592 DPP3Q9NY33 737 aa4.64□□□□□ -1.67
LIMA1-205ENST00000550592 STK26Q9P289 416 aa4.64□□□□□ -1.67
LIMA1-205ENST00000550592 ZNF112Q9UJU3 913 aa4.64□□□□□ -1.67
LIMA1-205ENST00000550592 ANAPC5Q9UJX4 755 aa4.64□□□□□ -1.67
LIMA1-205ENST00000550592 MYOM3Q5VTT5 1437 aa4.63□□□□□ -1.67
LIMA1-205ENST00000550592 PARP4Q9UKK3 1724 aaKnown RBP4.63□□□□□ -1.67
LIMA1-205ENST00000550592 NRXN1Q9ULB1 1477 aa4.63□□□□□ -1.67
LIMA1-205ENST00000550592 KCPQ6ZWJ8 1503 aa4.63□□□□□ -1.67
LIMA1-205ENST00000550592 MED19A0JLT2 244 aaPredicted RBP4.63□□□□□ -1.67
LIMA1-205ENST00000550592 CCDC188H7C350 402 aa4.63□□□□□ -1.67
LIMA1-205ENST00000550592 PDE9AO76083 593 aa4.63□□□□□ -1.67
LIMA1-205ENST00000550592 LIPFP07098 398 aa4.63□□□□□ -1.67
LIMA1-205ENST00000550592 OR52Z1P0C646 297 aa4.63□□□□□ -1.67
LIMA1-205ENST00000550592 MCCP23508 829 aa4.63□□□□□ -1.67
LIMA1-205ENST00000550592 HOXC8P31273 242 aa4.63□□□□□ -1.67
LIMA1-205ENST00000550592 PRKAA1Q13131 559 aa4.63□□□□□ -1.67
LIMA1-205ENST00000550592 ZNF273Q14593 569 aa4.63□□□□□ -1.67
LIMA1-205ENST00000550592 DUOXA1Q1HG43 343 aa4.63□□□□□ -1.67
LIMA1-205ENST00000550592 NDUFAF5Q5TEU4 345 aa4.63□□□□□ -1.67
LIMA1-205ENST00000550592 IRAK1BP1Q5VVH5 260 aa4.63□□□□□ -1.67
LIMA1-205ENST00000550592 SUSD1Q6UWL2 747 aa4.63□□□□□ -1.67
LIMA1-205ENST00000550592 PRSS57Q6UWY2 283 aa4.63□□□□□ -1.67
LIMA1-205ENST00000550592 GALNTL5Q7Z4T8 443 aa4.63□□□□□ -1.67
LIMA1-205ENST00000550592 THNSL1Q8IYQ7 743 aa4.63□□□□□ -1.67
LIMA1-205ENST00000550592 DCP1BQ8IZD4 617 aaKnown RBP4.63□□□□□ -1.67
LIMA1-205ENST00000550592 LINGO1Q96FE5 620 aa4.63□□□□□ -1.67
LIMA1-205ENST00000550592 IL17FQ96PD4 163 aa4.63□□□□□ -1.67
LIMA1-205ENST00000550592 ADPGKQ9BRR6 497 aa4.63□□□□□ -1.67
LIMA1-205ENST00000550592 C1QTNF4Q9BXJ3 329 aa4.63□□□□□ -1.67
LIMA1-205ENST00000550592 FAM129AQ9BZQ8 928 aa4.63□□□□□ -1.67
LIMA1-205ENST00000550592 C6orf106Q9H6K1 298 aaPredicted RBP4.63□□□□□ -1.67
LIMA1-205ENST00000550592 TRPC7Q9HCX4 862 aa4.63□□□□□ -1.67
LIMA1-205ENST00000550592 LIPGQ9Y5X9 500 aa4.63□□□□□ -1.67
LIMA1-205ENST00000550592 A0A1W2PS18 150 aa4.62□□□□□ -1.67
LIMA1-205ENST00000550592 SYNGR3O43761 229 aa4.62□□□□□ -1.67
LIMA1-205ENST00000550592 H1F0P07305 194 aaKnown RBP4.62□□□□□ -1.67
LIMA1-205ENST00000550592 KRT19P08727 400 aa4.62□□□□□ -1.67
LIMA1-205ENST00000550592 RAB40ALP0C0E4 278 aa4.62□□□□□ -1.67
LIMA1-205ENST00000550592 FDPSP14324 419 aaKnown RBP4.62□□□□□ -1.67
LIMA1-205ENST00000550592 HMGB2P26583 209 aaKnown RBP4.62□□□□□ -1.67
LIMA1-205ENST00000550592 GP5P40197 560 aa4.62□□□□□ -1.67
LIMA1-205ENST00000550592 PSMC4P43686 418 aa4.62□□□□□ -1.67
LIMA1-205ENST00000550592 TERF1P54274 439 aa4.62□□□□□ -1.67
LIMA1-205ENST00000550592 PRKCZQ05513 592 aa4.62□□□□□ -1.67
LIMA1-205ENST00000550592 ACSM1Q08AH1 577 aa4.62□□□□□ -1.67
LIMA1-205ENST00000550592 GAGE5Q13069 117 aa4.62□□□□□ -1.67
LIMA1-205ENST00000550592 GAGE6Q13070 117 aa4.62□□□□□ -1.67
LIMA1-205ENST00000550592 SCARB2Q14108 478 aa4.62□□□□□ -1.67
LIMA1-205ENST00000550592 MDH1BQ5I0G3 518 aa4.62□□□□□ -1.67
LIMA1-205ENST00000550592 STXBP5Q5T5C0 1151 aa4.62□□□□□ -1.67
LIMA1-205ENST00000550592 PRR27Q6MZM9 219 aa4.62□□□□□ -1.67
LIMA1-205ENST00000550592 DCLRE1AQ6PJP8 1040 aa4.62□□□□□ -1.67
LIMA1-205ENST00000550592 LIN28BQ6ZN17 250 aaKnown RBP eCLIP4.62□□□□□ -1.67
LIMA1-205ENST00000550592 FAM47EQ6ZV65 393 aa4.62□□□□□ -1.67
LIMA1-205ENST00000550592 TMPRSS11FQ6ZWK6 438 aa4.62□□□□□ -1.67
LIMA1-205ENST00000550592 DET1Q7L5Y6 550 aa4.62□□□□□ -1.67
LIMA1-205ENST00000550592 PIWIL4Q7Z3Z4 852 aaKnown RBP4.62□□□□□ -1.67
LIMA1-205ENST00000550592 GLRX5Q86SX6 157 aa4.62□□□□□ -1.67
LIMA1-205ENST00000550592 MFN1Q8IWA4 741 aa4.62□□□□□ -1.67
LIMA1-205ENST00000550592 GPALPP1Q8IXQ4 340 aa4.62□□□□□ -1.67
LIMA1-205ENST00000550592 CPSF7Q8N684 471 aaKnown RBP4.62□□□□□ -1.67
LIMA1-205ENST00000550592 PPFIBP2Q8ND30 876 aa4.62□□□□□ -1.67
LIMA1-205ENST00000550592 OR5M8Q8NGP6 311 aa4.62□□□□□ -1.67
LIMA1-205ENST00000550592 LMO3Q8TAP4 145 aa4.62□□□□□ -1.67
LIMA1-205ENST00000550592 ROBO4Q8WZ75 1007 aa4.62□□□□□ -1.67
LIMA1-205ENST00000550592 IGSF21Q96ID5 467 aa4.62□□□□□ -1.67
LIMA1-205ENST00000550592 EGFL8Q99944 293 aa4.62□□□□□ -1.67
LIMA1-205ENST00000550592 LRRC1Q9BTT6 524 aa4.62□□□□□ -1.67
LIMA1-205ENST00000550592 POLR3CQ9BUI4 534 aaPredicted RBP4.62□□□□□ -1.67
LIMA1-205ENST00000550592 ACKR4Q9NPB9 350 aa4.62□□□□□ -1.67
LIMA1-205ENST00000550592 SPIN1Q9Y657 262 aaPredicted RBP4.62□□□□□ -1.67
LIMA1-205ENST00000550592 ANKRD30AQ9BXX3 1397 aa4.62□□□□□ -1.67
LIMA1-205ENST00000550592 PAPPAQ13219 1627 aa4.61□□□□□ -1.67
LIMA1-205ENST00000550592 IQGAP3Q86VI3 1631 aa4.61□□□□□ -1.67
LIMA1-205ENST00000550592 PHRF1Q9P1Y6 1649 aaKnown RBP4.61□□□□□ -1.67
LIMA1-205ENST00000550592 QSER1Q2KHR3 1735 aa4.61□□□□□ -1.67
LIMA1-205ENST00000550592 BAG4O95429 457 aaKnown RBP4.61□□□□□ -1.67
LIMA1-205ENST00000550592 CBLP22681 906 aa4.61□□□□□ -1.67
LIMA1-205ENST00000550592 ASCL1P50553 236 aa4.61□□□□□ -1.67
LIMA1-205ENST00000550592 ZNF132P52740 706 aa4.61□□□□□ -1.67
LIMA1-205ENST00000550592 PPARDQ03181 441 aa4.61□□□□□ -1.67
LIMA1-205ENST00000550592 ILF3Q12906 894 aaKnown RBP eCLIP4.61□□□□□ -1.67
LIMA1-205ENST00000550592 FHL1Q13642 323 aa4.61□□□□□ -1.67
LIMA1-205ENST00000550592 KRT39Q6A163 491 aa4.61□□□□□ -1.67
LIMA1-205ENST00000550592 TRAT1Q6PIZ9 186 aa4.61□□□□□ -1.67
LIMA1-205ENST00000550592 ZNF517Q6ZMY9 492 aaPredicted RBP4.61□□□□□ -1.67
LIMA1-205ENST00000550592 ZBTB49Q6ZSB9 765 aa4.61□□□□□ -1.67
LIMA1-205ENST00000550592 TOM1L2Q6ZVM7 507 aa4.61□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms